FC930321

Overview
NameFC930321
Unique NameFC930321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC930321 vs. ExPASy Swiss-Prot
Match: UPL2_ARATH (E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.588e-43
Identity = 101/237 (42.62%), Postives = 144/237 (60.76%), Query Frame = 3 
Query:    6 GKVVNFIDGILLD-RPESCNPILLNCLYGHGVVQSVLMTFEATSQLLFAVNRTPASPMETDDGNVKQDEKEDADHA-WIYGPLASYGKLMDHMVTSSFILSPFTR-HLLSQP----LINGDIPFPRDAETFVKMLQSMVLKAVLPVWTHPQFTECSYDFITAIISIIRHIYSGV-----EVKNVSSSTNARITGPPPNETTISTIVEMGFSRPRAEEALRQVGSNSVELAMEWLFSH 680
            GKVV+ I  +  D R   C   ++N  Y HG  + +L TFEATSQLL+ V   P S   +   N K  E+    H+ W+   L +Y + +D+ V S+++LSP ++  LL QP    L  G  P PR+ ETFV+ LQS VL+ +LP+W HP F +C+ +F+ ++ S++ HIYSGV          +  TN R     P+E  +  IVEMGFSR RAE+ALR+VG+NSVE+AM+WLF++
Sbjct: 1079 GKVVDDITFLTFDTRRRVCFTAMVNSFYVHGTFKELLTTFEATSQLLWKV---PFSIRASSTENEKSGERNLWSHSKWLVDTLQNYCRALDYFVNSTYLLSPTSQTQLLVQPASVDLSIGLFPVPREPETFVRNLQSQVLEVILPIWNHPMFPDCNPNFVASVTSLVTHIYSGVVDTRENRSGATQGTNQRALPLQPDEAIVGMIVEMGFSRSRAEDALRRVGTNSVEMAMDWLFTN 1312
[Close]
BLAST of FC930321 vs. ExPASy Swiss-Prot
Match: UPL1_ARATH (E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 3.311e-41
Identity = 102/238 (42.86%), Postives = 144/238 (60.50%), Query Frame = 3 
Query:    6 GKVVNFIDGILLD-RPESCNPILLNCLYGHGVVQSVLMTFEATSQLLFAVNRT-PASPMETDDGNVKQDEKEDADHA-WIYGPLASYGKLMDHMVTSSFILSPFTR-HLLSQP----LINGDIPFPRDAETFVKMLQSMVLKAVLPVWTHPQFTECSYDFITAIISIIRHIYSGV-----EVKNVSSSTNARITGPPPNETTISTIVEMGFSRPRAEEALRQVGSNSVELAMEWLFSH 680
            GKVV+ I  +  D R   C   ++N  Y HG  + +L TFEATSQLL+ V  + PAS  E    N K  E+    H+ W+   L +Y + +D+ V S+++LSP ++  LL QP    L  G  P PR+ ETFV+ LQS VL  +LP+W HP F +C+ +F+ ++ S++ HIYSGV         V+   N R      +E+ +  IVEMGFSR RAE ALR+VG+NSVE+AM+WLF++
Sbjct: 1077 GKVVDDITFLSFDTRRRVCFTAMVNSFYVHGTFKELLTTFEATSQLLWTVPFSIPASSTE----NEKPGERNIWSHSKWLVDTLQNYCRALDYFVNSTYLLSPTSQTQLLVQPASVGLSIGLFPVPREPETFVRNLQSQVLDVILPIWNHPMFPDCNPNFVASVTSLVTHIYSGVVDARENRSGVTRGINQRALPLQLDESIVGMIVEMGFSRSRAEIALRRVGTNSVEMAMDWLFTN 1310
The following BLAST results are available for this feature:
BLAST of FC930321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UPL2_ARATH1.588e-4342.62E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis th... [more]
UPL1_ARATH3.311e-4142.86E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionC34006B12EF PostHarvC1 Citrus clementina cDNA clone C34006B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930321 ID=FC930321; Name=FC930321; organism=Citrus clementina; type=EST; length=682bp
ACTTTGGTAAAGTTGTTAATTTCATTGATGGCATTCTACTGGACAGGCCG
GAATCCTGTAATCCAATATTGTTAAATTGCTTATACGGGCATGGGGTTGT
TCAATCAGTTTTGATGACATTTGAAGCTACGAGTCAATTGCTTTTTGCGG
TTAACAGGACTCCTGCATCTCCAATGGAGACTGATGATGGAAATGTAAAA
CAAGATGAAAAGGAAGATGCAGATCATGCTTGGATCTATGGTCCCTTGGC
AAGTTATGGTAAACTTATGGATCACATGGTAACATCTTCTTTTATTTTAT
CTCCATTTACGAGACACTTGCTTTCACAGCCTCTTATAAATGGAGATATA
CCTTTCCCACGGGATGCTGAGACTTTTGTGAAGATGCTTCAATCCATGGT
ATTGAAGGCAGTGCTTCCTGTTTGGACTCATCCACAGTTTACTGAATGCA
GCTATGATTTCATTACTGCAATTATTTCTATCATTAGGCACATTTACTCT
GGGGTTGAAGTGAAAAATGTCAGTAGCAGTACCAATGCTCGTATTACTGG
CCCTCCTCCAAATGAAACAACTATTTCAACAATTGTGGAGATGGGTTTTT
CCAGGCCTAGGGCAGAGGAAGCTTTAAGGCAAGTTGGATCAAATAGCGTG
GAGCTGGCAATGGAGTGGTTATTTTCCCATCC
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