FC930281

Overview
NameFC930281
Unique NameFC930281
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930281 vs. ExPASy Swiss-Prot
Match: MPPA_SOLTU (Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.194e-55
Identity = 114/198 (57.58%), Postives = 132/198 (66.67%), Query Frame = 1
Query:   91 MYRNAASRLRALKGHVRCRVPXXXXXXXXXXXXXXXXXXXXXXXWLTGERXXXXXXLDFXXXXXXXXXXXXDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTR 684
            MYR A+SRL +LK     RV                        W+TG+       LDF            DYVEP KT+I+TL NG+K+ASE SV+P ASI LYV CGSIYE+P S+G THLLERMAF+ST NRSHLRIVRE+EAIGGNV ASASRE M Y++DALKTYVP+MVE+L DCVRNP FLDWEV EQL +
Sbjct:    1 MYRCASSRLSSLKARQGNRV----LTRFSSSAAVATKPSGGLFSWITGDTSSSVTPLDFPLNDVKLSPPLPDYVEPAKTQITTLANGLKVASEASVNPAASIGLYVDCGSIYETPASYGATHLLERMAFKSTLNRSHLRIVREIEAIGGNVTASASREHMIYTYDALKTYVPQMVEMLADCVRNPAFLDWEVKEQLEK 194          
BLAST of FC930281 vs. ExPASy Swiss-Prot
Match: MPPA1_ARATH (Probable mitochondrial-processing peptidase subunit alpha-1 OS=Arabidopsis thaliana GN=At1g51980 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.484e-52
Identity = 112/198 (56.57%), Postives = 127/198 (64.14%), Query Frame = 1
Query:   91 MYRNAASRLRALKGHVRCRVPXXXXXXXXXXXXXXXXXXXXXXXWLTGERXXXXXXLDFXXXXXXXXXXXXDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTR 684
            MYR AASR RALKG V  R                         WL+G        LD             D VEP K +I+TLPNG+KIASET+ +P ASI LYV CGSIYE+P   G THLLERMAF+ST NR+H R+VRE+EAIGGN  ASASREQM Y+ DALKTYVPEMVE+LID VRNP FLDWEVNE+L +
Sbjct:    1 MYRTAASRARALKG-VLTRSLRPARYASSSAVAETSSSTPAYLSWLSGGSRAALTSLDMPLQGVSLPPPLADKVEPSKLQITTLPNGLKIASETTPNPAASIGLYVDCGSIYEAPYFHGATHLLERMAFKSTLNRTHFRLVREIEAIGGNTSASASREQMSYTIDALKTYVPEMVEVLIDSVRNPAFLDWEVNEELRK 197          
BLAST of FC930281 vs. ExPASy Swiss-Prot
Match: MPPA2_ARATH (Probable mitochondrial-processing peptidase subunit alpha-2 OS=Arabidopsis thaliana GN=At3g16480 PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.093e-50
Identity = 107/198 (54.04%), Postives = 125/198 (63.13%), Query Frame = 1
Query:   91 MYRNAASRLRALKGHVRCRVPXXXXXXXXXXXXXXXXXXXXXXXWLTGERXXXXXXLDFXXXXXXXXXXXXDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTR 684
            MYR AASR +ALKG     +                        WL+G        ++             D+VEP K K +TLPNG+ IA+E S +P ASI LYV CGSIYE+P   G THLLERMAF+ST NRSH R+VRE+EAIGGN  ASASREQMGY+ DALKTYVPEMVE+LID VRNP FLDWEVNE+L +
Sbjct:    1 MYRTAASRAKALKG-----ILNHNFRASRYASSSAVATSSSSSSWLSGGYSSSLPSMNIPLAGVSLPPPLSDHVEPSKLKTTTLPNGLTIATEMSPNPAASIGLYVDCGSIYETPQFRGATHLLERMAFKSTLNRSHFRLVREIEAIGGNTSASASREQMGYTIDALKTYVPEMVEVLIDSVRNPAFLDWEVNEELRK 193          
BLAST of FC930281 vs. ExPASy Swiss-Prot
Match: MPPA1_DICDI (Mitochondrial-processing peptidase subunit alpha-1 OS=Dictyostelium discoideum GN=mppA1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 45/119 (37.82%), Postives = 76/119 (63.87%), Query Frame = 1
Query:  322 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQL 678
            K +ISTLPNG+++ S+ +   V +I LY+  G+ YESP   G  +LLE+M F+ T+N S   I++E+E I  N  AS+SRE +  S + L+  +  ++ +L D +++P + + E+ EQ+
Sbjct:  143 KAEISTLPNGIRVVSKQTHEGVCAIGLYINAGTKYESPQDRGVFNLLEKMTFKETKNNSTSEIIKELEEISMNAMASSSREMINVSLEVLRKDLEFVLSILSDQIKSPTYSEEELREQI 261          
BLAST of FC930281 vs. ExPASy Swiss-Prot
Match: MPPA_NEUCR (Mitochondrial-processing peptidase subunit alpha OS=Neurospora crassa GN=mpp PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.549e-17
Identity = 42/119 (35.29%), Postives = 71/119 (59.66%), Query Frame = 1
Query:  322 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQL 678
            +  I+TL NGV++ASE      + + +Y+  GS YE+    G +H+++R+AF+ST  R+   ++  VE +GGN+Q ++SRE M Y        +P  VEL+ + +R+P   D E+  Q+
Sbjct:   51 RDNITTLSNGVRVASEDLPDAFSGVGVYIDAGSRYENDYVRGASHIMDRLAFKSTSTRTADEMLETVEKLGGNIQCASSRESMMYQAATFNKAIPTAVELMAETIRDPKLTDEELEGQI 169          
BLAST of FC930281 vs. ExPASy Swiss-Prot
Match: QCR2_HUMAN (Cytochrome b-c1 complex subunit 2, mitochondrial OS=Homo sapiens GN=UQCRC2 PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 2.643e-17
Identity = 45/118 (38.14%), Postives = 70/118 (59.32%), Query Frame = 1
Query:  313 EPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEV 666
            +P   + + LPNG+ IAS  + SPV+ I L++  GS YE   + GTTHLL   +  +T+  S  +I R +EA+GG +  +A+RE M Y+ + L+  V  ++E L++    P F  WEV
Sbjct:   34 QPQDLEFTKLPNGLVIASLENYSPVSRIGLFIKAGSRYEDFSNLGTTHLLRLTSSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVECLRGDVDILMEFLLNVTTAPEFRRWEV 151          
BLAST of FC930281 vs. ExPASy Swiss-Prot
Match: QCR2_MOUSE (Cytochrome b-c1 complex subunit 2, mitochondrial OS=Mus musculus GN=Uqcrc2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 41/119 (34.45%), Postives = 72/119 (60.50%), Query Frame = 1
Query:  310 VEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEV 666
            ++P   + + LPNG+ IAS  + +P++ I L+V  GS YE   + GT+HLL   +  +T+  S  +I R +EA+GG +  +A+RE M Y+ + +++ +  ++E L++    P F  WEV
Sbjct:   33 LQPQDLEFTKLPNGLVIASLENYAPLSRIGLFVKAGSRYEDSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVEGIRSDIEILMEFLLNVTTAPEFRRWEV 151          
BLAST of FC930281 vs. ExPASy Swiss-Prot
Match: QCR1_RAT (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Rattus norvegicus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.713e-16
Identity = 42/118 (35.59%), Postives = 74/118 (62.71%), Query Frame = 1
Query:  322 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQ 675
            +T++S L NG+++ASE S  P  ++ +++  GS YE+  + G  + LE +AF+ T+NR    + +EVE+IG ++ A ++RE   Y   AL   +P++VELL D V+N    D ++ ++
Sbjct:   47 ETQVSVLDNGLRVASEQSSHPTCTVGVWIDVGSRYETEKNNGAGYFLEHLAFKGTKNRPGNALEKEVESIGAHLNAYSTREHTAYLIKALSKDLPKVVELLADIVQNISLEDSQIEKE 164          
BLAST of FC930281 vs. ExPASy Swiss-Prot
Match: QCR2_RAT (Cytochrome b-c1 complex subunit 2, mitochondrial OS=Rattus norvegicus GN=Uqcrc2 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.985e-16
Identity = 40/119 (33.61%), Postives = 72/119 (60.50%), Query Frame = 1
Query:  310 VEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEV 666
            ++P + + + LPNG+ IAS  + +P++ I L++  GS YE+    GT+HLL   +  +T+  S  +I R +EA+GG +  +A+RE M Y+ + ++  +  ++E L++    P F  WEV
Sbjct:   32 LQPQELEFTKLPNGLVIASLENYAPLSRIGLFIKAGSRYENYNYLGTSHLLRLASTLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVEGIRDDIEILMEFLLNVTTAPEFRRWEV 150          
BLAST of FC930281 vs. ExPASy Swiss-Prot
Match: QCR1_BOVIN (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Bos taurus GN=UQCRC1 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.985e-16
Identity = 41/118 (34.75%), Postives = 73/118 (61.86%), Query Frame = 1
Query:  322 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQ 675
            +T++S L NG+++ASE S  P  ++ +++  GS YES  + G  + +E +AF+ T+NR    + +EVE++G ++ A ++RE   Y   AL   +P+ VELL D V+N    D ++ ++
Sbjct:   47 ETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKE 164          
The following BLAST results are available for this feature:
BLAST of FC930281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
MPPA_SOLTU3.194e-5557.58Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA1_ARATH1.484e-5256.57Probable mitochondrial-processing peptidase subuni... [more]
MPPA2_ARATH3.093e-5054.04Probable mitochondrial-processing peptidase subuni... [more]
MPPA1_DICDI4.817e-1937.82Mitochondrial-processing peptidase subunit alpha-1... [more]
MPPA_NEUCR1.549e-1735.29Mitochondrial-processing peptidase subunit alpha O... [more]
QCR2_HUMAN2.643e-1738.14Cytochrome b-c1 complex subunit 2, mitochondrial O... [more]
QCR2_MOUSE1.312e-1634.45Cytochrome b-c1 complex subunit 2, mitochondrial O... [more]
QCR1_RAT1.713e-1635.59Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
QCR2_RAT4.985e-1633.61Cytochrome b-c1 complex subunit 2, mitochondrial O... [more]
QCR1_BOVIN4.985e-1634.75Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionC34005G05EF PostHarvC1 Citrus clementina cDNA clone C34005G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930281 ID=FC930281; Name=FC930281; organism=Citrus clementina; type=EST; length=692bp
GGAGCCTCTTTCTCTCGATTAGCTGCCAGTCTTCAACACTTGTCCCGTTC
AAATTAGGGTTTTGGAGAATTGACTATCAAATCAATCAGCATGTACAGAA
ACGCAGCCTCTCGTCTTCGAGCCCTCAAGGGCCATGTGCGTTGTAGGGTG
CCTTCAGCCACAAGATTTGCAAGTTCCAGTGCCGTTGCTTCAACTTCATC
CTCTTCGGGTGGTCTCTTTAGCTGGTTGACTGGGGAACGGTCCAGTTCTT
CACCTTCTCTGGACTTTCCACTTCCGGGTGTCTCTCTTCCACCTTCATTG
CCTGATTATGTTGAACCTGGTAAAACCAAGATTTCTACTCTACCAAATGG
TGTCAAAATTGCCTCGGAAACATCAGTGAGTCCTGTAGCCTCAATATCGT
TATATGTTGGTTGTGGTTCAATTTATGAGTCACCAATCTCATTTGGGACA
ACACACTTGCTTGAGCGTATGGCTTTTAGAAGTACAAGAAATAGGAGTCA
CTTGCGTATTGTGCGAGAAGTGGAGGCAATTGGTGGCAATGTCCAAGCCT
CAGCTTCTAGGGAGCAGATGGGTTACTCCTTTGATGCTTTGAAAACTTAT
GTTCCTGAAATGGTAGAGCTTCTTATTGACTGTGTGAGAAACCCTGTTTT
TCTGGATTGGGAGGTCAACGAACAGCTCACAAGGTGAAATCT
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