FC930292

Overview
NameFC930292
Unique NameFC930292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930292 vs. ExPASy Swiss-Prot
Match: SAR1A_ARATH (GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 7.367e-79
Identity = 146/185 (78.92%), Postives = 153/185 (82.70%), Query Frame = 1
Query:  148 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGF 702
            MF++DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVW                   ERFAESKK            +VPFL+LGNKIDIPYAASE+ELRYHLGLSNFTTGKGKVNL DSNVRPLEVFMCSIVRKMGYG+GF
Sbjct:    1 MFMIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLASVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGF 185          
BLAST of FC930292 vs. ExPASy Swiss-Prot
Match: SAR1A_BRACM (GTP-binding protein SAR1A OS=Brassica campestris GN=SAR1A PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.095e-77
Identity = 144/185 (77.84%), Postives = 151/185 (81.62%), Query Frame = 1
Query:  148 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGF 702
            MF++DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVW                   ERFAESKK             VPFL+LGNKIDIPYAASE+ELRYHLGLSNFTTGKGKV+L  SNVRPLEVFMCSIVRKMGYG+GF
Sbjct:    1 MFVIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVDLVGSNVRPLEVFMCSIVRKMGYGEGF 185          
BLAST of FC930292 vs. ExPASy Swiss-Prot
Match: SAR1B_ARATH (GTP-binding protein SAR1B OS=Arabidopsis thaliana GN=SAR1B PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.536e-76
Identity = 142/185 (76.76%), Postives = 149/185 (80.54%), Query Frame = 1
Query:  148 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGF 702
            MFL DWFYG+LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVW                   ERFAESK+             VPFL+LGNKIDIPYAASE+ELRYHLGL+NFTTGKGKV L DS VRPLEVFMCSIVRKMGYG+GF
Sbjct:    1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKRELDALLSDEALATVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVTLGDSGVRPLEVFMCSIVRKMGYGEGF 185          
BLAST of FC930292 vs. ExPASy Swiss-Prot
Match: SAR2_SOLLC (GTP-binding protein SAR2 OS=Solanum lycopersicum GN=SAR2 PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 8.429e-75
Identity = 138/185 (74.59%), Postives = 148/185 (80.00%), Query Frame = 1
Query:  148 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGF 702
            MFL+DWFYGVLASLGLWQK+AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIG IKFKAFDLGGHQIARRVW                   ERF E+KK            NVPFL+LGNKIDIPYAASE+ELRYHLGL+  TTGKG +NLA +NVRP+EVFMCSIVRKMGYG+GF
Sbjct:    1 MFLVDWFYGVLASLGLWQKDAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGNIKFKAFDLGGHQIARRVWRDYYAKVDAVVYLVDANDRERFPEAKKELDGLLSDESLTNVPFLILGNKIDIPYAASEDELRYHLGLTGVTTGKGNINLAGTNVRPIEVFMCSIVRKMGYGEGF 185          
BLAST of FC930292 vs. ExPASy Swiss-Prot
Match: SAR1B_BRACM (GTP-binding protein SAR1B OS=Brassica campestris GN=SAR1B PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 4.183e-74
Identity = 141/187 (75.40%), Postives = 148/187 (79.14%), Query Frame = 1
Query:  148 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLA--DSNVRPLEVFMCSIVRKMGYGDGF 702
            MFL DWFYG+LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVW                   ERF+ESKK             VPFL+LGNKID PYAASE+ELRYHLGL+NFTTGKGKV  A  DS VRPLEVFMCSIVRKMGYG+GF
Sbjct:    1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFSESKKELDALLSDDALATVPFLILGNKIDNPYAASEDELRYHLGLTNFTTGKGKVTTAGGDSGVRPLEVFMCSIVRKMGYGEGF 187          
BLAST of FC930292 vs. ExPASy Swiss-Prot
Match: SAR1_TOBAC (GTP-binding protein SAR1 OS=Nicotiana tabacum GN=SAR1 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.306e-59
Identity = 123/190 (64.74%), Postives = 136/190 (71.58%), Query Frame = 1
Query:  148 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGN---KIDIPYAASEE-ELRYHLGLSNFT-TGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGF 702
            MFL+DWFYG+LA+LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW                   ERFAESKK               FL L N   +I+ P     +   RYH+G +  +   +GKVNLADSNVRP+EVFMCSIVR+MGYG+GF
Sbjct:    1 MFLVDWFYGILATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDSFDKERFAESKKELDALLSGWSSLAHCFLFLDNWVTRIEHPICCLRKMNWRYHMGANGASPLARGKVNLADSNVRPVEVFMCSIVRQMGYGEGF 190          
BLAST of FC930292 vs. ExPASy Swiss-Prot
Match: SAR1_USTMA (Small COPII coat GTPase SAR1 OS=Ustilago maydis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.488e-51
Identity = 103/185 (55.68%), Postives = 127/185 (68.65%), Query Frame = 1
Query:  148 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGF 702
            MF+++WF+ +LA LGL  K AKILFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG++KF  +DLGGHQ ARR+W                   ERFAE++             +VPFL+LGNKID P A SEEELR  +GL   TTGKGKV L D  +RP+E+FMCS+V + GYG+GF
Sbjct:    1 MFIINWFWDILAQLGLAHKNAKILFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGQVKFTTYDLGGHQQARRLWKDYFPEVDGIVFLVDTQDHERFAEARAELDALLSIEELSSVPFLILGNKIDAPGAVSEEELRQAIGLYQ-TTGKGKVPLKD--IRPIEIFMCSVVMRQGYGEGF 182          
BLAST of FC930292 vs. ExPASy Swiss-Prot
Match: SAR1_YARLI (Small COPII coat GTPase SAR1 OS=Yarrowia lipolytica GN=SAR1 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.448e-50
Identity = 105/184 (57.07%), Postives = 123/184 (66.85%), Query Frame = 1
Query:  148 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDG 699
            M++++WFY VL+SLGLW K AK+LFLGLDNAGKTTLLHMLK++R+    PT +PTSEELSIG  KF  FDLGGH  ARRVW                    RFAESK              VPFL+LGNKID+P A SE EL+  LGL   TTGKGKV L + N+RP+E+FMCSIV + GYGDG
Sbjct:    1 MWIVNWFYDVLSSLGLWNKNAKLLFLGLDNAGKTTLLHMLKNDRMAVSNPTVHPTSEELSIGNCKFTTFDLGGHIQARRVWKDYFPEVNGIVFLVDAADPTRFAESKAELDSLLAIEQLKTVPFLILGNKIDMPQAVSELELKDALGLYQ-TTGKGKVPL-EGNIRPIEIFMCSIVMRQGYGDG 182          
BLAST of FC930292 vs. ExPASy Swiss-Prot
Match: SAR1_CRYNE (Small COPII coat GTPase SAR1 OS=Cryptococcus neoformans GN=SAR1 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.225e-50
Identity = 104/185 (56.22%), Postives = 125/185 (67.57%), Query Frame = 1
Query:  148 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGF 702
            MF+++WF+ VLASLGL  K AK+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG +KF  +DLGGH  ARR+W                   ERFAESK              VPFL+LGNKID   A SEE+LR+ LGL   TTGKGK+ L D  +RP+EVFMCS+V + GYG+GF
Sbjct:    1 MFIINWFWDVLASLGLMNKSAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGNVKFTTYDLGGHIQARRLWRDYFPEVDGIVFLVDSADAERFAESKAELDSLLSIESLAQVPFLILGNKIDAYGAVSEEQLRHELGLYQ-TTGKGKIPLRD--IRPIEVFMCSVVMRQGYGEGF 182          
BLAST of FC930292 vs. ExPASy Swiss-Prot
Match: SAR1_NEOFI (Small COPII coat GTPase sar1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sar1 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.731e-49
Identity = 103/184 (55.98%), Postives = 123/184 (66.85%), Query Frame = 1
Query:  148 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDG 699
            M++++WFY VLASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK              VPFL+LGNKID P A SE+ELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G
Sbjct:    1 MWIINWFYDVLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEG 181          
The following BLAST results are available for this feature:
BLAST of FC930292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
SAR1A_ARATH7.367e-7978.92GTP-binding protein SAR1A OS=Arabidopsis thaliana ... [more]
SAR1A_BRACM3.095e-7777.84GTP-binding protein SAR1A OS=Brassica campestris G... [more]
SAR1B_ARATH1.536e-7676.76GTP-binding protein SAR1B OS=Arabidopsis thaliana ... [more]
SAR2_SOLLC8.429e-7574.59GTP-binding protein SAR2 OS=Solanum lycopersicum G... [more]
SAR1B_BRACM4.183e-7475.40GTP-binding protein SAR1B OS=Brassica campestris G... [more]
SAR1_TOBAC1.306e-5964.74GTP-binding protein SAR1 OS=Nicotiana tabacum GN=S... [more]
SAR1_USTMA8.488e-5155.68Small COPII coat GTPase SAR1 OS=Ustilago maydis GN... [more]
SAR1_YARLI1.448e-5057.07Small COPII coat GTPase SAR1 OS=Yarrowia lipolytic... [more]
SAR1_CRYNE3.225e-5056.22Small COPII coat GTPase SAR1 OS=Cryptococcus neofo... [more]
SAR1_NEOFI2.731e-4955.98Small COPII coat GTPase sar1 OS=Neosartorya fische... [more]

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Properties
Property NameValue
Genbank descriptionC34005H06EF PostHarvC1 Citrus clementina cDNA clone C34005H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930292 ID=FC930292; Name=FC930292; organism=Citrus clementina; type=EST; length=706bp
GTCGCCCACTGAACTTGCTCATCTTAGGGTCAGTATCAAATCGAAACAGA
GGCCTTGAATTGGACGATCTGATTCGTTCTCAGCCTTAGATCGTCGTAAA
TTCAAGCTCGATCCGTTTTCGTTTCTAATTTGTCTACCGATAAAGCCATG
TTTCTCCTCGACTGGTTCTACGGCGTGCTGGCCTCCCTCGGTCTTTGGCA
GAAAGAGGCCAAGATCTTGTTTTTAGGGCTTGATAATGCTGGAAAAACAA
CGTTGCTTCACATGTTGAAAGATGAGAGATTGGTTCAACATCAGCCAACA
CAGTATCCCACATCGGAAGAGCTTAGTATTGGGAAAATTAAGTTCAAGGC
GTTTGATTTGGGAGGCCATCAGATTGCTAGGAGAGTCTGGAAGGATTACT
ATGCGAAGGTTGATGCTGTGGTATACCTAGTGGATGCCTATGACAAAGAG
AGGTTTGCAGAATCAAAGAAAGAACTGGATGCACTCCTTTCTGATGAGGC
ATTGGCCAATGTTCCTTTTCTTGTGTTAGGAAACAAGATTGACATCCCTT
ATGCTGCTTCTGAGGAAGAGTTGCGTTACCACCTTGGCCTATCAAATTTC
ACCACTGGGAAGGGGAAGGTTAATCTAGCGGACTCAAATGTCCGTCCACT
GGAGGTGTTTATGTGTAGCATAGTTCGCAAAATGGGATATGGTGATGGTT
TCAATG
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