FC930370

Overview
NameFC930370
Unique NameFC930370
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930370_ssr8 microsatellite FC930370_ssr8:8..28. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14314 contig Ccv1_Contig14314:2..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC930370 vs. ExPASy Swiss-Prot
Match: YAI5_SCHPO (Uncharacterized protein C24B11.05 OS=Schizosaccharomyces pombe GN=SPAC24B11.05 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12
Identity = 49/129 (37.98%), Postives = 65/129 (50.39%), Query Frame = 2 
Query:  176 LLFDLDDTLYPYSSGIAAACGQNIKDYMVEKLGIERSKIEDLGNLLYKNYGTTMAGLRAIGYDFDYDDYHSFVHGRLPYEN-LKPDPVXXXXXXXXXXXK--IIFTNADKVHAVKVLSRLGLEDCFEGI 553
            + FDLD+ LYP S  I       I  +  +KLGI   + E L  + Y++YG  + GL  + ++ D  DY   V   LP E  +K D V               IFTNA  VHA +VL  LG+EDCF+GI
Sbjct:    8 IFFDLDNCLYPKSYKIHNMMAARITAFFSDKLGIPTEEAERLREVYYRHYGIAIRGL-VLHHEIDAVDYDQRVDQSLPLEKVIKKDEVLREMLLELRKKYKCWIFTNAYIVHANRVLKYLGIEDCFDGI 135
The following BLAST results are available for this feature:
BLAST of FC930370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YAI5_SCHPO2.702e-1237.98Uncharacterized protein C24B11.05 OS=Schizosacchar... [more]
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Properties
Property NameValue
Genbank descriptionC34006G10EF PostHarvC1 Citrus clementina cDNA clone C34006G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930370 ID=FC930370; Name=FC930370; organism=Citrus clementina; type=EST; length=716bp
GCTCTCGCTTCTTCTTCTTCTTCTTCTTCACCTGCGTCTTCATTATCTTT
GCATTGCTTCAAATTCGCTCAAACAAAGCTCTCTTTCATTCATACAAGTC
ATTCTTTTTCTGGTCTTTTCAATCAAAATGGAGTACGAAGGCCGTTACCG
GATGGCTGCTGCGAAATATGATTGCCTTCTGTTTGATCTAGATGATACCC
TGTATCCCTACAGTTCTGGTATTGCTGCAGCATGCGGACAGAACATCAAA
GATTATATGGTTGAAAAGCTTGGCATTGAGAGGAGCAAAATTGAGGACTT
GGGTAACTTGTTGTACAAGAATTACGGGACAACAATGGCTGGACTCAGGG
CTATTGGCTATGACTTTGACTATGATGACTATCACAGTTTTGTGCATGGG
AGGTTGCCTTATGAGAACTTGAAACCAGATCCTGTTTTGAGGAGTCTTTT
ACTGAGCCTGCCCCTAAGGAAAATTATCTTCACAAATGCGGACAAAGTTC
ATGCTGTTAAAGTTCTCAGCAGGCTCGGATTGGAAGACTGTTTTGAAGGG
ATTATATGCTTTGAGACTCTGAATCCGACTCACAAGAACAATGTTTCTGA
TGATGAGGATGACATTGCGTTTGTGGAATCGGCTGCTTCCACCACAACTA
GCGCCTATGGCCCTGAAATTTTCGACATAATTGGTCATTTTGCTCAACCA
AATCAAAGCTGGTTGC
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