FC930303

Overview
NameFC930303
Unique NameFC930303
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11439 contig Ccv1_Contig11439:59..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930303 vs. ExPASy Swiss-Prot
Match: ATX3H_ARATH (Ataxin-3 homolog OS=Arabidopsis thaliana GN=At3g54130 PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 6.912e-69
Identity = 127/146 (86.99%), Postives = 131/146 (89.73%), Query Frame = 3
Query:  273 MEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGR-VPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAA 707
            ME  SNGGMLYHEVQES LCAVHCVNTVLQGPFFSEFDLAA+A+DLD  ERQVMLEG  V   + GDFL EESHNVSL GDFSIQVLQKALEVWDLQVIPLNCP AEPAQIDPELE+AFICHLHDHWFCIRKVNGEWYNFDSL AA
Sbjct:    1 MERTSNGGMLYHEVQESNLCAVHCVNTVLQGPFFSEFDLAAVAADLDGKERQVMLEGAAVGGFAPGDFLAEESHNVSLGGDFSIQVLQKALEVWDLQVIPLNCPDAEPAQIDPELESAFICHLHDHWFCIRKVNGEWYNFDSLLAA 146          
BLAST of FC930303 vs. ExPASy Swiss-Prot
Match: ATX3_ORYSJ (Putative ataxin-3 homolog OS=Oryza sativa subsp. japonica GN=Os01g0851400 PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.887e-58
Identity = 113/146 (77.40%), Postives = 120/146 (82.19%), Query Frame = 3
Query:  282 ASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASS--GDFLTEE--SHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAA 707
            ASNGG+LYHEVQE KLCAVHCVNT LQGPFFSEFDL+ALA DLD+ ERQVM EG   AA++  GDFL E   SHNVSL GDFSIQVLQKALEVWDLQVIPL+ P       DPELE AFICHL DHWFCIRKVNGEWYNF+SLY A
Sbjct:    7 ASNGGLLYHEVQEGKLCAVHCVNTTLQGPFFSEFDLSALAVDLDQRERQVMSEGAAGAATTAAGDFLAEGEGSHNVSLGGDFSIQVLQKALEVWDLQVIPLDSPDVGSCLFDPELETAFICHLQDHWFCIRKVNGEWYNFNSLYPA 152          
BLAST of FC930303 vs. ExPASy Swiss-Prot
Match: ATX3_HUMAN (Ataxin-3 OS=Homo sapiens GN=ATXN3 PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.193e-28
Identity = 59/133 (44.36%), Postives = 85/133 (63.91%), Query Frame = 3
Query:  300 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSL 698
            ++HE QE  LCA HC+N +LQG +FS  +L+++A  LD  ER  M EG V +     FL + S N+   G FSIQV+  AL+VW L++I  N P  +  +IDP  E +FIC+  +HWF +RK+  +W+N +SL
Sbjct:    4 IFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRTFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSL 136          
BLAST of FC930303 vs. ExPASy Swiss-Prot
Match: ATX3_RAT (Ataxin-3 OS=Rattus norvegicus GN=Atxn3 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.034e-28
Identity = 59/133 (44.36%), Postives = 85/133 (63.91%), Query Frame = 3
Query:  300 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSL 698
            ++HE QE  LCA HC+N +LQG +FS  +L+++A  LD  ER  M EG V +     FL + S N+   G FSIQV+  AL+VW L++I  N P  +  +IDP  E +FIC+  +HWF +RK+  +W+N +SL
Sbjct:    4 IFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERLRMAEGGVTSEDYRTFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSL 136          
BLAST of FC930303 vs. ExPASy Swiss-Prot
Match: ATX3_MOUSE (Ataxin-3 OS=Mus musculus GN=Atxn3 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.034e-28
Identity = 59/133 (44.36%), Postives = 85/133 (63.91%), Query Frame = 3
Query:  300 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSL 698
            ++HE QE  LCA HC+N +LQG +FS  +L+++A  LD  ER  M EG V +     FL + S N+   G FSIQV+  AL+VW L++I  N P  +  +IDP  E +FIC+  +HWF +RK+  +W+N +SL
Sbjct:    4 IFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERLRMAEGGVTSEDYRTFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSL 136          
BLAST of FC930303 vs. ExPASy Swiss-Prot
Match: ATX3_CHICK (Ataxin-3 OS=Gallus gallus GN=ATXN3 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.470e-28
Identity = 59/133 (44.36%), Postives = 84/133 (63.16%), Query Frame = 3
Query:  300 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSL 698
            ++HE QE  LCA HC+N +LQG +FS  +L+++A  LD  ER  M EG V +     FL + S N+   G FSIQV+  AL+VW L++I  N P  +   IDP  E +FIC+  +HWF +RK+  +W+N +SL
Sbjct:    4 IFHERQEGSLCAQHCLNNLLQGEYFSPVELSSIAQQLDEEERMRMAEGGVSSEEYRTFLQQPSVNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLGIDPINEKSFICNYKEHWFTVRKLGKQWFNLNSL 136          
BLAST of FC930303 vs. ExPASy Swiss-Prot
Match: ATX3L_HUMAN (Putative ataxin-3-like protein OS=Homo sapiens GN=ATXN3L PE=5 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.722e-27
Identity = 61/135 (45.19%), Postives = 81/135 (60.00%), Query Frame = 3
Query:  300 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYA 704
            ++HE QE  LCA HC+N +LQG +FS  +LA++A  LD  ER  M EG V +     FL + S N+   G FSIQV+  AL+ W L++I  N P  +   IDP  E +FIC+   HWF IRK    W+N +SL A
Sbjct:    4 IFHEKQEGFLCAQHCLNNLLQGEYFSPVELASIAHQLDEEERMRMAEGGVTSEEYLAFLQQPSENMDDTGFFSIQVISNALKFWGLEIIHFNNPEYQKLGIDPINERSFICNYKQHWFTIRKFGKHWFNLNSLLA 138          
BLAST of FC930303 vs. ExPASy Swiss-Prot
Match: ATX3_CAEEL (Ataxin-3 homolog OS=Caenorhabditis elegans GN=atx-3 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.047e-16
Identity = 44/133 (33.08%), Postives = 74/133 (55.64%), Query Frame = 3
Query:  300 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSL 698
            ++ E QE+ LCA H +N +LQ   +   DL  LA  +D+ E+Q++         + +     S N++  G FSIQVL+KALE + L++  +  P     + +P    A+IC+L +HWF +RK   +W+  +S+
Sbjct:   10 IFFEHQEAALCAQHALNMLLQDALYKWQDLRDLAIQMDKMEQQIL--------GNANPTPGRSENMNESGYFSIQVLEKALETFSLKLTNIENPAMVDYKNNPLTARAYICNLREHWFVLRKFGNQWFELNSV 134          
BLAST of FC930303 vs. ExPASy Swiss-Prot
Match: ATX3_CAEBR (Ataxin-3 homolog OS=Caenorhabditis briggsae GN=atx-3 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.400e-15
Identity = 41/133 (30.83%), Postives = 73/133 (54.89%), Query Frame = 3
Query:  300 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSL 698
            ++ E Q++ LCA H +N +LQ   F+  +L  LA  +D+ E  ++         +       S N++  G FSIQV++KALE +DL++I +  P     + +P    A++ +L +HWF +RK   +W+  +S+
Sbjct:   11 IFFERQQAALCAQHALNMLLQDSLFTYENLRDLARQMDQMEHDIL--------GNNANAVGRSENMNDSGFFSIQVIEKALETFDLKLINMENPAMAEFKANPLTARAYVLNLREHWFVLRKFGNQWFELNSV 135          
The following BLAST results are available for this feature:
BLAST of FC930303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
ATX3H_ARATH6.912e-6986.99Ataxin-3 homolog OS=Arabidopsis thaliana GN=At3g54... [more]
ATX3_ORYSJ1.887e-5877.40Putative ataxin-3 homolog OS=Oryza sativa subsp. j... [more]
ATX3_HUMAN1.193e-2844.36Ataxin-3 OS=Homo sapiens GN=ATXN3 PE=1 SV=3[more]
ATX3_RAT2.034e-2844.36Ataxin-3 OS=Rattus norvegicus GN=Atxn3 PE=2 SV=1[more]
ATX3_MOUSE2.034e-2844.36Ataxin-3 OS=Mus musculus GN=Atxn3 PE=1 SV=2[more]
ATX3_CHICK3.470e-2844.36Ataxin-3 OS=Gallus gallus GN=ATXN3 PE=2 SV=1[more]
ATX3L_HUMAN1.722e-2745.19Putative ataxin-3-like protein OS=Homo sapiens GN=... [more]
ATX3_CAEEL3.047e-1633.08Ataxin-3 homolog OS=Caenorhabditis elegans GN=atx-... [more]
ATX3_CAEBR4.400e-1530.83Ataxin-3 homolog OS=Caenorhabditis briggsae GN=atx... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34006A06EF PostHarvC1 Citrus clementina cDNA clone C34006A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930303 ID=FC930303; Name=FC930303; organism=Citrus clementina; type=EST; length=707bp
GGGGCAAGTCTGAAACCCTCAGTACGCGTTCTCAATGACTCCTTACTTTC
TTCAAGTCACGCCAAGCAAAGCAAATACCGATTATATATTTATATTTATT
TAATGAATAAAATTATAAATTCTTTTCCCTCATCTTCCTCTTCTCTCCAT
CGAACATTCGAAACTGAAAAACCTTTCCTAAGAAACCCGCCGTTACAATA
ATATCGCAAATAGAAAAAAAAAAAATCTAGGTTTTGTTACCTGGTGCACA
TAAGAGTTTGTTTTTTTTATTAATGGAAGGGGCGAGCAACGGAGGGATGT
TGTACCACGAGGTACAAGAGTCGAAGCTATGCGCGGTGCATTGCGTGAAC
ACGGTGTTACAAGGTCCGTTTTTCTCGGAGTTCGATTTGGCGGCGCTGGC
TTCGGATCTCGATCGTAGTGAGCGCCAGGTGATGCTCGAAGGTCGCGTCC
CCGCTGCTTCCTCCGGCGATTTCCTCACCGAGGAGTCTCATAACGTCTCT
CTCGACGGCGATTTCAGTATCCAGGTTCTGCAAAAGGCTTTAGAGGTGTG
GGATCTGCAAGTCATTCCCCTTAACTGCCCAATTGCTGAACCTGCCCAGA
TTGACCCTGAGCTAGAAAATGCATTTATCTGTCATTTGCACGACCACTGG
TTCTGTATCAGGAAAGTGAATGGAGAATGGTATAATTTTGACAGTCTTTA
TGCAGCC
back to top