FC930348

Overview
NameFC930348
Unique NameFC930348
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930348 vs. ExPASy Swiss-Prot
Match: Y5195_ARATH (UPF0717 protein At5g11950 OS=Arabidopsis thaliana GN=At5g11950 PE=1 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.327e-75
Identity = 135/192 (70.31%), Postives = 160/192 (83.33%), Query Frame = 2
Query:  137 NNQSKFNRICVFCGSSAGKKSTYKDAAIELSKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMKQMEEYFPQHERVA 712
            N +S+F +ICVFCGS +G +  + DAAIEL  ELV R IDLVYGGGSVGLMGLIS+ VY+GG HV+G+IPK LMP EI+GETVG+V+ VADMH+RKA MA+ ++AFIALPGGYGT+EELLE+ITW+QLGIH K VGLLNVDGYYN+LL   D  VEEGFI P AR+I+VSAP AKELM++MEEY P H  VA
Sbjct:    4 NQRSRFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPKALMPIEISGETVGDVRVVADMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELMEKMEEYTPSHMHVA 195          
BLAST of FC930348 vs. ExPASy Swiss-Prot
Match: Y4923_PSEAE (UPF0717 protein PA4923 OS=Pseudomonas aeruginosa GN=PA4923 PE=3 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 3.299e-42
Identity = 84/178 (47.19%), Postives = 117/178 (65.73%), Query Frame = 2
Query:  161 ICVFCGSSAGKKSTYKDAAIELSKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMKQMEEYFP 694
            +CVFCG+S G    Y++AA+ L + L  R + LVYGGG+VGLMG ++ A    G  VIG+IP++L   EI  + +  ++ V  MH RKA MA+ +DAFIALPGG GTLEEL EV TW QLG H KP+GLL V+G+Y+ LLTF+D  V+E F+    R ++    + + L+  +  + P
Sbjct:    6 VCVFCGASPGASPVYQEAAVALGRHLAERGLTLVYGGGAVGLMGTVADAALAAGGEVIGIIPQSLQEAEIGHKGLTRLEVVDGMHARKARMAELADAFIALPGGLGTLEELFEVWTWGQLGYHAKPLGLLEVNGFYDPLLTFLDHLVDERFVRAEHRGMLQRGASPEALLDALAAWTP 183          
BLAST of FC930348 vs. ExPASy Swiss-Prot
Match: YVDD_BACSU (UPF0717 protein yvdD OS=Bacillus subtilis GN=yvdD PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.001e-39
Identity = 77/176 (43.75%), Postives = 114/176 (64.77%), Query Frame = 2
Query:  161 ICVFCGSSAGKKSTYKDAAIELSKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMKQMEEY 688
            ICVF GS+ G    YK  A EL   +  + I LVYGG  VGLMG I+ A+ + G   IGV+P  L   E+  + + E+  V  MH+RKA+M++ +D FI++PGG+GT EEL EV+ WAQ+GIH KP+GL NV+GY+  ++  +  +++EGF + +   +I S+    EL++QM+ Y
Sbjct:    4 ICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMENGGTAIGVMPSGLFSGEVVHQNLTELIEVNGMHERKAKMSELADGFISMPGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHLKLIHSSSRPDELIEQMQNY 179          
BLAST of FC930348 vs. ExPASy Swiss-Prot
Match: YJF5_YEAST (UPF0717 protein YJL055W OS=Saccharomyces cerevisiae GN=YJL055W PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.705e-36
Identity = 84/202 (41.58%), Postives = 116/202 (57.43%), Query Frame = 2
Query:  161 ICVFCGSSAGKKSTYKDAAIELSKELVARNIDLVYGGGSVGLMGLISQAVY--DGGRHVIGVIPKTLMPREIT------------------------GETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMKQMEEY 688
            +CV+CGSS G K+ Y ++A EL          LVYGGG+ GLMG I+++    D    V G+IP  L+ +E T                         E  GE   V DMH RK  MA  SDAF+A+PGGYGT EE++E ITW+QLGIH+KP+ L N+DG+Y+ LL F+  +++E FIS     II  A   +E++ ++E+Y
Sbjct:   21 VCVYCGSSFGAKALYSESAEELGALFHKLGWKLVYGGGTTGLMGKIARSTMGPDLSGQVHGIIPNALVSKERTDEDKEDVNKALLESVENHKGATPISEEYGETTIVPDMHTRKRMMANLSDAFVAMPGGYGTFEEIMECITWSQLGIHNKPIILFNIDGFYDKLLEFLKHSIQERFISVKNGEIIQVASTPQEVVDKIEKY 222          
BLAST of FC930348 vs. ExPASy Swiss-Prot
Match: FAS6_RHOFA (UPF0717 protein ORF6 in fasciation locus OS=Rhodococcus fascians GN=fas6 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.640e-34
Identity = 76/163 (46.63%), Postives = 103/163 (63.19%), Query Frame = 2
Query:  161 ICVFCGSSAGKKSTYKDAAIELSKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPK--TLMPREITGETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIV 643
            + VFCG+  G+ + Y   A  + + +    + LVYGG  VGLMG ++ A  D G  V+GVIP+  T +P E     + E+  V DMHQRKA MA+  DAFIALPGG GT EE  EV+TW+ LG+H+KP  LLN + YY  LL++I+ A  EGFI+P  R  ++
Sbjct:   22 VTVFCGAMPGRGTKYGQLAEGMGRAIARSKLRLVYGGARVGLMGTLANAALDSGGTVVGVIPESFTAIP-EAAHHGLTELHVVHDMHQRKALMAELGDAFIALPGGVGTAEEFFEVLTWSHLGLHNKPCVLLNDNEYYRPLLSYIEHAAVEGFITPATRSRVI 183          
The following BLAST results are available for this feature:
BLAST of FC930348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
Y5195_ARATH1.327e-7570.31UPF0717 protein At5g11950 OS=Arabidopsis thaliana ... [more]
Y4923_PSEAE3.299e-4247.19UPF0717 protein PA4923 OS=Pseudomonas aeruginosa G... [more]
YVDD_BACSU2.001e-3943.75UPF0717 protein yvdD OS=Bacillus subtilis GN=yvdD ... [more]
YJF5_YEAST2.705e-3641.58UPF0717 protein YJL055W OS=Saccharomyces cerevisia... [more]
FAS6_RHOFA5.640e-3446.63UPF0717 protein ORF6 in fasciation locus OS=Rhodoc... [more]
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Properties
Property NameValue
Genbank descriptionC34006E10EF PostHarvC1 Citrus clementina cDNA clone C34006E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930348 ID=FC930348; Name=FC930348; organism=Citrus clementina; type=EST; length=719bp
GAATAAACTTTGCAGGTGACTTCAAAAAAAAAAAAAAAGAGAGAAAAAAA
ACAGTGAGGATATTTGTTCATAGTTTCTTTGGTTGTGAGAAAAACAAATA
GAAATGGAAATGGAAATGGAGATGGAGATGGAAATGAATAACCAATCAAA
ATTCAACAGGATTTGTGTGTTCTGTGGAAGCAGTGCTGGAAAGAAAAGCA
CTTACAAAGATGCTGCCATTGAGCTTAGCAAAGAACTTGTTGCAAGAAAT
ATTGATCTTGTTTATGGAGGAGGGAGTGTTGGTTTGATGGGTTTGATTTC
TCAAGCTGTTTATGATGGTGGGCGCCACGTCATTGGAGTTATCCCCAAGA
CCCTAATGCCTAGAGAGATTACTGGAGAAACAGTAGGGGAAGTGAAGCCA
GTAGCTGATATGCACCAAAGGAAAGCAGAAATGGCTAAACATTCCGATGC
TTTTATTGCTTTGCCTGGTGGTTATGGAACACTTGAAGAGCTGCTGGAAG
TGATAACCTGGGCTCAACTGGGCATCCACGACAAGCCGGTAGGATTGCTG
AATGTAGATGGATATTACAACTCCTTATTGACATTCATTGACAAAGCAGT
GGAGGAAGGCTTCATTAGTCCCAACGCTCGCCATATCATAGTCTCTGCCC
CTAATGCAAAAGAACTAATGAAACAAATGGAGGAATATTTTCCGCAGCAT
GAGAGGGTCGCCCTCCAGC
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