FC930395

Overview
NameFC930395
Unique NameFC930395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930395 vs. ExPASy Swiss-Prot
Match: TLP7_ARATH (Tubby-like F-box protein 7 OS=Arabidopsis thaliana GN=TULP7 PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 9.320e-74
Identity = 143/227 (63.00%), Postives = 165/227 (72.69%), Query Frame = 1
Query:   37 MSLRNSCLSRRISRSF----GEAHKSSKETELNAADDSVVSSTTSAPMDXXXXXXXXXXXXXXLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGCKPLSSRGSRR 705
            M L  S LSRRIS SF    GE   + +   +    +   SS+ SA                 +LPELLGEIIRRVE TED WP R++VV CACV K+WREIT D  +S   SGKITFPSCLK PGPR+F +QCLI+RNKKTSTFYLYLALTPSF++KGKFLLAARR+R GA++EYIISLDA D SQGSNAYVGKL SDFLGTNFT+YDS+PPHNG KP + + SRR
Sbjct:    1 MPLSRSLLSRRISNSFRFHQGETTTAPESESIPPPSNMAGSSSWSA-----------------MLPELLGEIIRRVEETEDRWPQRRDVVTCACVSKKWREITHDFARSSLNSGKITFPSCLKLPGPRDFSNQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRFRTGAYTEYIISLDADDFSQGSNAYVGKLRSDFLGTNFTVYDSQPPHNGAKPSNGKASRR 210          
BLAST of FC930395 vs. ExPASy Swiss-Prot
Match: TLP1_ORYSJ (Tubby-like F-box protein 1 OS=Oryza sativa subsp. japonica GN=TULP1 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.396e-61
Identity = 112/165 (67.88%), Postives = 135/165 (81.82%), Query Frame = 1
Query:  214 LLPELLGEIIRRVETTE-DSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGCKPLSSRGSRR 705
            LLPEL+ E++RRVE +  + WP R++VV+CACVC+RWR+    +V+ P  SGKITFPS LKQPGPREFP QC I+RNKK STFYLYL LT +  +KGKFL+AARR+RRG H+EYI+SLDA DLSQGSNAY+GKL SDF GTNF IYDS+PP++G K  SSR SRR
Sbjct:   37 LLPELMSEVVRRVEASGGERWPARKDVVSCACVCRRWRDAAVAVVRPPAESGKITFPSSLKQPGPREFPMQCFIKRNKKNSTFYLYLGLTNATVDKGKFLMAARRFRRGPHTEYIVSLDADDLSQGSNAYMGKLRSDFWGTNFKIYDSKPPYDGAKASSSRSSRR 201          
BLAST of FC930395 vs. ExPASy Swiss-Prot
Match: TLP9_ORYSJ (Tubby-like F-box protein 9 OS=Oryza sativa subsp. japonica GN=TULP9 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.801e-59
Identity = 107/164 (65.24%), Postives = 129/164 (78.66%), Query Frame = 1
Query:  214 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGCKPLSSRGSRR 705
            LLPELL EI+RRV+   + WP R++VVACACVC+RWR+    +V+ P   G+ITFPS LKQPGPR+ P  C IRRNKK STFYLYL+LT + ++KGKFLLAARR+R GAH+EYIIS D  DL  GSN+YVGKL SDFLGT F IYDS+PP++G KP  S+ SRR
Sbjct:   55 LLPELLTEIMRRVDAGAERWPPRRDVVACACVCRRWRDAAVSVVRPPLECGRITFPSSLKQPGPRDAPMHCFIRRNKKNSTFYLYLSLTQALTDKGKFLLAARRFRNGAHTEYIISYDCDDLFPGSNSYVGKLRSDFLGTKFIIYDSQPPYDGAKPSRSQSSRR 218          
BLAST of FC930395 vs. ExPASy Swiss-Prot
Match: TLP10_ORYSJ (Tubby-like F-box protein 10 OS=Oryza sativa subsp. japonica GN=TULP10 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.952e-55
Identity = 102/165 (61.82%), Postives = 130/165 (78.79%), Query Frame = 1
Query:  214 LLPELLGEIIRRVETTE-DSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGCKPLSSRGSRR 705
            LLPEL+ E++RRVE +  + WP R+++V+CACVC+RWRE    +V+    SG+ITFPS LKQPGP++FP QC ++RNKK S FYLYL L     +KGKFL+AARR+RRG H+EY+ISLDA DLSQGSNAYVGKL SDF GTNF IYD++PP++  K  S+R S+R
Sbjct:   27 LLPELVEEVVRRVEASGGERWPARKDLVSCACVCRRWREAAAAVVRPLPESGRITFPSSLKQPGPKDFPIQCFVKRNKKKSMFYLYLGLLNGTMDKGKFLMAARRFRRGPHTEYVISLDADDLSQGSNAYVGKLRSDFWGTNFKIYDNQPPYDDAKTSSTRSSQR 191          
BLAST of FC930395 vs. ExPASy Swiss-Prot
Match: TLP6_ORYSJ (Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.770e-48
Identity = 90/163 (55.21%), Postives = 122/163 (74.85%), Query Frame = 1
Query:  214 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGCKPLSSRGSR 702
            L PELL E++ R+E +E  WP R++VVACA VC+ WR ITK+IV+ P  SGK+TFP  LKQPGPR+   +C IRRN+ T T+YLY+ LT + ++ GKFLLAAR+ R+   ++Y+ISLD  D+S+GSN Y+GKL S+FLGT FT+YD+ PP++G     SR +R
Sbjct:   55 LPPELLREVLVRIEESEVWWPSRRDVVACAGVCRSWRGITKEIVRVPEASGKLTFPISLKQPGPRDGTLKCFIRRNRTTQTYYLYIGLTEALADDGKFLLAARKCRKPTCTDYLISLDMSDMSKGSNTYIGKLRSNFLGTKFTVYDAHPPYDGAVVSKSRSAR 217          
BLAST of FC930395 vs. ExPASy Swiss-Prot
Match: TLP2_ORYSJ (Tubby-like F-box protein 2 OS=Oryza sativa subsp. japonica GN=TULP2 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.150e-48
Identity = 91/163 (55.83%), Postives = 116/163 (71.17%), Query Frame = 1
Query:  214 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGCKPLSSRGSR 702
            L+P+LL +I+R VE   + WP R++VVACA VC+RWR++   +V+ P  SGKITFPS LKQPGPR+ P QC I+RNKK STF+LYL LT   ++  KFLLAARR RRG H EY I++++  L  GS + VG L S+F GT FTI D +PP+ G K  SSR  R
Sbjct:   54 LVPDLLADILRCVEAGSERWPPRRDVVACASVCRRWRDVAVAVVQPPLESGKITFPSSLKQPGPRDAPMQCFIKRNKKNSTFFLYLGLTQELTDDEKFLLAARRCRRGLHKEYAITINSDGLFHGSQSCVGNLKSNFTGTKFTIRDWQPPYEGAKAFSSRSGR 216          
BLAST of FC930395 vs. ExPASy Swiss-Prot
Match: TLP12_ORYSJ (Tubby-like F-box protein 12 OS=Oryza sativa subsp. japonica GN=TULP12 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.150e-48
Identity = 93/166 (56.02%), Postives = 125/166 (75.30%), Query Frame = 1
Query:  214 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPS-FSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGCKPLS-SRGSRR 705
            L PELL ++++R+E  E +WP R++VVACA VC+ WREI KDIV+SP + GK+TFP  LKQPGPR+   QC I+R+K   T+YLYL L+P+  SE GKFLLAA+R RR   +EYIIS+D+ ++S+ SN YVGK+ S+FLGT F +YD++PP+N    +S   GSRR
Sbjct:   62 LPPELLRDVMKRLEEGESNWPSRKDVVACAAVCRTWREICKDIVQSPEICGKLTFPVSLKQPGPRDGLIQCFIKRDKSKLTYYLYLCLSPAVLSENGKFLLAAKRNRRATSTEYIISVDSKNISRSSNGYVGKMRSNFLGTKFVVYDTQPPYNAGSLMSCQHGSRR 227          
BLAST of FC930395 vs. ExPASy Swiss-Prot
Match: TLP3_ARATH (Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.268e-46
Identity = 89/162 (54.94%), Postives = 120/162 (74.07%), Query Frame = 1
Query:  220 PELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFS-EKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGCKPLSSRGSR 702
            PELL +++ R+E +ED+WP R+NVV+CA VC+ WREI K+IV+ P LS K+TFP  LKQPGPR    QC I RN+   T+YLYL L  + S + GKFLLAA+R+RR   ++YIISL+  D+S+GSN Y+GKL S+FLGT FT+YD++P + G +   +R SR
Sbjct:   57 PELLRDVLMRIEQSEDTWPSRKNVVSCAGVCRNWREIVKEIVRVPELSSKLTFPISLKQPGPRGSLVQCYIMRNRSNQTYYLYLGLNQAASNDDGKFLLAAKRFRRPTCTDYIISLNCDDVSRGSNTYIGKLRSNFLGTKFTVYDAQPTNPGTQVTRTRSSR 218          
BLAST of FC930395 vs. ExPASy Swiss-Prot
Match: TLP11_ORYSJ (Tubby-like F-box protein 11 OS=Oryza sativa subsp. japonica GN=TULP11 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.820e-46
Identity = 86/153 (56.21%), Postives = 116/153 (75.82%), Query Frame = 1
Query:  214 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNG 672
            L PELL E++ RVE +E  WP R++VVACA VC+ WR I ++IV++P  SG +TFP  LKQPGPR+ P +C I RN+ T T+YLY+ LT + ++ GKFLLAAR+ RR   +EY+ISLD  D+S+ +++YVGKL S+FLGT FTIYD+ PP+ G
Sbjct:   58 LPPELLREVLARVEESEGWWPRRRDVVACAGVCRSWRGIVREIVRTPEASGNLTFPISLKQPGPRDAPMKCFIVRNRTTQTYYLYIGLTDALTDDGKFLLAARKCRRTTCTEYLISLDMNDISKRTDSYVGKLRSNFLGTKFTIYDAHPPYAG 210          
BLAST of FC930395 vs. ExPASy Swiss-Prot
Match: TLP8_ORYSJ (Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.832e-45
Identity = 89/166 (53.61%), Postives = 123/166 (74.10%), Query Frame = 1
Query:  214 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLAL-TPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGCK-PLSSRGSRR 705
            L PELL ++IRR+E +E +WP R++VV+CA VCK WRE+ K+IV SP   GK+TFP  LKQPGPR+   QC I+R+K  ST++LYL L T   ++ GKFLL+A+R+R+   +EY+IS+DA ++S+ S+ Y+GKL S+FLGT F IYD++P +NG   P   R SRR
Sbjct:   62 LPPELLRDVIRRLEASESTWPSRKDVVSCAAVCKAWREMCKEIVLSPEFCGKLTFPLSLKQPGPRDGMIQCFIKRDKSKSTYHLYLCLSTAVLADSGKFLLSAKRHRKTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPSYNGAVIPPVGRSSRR 227          
The following BLAST results are available for this feature:
BLAST of FC930395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
TLP7_ARATH9.320e-7463.00Tubby-like F-box protein 7 OS=Arabidopsis thaliana... [more]
TLP1_ORYSJ1.396e-6167.88Tubby-like F-box protein 1 OS=Oryza sativa subsp. ... [more]
TLP9_ORYSJ3.801e-5965.24Tubby-like F-box protein 9 OS=Oryza sativa subsp. ... [more]
TLP10_ORYSJ1.952e-5561.82Tubby-like F-box protein 10 OS=Oryza sativa subsp.... [more]
TLP6_ORYSJ1.770e-4855.21Tubby-like F-box protein 6 OS=Oryza sativa subsp. ... [more]
TLP2_ORYSJ5.150e-4855.83Tubby-like F-box protein 2 OS=Oryza sativa subsp. ... [more]
TLP12_ORYSJ5.150e-4856.02Tubby-like F-box protein 12 OS=Oryza sativa subsp.... [more]
TLP3_ARATH1.268e-4654.94Tubby-like F-box protein 3 OS=Arabidopsis thaliana... [more]
TLP11_ORYSJ4.820e-4656.21Tubby-like F-box protein 11 OS=Oryza sativa subsp.... [more]
TLP8_ORYSJ1.832e-4553.61Tubby-like F-box protein 8 OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionC34007B02EF PostHarvC1 Citrus clementina cDNA clone C34007B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930395 ID=FC930395; Name=FC930395; organism=Citrus clementina; type=EST; length=707bp
GAAAGCAAAATCAAAAGAAGAAGCGGGTGGGCGAAAATGTCTCTGAGAAA
TTCGTGTCTCTCTCGAAGGATCTCGAGATCGTTCGGAGAGGCACACAAAT
CTTCGAAAGAGACCGAACTCAATGCCGCTGACGACTCGGTCGTGTCGTCG
ACCACGTCGGCGCCGATGGATTCCGGCGCCGCCGCTGCCCACTCCTCCGG
GTCATGGGCCGGGTTGCTGCCCGAATTGCTAGGGGAGATCATAAGGCGCG
TGGAGACCACAGAAGATAGCTGGCCCCATCGCCAAAACGTTGTCGCTTGT
GCTTGCGTTTGTAAGAGATGGAGGGAAATTACCAAAGATATCGTCAAGTC
TCCTTTTCTTAGTGGCAAAATTACCTTCCCTTCTTGCCTTAAACAGCCGG
GTCCACGCGAGTTCCCTCATCAATGTCTAATAAGGCGGAATAAGAAGACC
TCAACGTTCTACCTCTATCTTGCACTTACCCCATCATTTAGCGAAAAGGG
GAAGTTTCTTTTAGCAGCTCGGAGATATAGACGTGGTGCACACAGTGAGT
ATATCATATCTCTTGATGCTGGTGATCTTTCTCAAGGGAGTAATGCATAT
GTTGGCAAATTAAGTTCTGATTTCCTTGGGACAAACTTTACAATTTACGA
CAGCCGGCCGCCTCACAATGGGTGCAAACCCCTCAGCAGCAGGGGTAGTC
GACGATT
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