FC930316

Overview
NameFC930316
Unique NameFC930316
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930316_ssr45 microsatellite FC930316_ssr45:45..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12138 contig Ccv1_Contig12138:398..1127. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: PLST4_ARATH (Plastidic glucose transporter 4 OS=Arabidopsis thaliana GN=At5g16150 PE=1 SV=2)

HSP 1 Score: 286.574 bits (732), Expect = 9.483e-77
Identity = 164/249 (65.86%), Postives = 184/249 (73.90%), Query Frame = 1
Query:    4 AIKASVCFDARNR-----RRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMKLTRATQGVETLFR-STVKPRSVKAQASA-GDIEEATPFKPQEKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            A+K +  F  + R     R        FA  +S+A       + S     MG  L RA  G++++   S+VK RSV+AQAS+ GD EEA P +  E KSSG VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG+LADKFGRTRTFQLDA+PLA GAFLCATAQSVQTMI+GR+L           VPLYISEISP  IRGALGSVNQLFIC+GILAAL+
Sbjct:    7 AVKGNAAFAFQRRTFSSDRSTTSTGIRFAGYKSLATTGPLYCSGS---EAMGATLARADNGIQSVMSFSSVKARSVRAQASSDGDEEEAIPLR-SEGKSSGTVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGALADKFGRTRTFQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICIGILAALI 251          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: PLST1_ARATH (Probable plastidic glucose transporter 1 OS=Arabidopsis thaliana GN=At1g05030 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.989e-30
Identity = 74/198 (37.37%), Postives = 113/198 (57.07%), Query Frame = 1
Query:  154 TRATQGVETLFRSTVKPRSVKAQASA--GDIEEATPFKPQEKKSSGV----VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            +R        FRS+ + + V   ++    D  E +P  P EK S+ +      P V VA +   LFGYH+GV+NG +  +A++LG   N++L+G +VS  +AGA +GS   G L DKFG  RTFQ+  +PL  GA + A A S+  ++ GR L           VP+YISE++P   RG+LG++ Q+  C+GI+ +L+
Sbjct:   29 SRKASSFSRFFRSSKRKKRVTTLSTKKPDDDHEISPVPP-EKFSADLGWLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGFEGNSILEGLVVSIFIAGAFIGSIVAGPLVDKFGYRRTFQIFTIPLILGALVSAQAHSLDEILCGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGIIFSLL 225          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: PLST3_ARATH (Probable plastidic glucose transporter 3 OS=Arabidopsis thaliana GN=At1g79820 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.640e-28
Identity = 64/145 (44.14%), Postives = 91/145 (62.76%), Query Frame = 1
Query:  292 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAAL 726
            LP V VA L ++LFGYHLGVVN  LE ++ DLG + NT+ +G +VS+ L GA +GS   G +AD  GR R FQL A+P+  GA + A+ +S+  M++GR L             LY++E+SP  +RG  GS  Q+  C+G+L +L
Sbjct:   55 LPHVLVASLTSLLFGYHLGVVNETLESISIDLGFSGNTIAEGLVVSTCLGGAFIGSLFSGLVADGVGRRRAFQLSALPMIVGASVSASTESLMGMLLGRFLVGIGMGIGPSVTALYVTEVSPAYVRGTYGSSTQIATCIGLLGSL 199          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: PLST2_ARATH (Probable plastidic glucose transporter 2 OS=Arabidopsis thaliana GN=At1g67300 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.233e-28
Identity = 63/145 (43.45%), Postives = 90/145 (62.07%), Query Frame = 1
Query:  292 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAAL 726
            LP V VA + + LFGYHLGVVN  LE ++ DLG + +T+ +G +VS  L GA +GS   G +AD FGR R FQ+ A+P+  GAF+   + S+  M++GR L             LY++E+SP  +RG  GS  Q+  C+G++AAL
Sbjct:   52 LPHVLVATISSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRRRAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTYGSFIQIATCLGLMAAL 196          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: YWTG_BACSU (Putative metabolite transport protein ywtG OS=Bacillus subtilis GN=ywtG PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.884e-23
Identity = 61/153 (39.87%), Postives = 87/153 (56.86%), Query Frame = 1
Query:  271 KKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            KK S + L F G   LG  L+GY  GV++GA+ ++ K+LG+  N   +G +VSSLL GA +GS   G L D+FGR +     A+    G    A A +   M++ R++           VPLY+SE++P   RGAL S+NQL I VGIL + +
Sbjct:    2 KKQSNIWLYFFGA--LGGALYGYDTGVISGAILFMKKELGL--NAFTEGLVVSSLLVGAILGSGAAGKLTDRFGRKKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIVPLYLSELAPKHKRGALSSLNQLMITVGILLSYI 150          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: GALP_ECOLI (Galactose-proton symporter OS=Escherichia coli (strain K12) GN=galP PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.487e-21
Identity = 57/155 (36.77%), Postives = 88/155 (56.77%), Query Frame = 1
Query:  259 KPQEKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAA 723
            K Q + +  +      +A L  +LFG  +GV+ GAL ++A +  I  +T  Q W+VSS++ GA VG+   G L+ K GR ++  + A+   AG+   A A +V+ +I+ RVL            PLY+SEI+P  IRG++ S+ QL I +GIL A
Sbjct:    5 KKQGRSNKAMTFFVCFLAALAGLLFGLDIGVIAGALPFIADEFQITSHT--QEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLILSRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGA 157          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: GALP_ECOL6 (Galactose-proton symporter OS=Escherichia coli O6 GN=galP PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.487e-21
Identity = 57/155 (36.77%), Postives = 88/155 (56.77%), Query Frame = 1
Query:  259 KPQEKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAA 723
            K Q + +  +      +A L  +LFG  +GV+ GAL ++A +  I  +T  Q W+VSS++ GA VG+   G L+ K GR ++  + A+   AG+   A A +V+ +I+ RVL            PLY+SEI+P  IRG++ S+ QL I +GIL A
Sbjct:    5 KKQGRSNKAMTFFVCFLAALAGLLFGLDIGVIAGALPFIADEFQITSHT--QEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLILSRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGA 157          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: CSBC_BACSU (Probable metabolite transport protein csbC OS=Bacillus subtilis GN=csbC PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 6.247e-20
Identity = 51/138 (36.96%), Postives = 82/138 (59.42%), Query Frame = 1
Query:  316 LGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            LG +L+GY  GV++GAL ++  D+ +   T+ +G +VS LL GA  GS   G+ +D++GR +   + ++    GA  CA +Q++  +I  RV+           VP+Y+SE++P  IRG LG++N L I  GIL A +
Sbjct:   16 LGGLLYGYDTGVISGALLFINNDIPLT--TLTEGLVVSMLLLGAIFGSALSGTCSDRWGRRKVVFVLSIIFIIGALACAFSQTIGMLIASRVILGLAVGGSTALVPVYLSEMAPTKIRGTLGTMNNLMIVTGILLAYI 151          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: XYLT_LACBR (D-xylose-proton symporter OS=Lactobacillus brevis GN=xylT PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.428e-18
Identity = 52/153 (33.99%), Postives = 85/153 (55.56%), Query Frame = 1
Query:  271 KKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            K S+G V  F     LG +LFGY  GV++GA+ ++ K + +   +  QGW+VS++L GA +G+   G  +D+FGR +   L A+    GA   A +    T+II R++           +P Y++E++P+  RG + S+ QL +  GIL A +
Sbjct:    3 KVSTGFVYFF---GALGGLLFGYDTGVISGAILFIQKQMNLG--SWQQGWVVSAVLLGAILGAAIIGPSSDRFGRRKLLLLSAIIFFVGALGSAFSPEFWTLIISRIILGMAVGAASALIPTYLAELAPSDKRGTVSSLFQLMVMTGILLAYI 150          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: INT3_ARATH (Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.477e-18
Identity = 58/135 (42.96%), Postives = 76/135 (56.30%), Query Frame = 1
Query:  310 ACLGAILFGYHLGVVNGALEYLAKDLGIAEN-TVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVG 711
            A +G +LFGY+ GV+ GAL Y+ ++ G  +N T LQ  IVS  +AGA VG+  GG   DKFGR  +  +  V    GA +   A +   +I+GR+L            PLYISE+SP  IRGAL S N L I  G
Sbjct:   33 AGIGGLLFGYNTGVIAGALLYIKEEFGEVDNKTWLQEIIVSMTVAGAIVGAAIGGWYNDKFGRRMSVLIADVLFLLGALVMVIAHAPWVIILGRLLVGFGVGMASMTSPLYISEMSPARIRGALVSTNGLLITGG 167          
The following BLAST results are available for this feature:
BLAST of FC930316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PLST4_ARATH9.483e-7765.86Plastidic glucose transporter 4 OS=Arabidopsis tha... [more]
PLST1_ARATH2.989e-3037.37Probable plastidic glucose transporter 1 OS=Arabid... [more]
PLST3_ARATH1.640e-2844.14Probable plastidic glucose transporter 3 OS=Arabid... [more]
PLST2_ARATH6.233e-2843.45Probable plastidic glucose transporter 2 OS=Arabid... [more]
YWTG_BACSU7.884e-2339.87Putative metabolite transport protein ywtG OS=Baci... [more]
GALP_ECOLI1.487e-2136.77Galactose-proton symporter OS=Escherichia coli (st... [more]
GALP_ECOL61.487e-2136.77Galactose-proton symporter OS=Escherichia coli O6 ... [more]
CSBC_BACSU6.247e-2036.96Probable metabolite transport protein csbC OS=Baci... [more]
XYLT_LACBR3.428e-1833.99D-xylose-proton symporter OS=Lactobacillus brevis ... [more]
INT3_ARATH4.477e-1842.96Probable inositol transporter 3 OS=Arabidopsis tha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34006B07EF PostHarvC1 Citrus clementina cDNA clone C34006B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930316 ID=FC930316; Name=FC930316; organism=Citrus clementina; type=EST; length=730bp
GACGCAATCAAAGCGAGTGTATGCTTTGACGCCCGCAATCGGAGGCGTGC
GTGCGTGTTGGCTGCTGGCTTTGCTAACACCAGAAGTGTTGCTTTGAATT
GTAATTTTACTAGTAATAATAGTATTTGCATGAGAGATATGGGAATGAAG
CTCACACGTGCCACTCAGGGCGTTGAAACTCTGTTTAGATCAACGGTTAA
GCCCCGATCGGTGAAAGCTCAAGCCTCCGCTGGAGACATTGAAGAAGCTA
CTCCTTTCAAGCCTCAGGAGAAAAAATCTTCTGGAGTAGTTTTGCCTTTT
GTTGGGGTTGCTTGTTTGGGAGCTATTTTATTTGGTTACCACTTAGGGGT
TGTAAATGGCGCTCTTGAATACCTTGCCAAGGACCTTGGGATTGCTGAAA
ACACTGTCCTGCAAGGATGGATTGTCAGCTCATTACTTGCTGGTGCCACT
GTTGGTTCTTTTACTGGAGGATCATTGGCTGACAAATTTGGCAGAACAAG
GACTTTTCAGTTAGACGCAGTTCCCCTCGCAGCTGGAGCATTTCTATGTG
CTACTGCCCAGAGTGTACAGACTATGATAATTGGCCGCGTACTGGCAGGC
ATTGGAATTGGCATCTCATCTGCCATTGTACCACTTTATATATCTGAGAT
CTCACCAAACTGAATTCGTGGTGCTCTTGGATCAGTAAACCAACTTTTTA
TATGTGTTGGGATTCTTGCAGCATTGGTAG
back to top