FC930313

Overview
NameFC930313
Unique NameFC930313
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8380 contig Ccv1_Contig8380:571..1292. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930313 vs. ExPASy Swiss-Prot
Match: FBX6_ARATH (F-box only protein 6 OS=Arabidopsis thaliana GN=FBX6 PE=2 SV=1)

HSP 1 Score: 380.563 bits (976), Expect = 4.676e-105
Identity = 172/235 (73.19%), Postives = 206/235 (87.66%), Query Frame = 3
Query:    3 FPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFYTITHENVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPLSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPAPLHLNDHTLAECG 707
            FP+DL+E V++RLP+ATFF+FR+VC+KWN+L+ S SFS+   ++PQ IPWFYTITHENVNSG +YDPSLKKWHHP I +LP K I+LP+ASAGGLVCFLDIGHRNFYV NPLT+SF+ELPARS KVWSRVAVGMTLNGNSTS GYK+LWVGC+GEYE+YDSL N WT+ G++PSNIKLP+ LNF+SQ V++   LYFM +DPEGI+SY+MV+G WKQFIIP P  L+DHTLA CG
Sbjct:  120 FPQDLFEDVVSRLPMATFFQFRAVCRKWNALIDSDSFSRCFTELPQTIPWFYTITHENVNSGQVYDPSLKKWHHPIIPALPKKSIVLPMASAGGLVCFLDIGHRNFYVSNPLTKSFRELPARSFKVWSRVAVGMTLNGNSTSHGYKVLWVGCEGEYEVYDSLSNVWTKRGTIPSNIKLPVLLNFKSQPVAIHSTLYFMLTDPEGILSYDMVSGKWKQFIIPGPPDLSDHTLAACG 354          
BLAST of FC930313 vs. ExPASy Swiss-Prot
Match: FBX13_ARATH (F-box only protein 13 OS=Arabidopsis thaliana GN=FBX13 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.322e-18
Identity = 64/215 (29.77%), Postives = 110/215 (51.16%), Query Frame = 3
Query:    9 EDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFYTITHENVNSGAMYDPSLKKWHHPTISSL--PTKMIILPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRV-AVGMTLNGNSTSSGYKILWVGCDGE-----YEIYDSLRNSWTRPGSMPSNIKLPLSLNFRSQAVSVDGILYFMRSDPEGIVSYN 629
            +D+ E V++ LP + FFR  SVC++W S   S SF   C+Q+P   PWF+ I +++ +S  ++D +   W +          +   +PVAS+GGL+C+      +F + NPLT S +++P++       + AV MT     T S Y ++ +   GE     ++IY+S  +SW++   + S      SL+      S  G +YF+      +V+ N
Sbjct:  133 DDVLERVLSWLPTSCFFRMSSVCKRWKSSQTSKSFKLACSQIPTRDPWFFMIDNDSNSSSFVFDSTENSWKNLNRRDFLHHHRQDFIPVASSGGLLCYRCSISGDFLLRNPLTGSSRDIPSQDNNNNKPLQAVAMTTT-TVTPSSYTLVTI--SGEIPNLSFKIYESNADSWSKDQELESVKNNDSSLHDDYDTDS--GTVYFLSKQGNVVVASN 342          
BLAST of FC930313 vs. ExPASy Swiss-Prot
Match: FK111_ARATH (F-box/kelch-repeat protein At5g15710 OS=Arabidopsis thaliana GN=At5g15710 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.649e-17
Identity = 72/239 (30.13%), Postives = 107/239 (44.77%), Query Frame = 3
Query:    6 PEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFYTI--THENVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNF--YVCNPLTQSFKELPA-------RSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPLSLNFRSQAVS-VDGILYFMRSDPEGIVSYNMVTGVWKQFIIPAPLHLND 686
            PEDL   ++AR+P    FR RSVC+KWN +L+ +SF +  + V    P   T       +   +++   LK W+    + LP     L V S+GGLVCF  +    F   VCNPL QS++ LP+       + + V  R      +   S   G K L        E+YDS  + W+    MP       ++N  S  ++  D  LY     P G++ Y + +G W+      P  L D
Sbjct:  108 PEDLLNEILARVPPFMIFRIRSVCKKWNLILQDNSFLKFHSNVSSHGPCLLTFWKNSPQIPQCSVFSLPLKTWYKIPFTFLPPWAFWL-VGSSGGLVCFSGLDGLTFRTLVCNPLMQSWRTLPSMHYNQQRQLIMVVDRSDKSFKVIATSDIYGDKSL------PTEVYDSKTDKWSLHQIMP-------AVNLCSSKMAYCDSRLYLETLSPLGLMMYRLDSGQWEHIPAKFPRSLLD 332          
BLAST of FC930313 vs. ExPASy Swiss-Prot
Match: FBK77_ARATH (F-box/kelch-repeat protein At3g61590 OS=Arabidopsis thaliana GN=At3g61590 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15
Identity = 46/121 (38.02%), Postives = 72/121 (59.50%), Query Frame = 3
Query:    6 PEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCA--QVPQGIPWFYTITHENVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRN-FYVCNPLTQSFKEL 359
            P+DL E +++ LPIA+ FR  +VC++WN ++ S  F  + +   V Q  PW++  T  +  SG  YDP ++KW+   +  + T      VAS+ GLVCF+D   RN  YV NP+T+ ++ L
Sbjct:   44 PDDLLERILSFLPIASIFRAGTVCKRWNEIVSSRRFLCNFSNNSVSQR-PWYFMFTTTDDPSGYAYDPIIRKWYSFDLPCIETSNWF--VASSCGLVCFMDNDCRNKIYVSNPITKQWRTL 161          
BLAST of FC930313 vs. ExPASy Swiss-Prot
Match: UFO_ARATH (Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis thaliana GN=UFO PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.646e-12
Identity = 65/263 (24.71%), Postives = 112/263 (42.59%), Query Frame = 3
Query:    6 PEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQ-VPQGIPWFYTITHENVNS-----------------GAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFL--DIGHRNFYVCNPLTQSFKELPARS-VKVWSRV-------AVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPLSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPAPLHLNDHTLAECGG 710
            P  L + VIA LP   FFR R VC+++ SLL S++F +   Q +P     F    H+ + S                 G ++DP+  +W+  + + +P+     P  S+GGLV ++  + G +   +CNPL  S  +LP  S  +++  +       ++ +T+ G+   S Y +  +  +  +       + W    S+P    L        + V V G  Y M   P  ++SY +    W +   P    L   +L E  G
Sbjct:   51 PPPLLDRVIAFLPPPAFFRTRCVCKRFYSLLFSNTFLETYLQLLPLRHNCFLFFKHKTLKSYIYKRGGTNDDDSNKAEGFLFDPNEIRWYRLSFAYIPSG--FYPSGSSGGLVSWVSEEAGLKTILLCNPLVGSVSQLPPISRPRLFPSIGLSVTPTSIDVTVAGDDLISPYAVKNLSSESFHVDAGGFFSLWAMTSSLPRLCSLE-----SGKMVYVQGKFYCMNYSPFSVLSYEVTGNRWIKIQAPMRRFLRSPSLLESKG 306          
BLAST of FC930313 vs. ExPASy Swiss-Prot
Match: FK119_ARATH (F-box/kelch-repeat protein At5g43190 OS=Arabidopsis thaliana GN=At5g43190 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 65/225 (28.89%), Postives = 101/225 (44.89%), Query Frame = 3
Query:    6 PEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSF-SQHCAQVPQGIPWFYTITH-ENVNSGAMYDPSLKKWHH-PTISSLPTKMIILPVASAGGLVCFL--DIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYE------IYDSLRNSWTRPGSMPSNIKLPLSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVW 647
            P  L E +++ LP  T    RS+ +   SL+ S SF S H   +P     F  ++H ++ NS  +++P+L  W   P   SL        ++S+ GL+CF        +  + NPLT+S     +RS+K+         L+  ++  GYKI  +             +YDS   SW + G +       L   F    V  +G LYF RS+P  IVS ++  G W
Sbjct:   52 PNHLLEHILSLLPFKTLLTLRSISRHLRSLILSPSFISDHSFSLPS----FLLLSHPQSFNSFPLFNPNLISWCTLPLPRSLSLTCASSLLSSSNGLLCFSLSPSSVSSLSIFNPLTRS-----SRSIKLPCYPFPFELLSLVTSPKGYKIFTLCSSSSAASSRSVCLYDSGDRSWRKFGGVDQ----VLPRGFNQDGVFYNGSLYFARSEPFLIVSVDLNDGKW 263          
The following BLAST results are available for this feature:
BLAST of FC930313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
FBX6_ARATH4.676e-10573.19F-box only protein 6 OS=Arabidopsis thaliana GN=FB... [more]
FBX13_ARATH3.322e-1829.77F-box only protein 13 OS=Arabidopsis thaliana GN=F... [more]
FK111_ARATH1.649e-1730.13F-box/kelch-repeat protein At5g15710 OS=Arabidopsi... [more]
FBK77_ARATH4.489e-1538.02F-box/kelch-repeat protein At3g61590 OS=Arabidopsi... [more]
UFO_ARATH4.646e-1224.71Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis thali... [more]
FK119_ARATH6.708e-1128.89F-box/kelch-repeat protein At5g43190 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionC34006B04EF PostHarvC1 Citrus clementina cDNA clone C34006B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930313 ID=FC930313; Name=FC930313; organism=Citrus clementina; type=EST; length=721bp
AGTTCCCAGAAGACCTTTATGAAGCTGTCATTGCACGACTTCCTATTGCC
ACCTTCTTTCGCTTCCGTTCAGTTTGCCAGAAATGGAATTCCTTACTGAA
ATCACATAGTTTCTCTCAGCATTGTGCCCAAGTCCCGCAAGGAATTCCCT
GGTTTTATACCATTACTCATGAAAATGTGAATTCTGGAGCCATGTATGAT
CCTTCCCTAAAGAAATGGCACCATCCTACTATATCTTCTCTGCCTACAAA
GATGATCATCTTGCCAGTTGCTTCGGCTGGGGGTCTAGTTTGCTTTCTTG
ACATTGGTCATCGGAACTTCTATGTATGCAACCCTTTAACTCAATCATTC
AAAGAATTGCCAGCTAGGTCAGTTAAGGTCTGGTCCCGTGTTGCTGTGGG
GATGACTTTGAATGGAAATTCAACTAGTAGTGGTTACAAGATTTTATGGG
TCGGATGTGATGGCGAGTATGAAATCTATGACTCGCTAAGGAACTCTTGG
ACACGACCTGGAAGCATGCCCTCAAACATAAAGCTGCCACTATCATTGAA
CTTCCGTTCACAAGCAGTCTCAGTTGACGGCATACTTTATTTCATGCGTT
CAGACCCTGAAGGGATTGTGTCCTACAATATGGTTACTGGGGTTTGGAAG
CAGTTCATAATCCCAGCCCCACTGCATTTGAACGACCACACACTCGCTGA
GTGTGGGGGGGCGGATCATGC
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