FC930396

Overview
NameFC930396
Unique NameFC930396
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930396_ssr159 microsatellite FC930396_ssr159:159..170. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930396_ssr32 microsatellite FC930396_ssr32:32..51. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930396_ssr167 microsatellite FC930396_ssr167:167..178. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9391 contig Ccv1_Contig9391:1..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930396 vs. ExPASy Swiss-Prot
Match: GEML5_ARATH (GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.121e-82
Identity = 141/190 (74.21%), Postives = 166/190 (87.37%), Query Frame = 1
Query:  151 PPSEEEERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQSYVEYSPIDKPS-NNPLEPVIHAFNTWSTKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKGMIPLANISSVN 717
            P S   ++KKWGTH+MGAPA P AHPDNQ+AA+W A + QQ  +Q YV YSP++ P+ NNPLEPVI  F+TWS KAET+ARN+WHNLKTGPS+SE AWGKVNLTAKAIT+GGFESLF+QIF T+PNE LKKTFACYLSTTTGPVAGT+YLS ARVAFCSDRPL FTAPSGQE+WSYY+ ++PLAN+++VN
Sbjct:   29 PSSSSPDQKKWGTHVMGAPAAPVAHPDNQQAAAWVAGDNQQTQYQPYVIYSPVEHPTTNNPLEPVIGMFHTWSRKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVVPLANVATVN 218          
BLAST of FC930396 vs. ExPASy Swiss-Prot
Match: GEM_ARATH (GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.836e-31
Identity = 79/205 (38.54%), Postives = 112/205 (54.63%), Query Frame = 1
Query:  133 STLTEAPPSEEEERKK---WGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQSYVEYSPIDKPSNNPLEPVIHAFNTW-------STKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKGMIPLANISSVN 717
            ST  +AP       KK   W   ++      S  PD QKAAS ++        +S  E S  D    + +E V      W       + K E++A N W +L+T PS ++AA G++  + K   EGG+E +F+Q F TDP E+L  +FACYLST+ GPV G LY+S+A++A+CSD PL +     Q  WSYYK +IPL  + +VN
Sbjct:   53 STPVKAPSRTSSGSKKSVHWSPELVSG----SQEPD-QKAASSSSAGSNPYIARSPAETS--DASLKDTMETVKGVLGRWGKRVAEAAKKTESLAGNTWQHLRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKLAYCSDNPLSY-KNGDQTEWSYYKVVIPLHQLKAVN 249          
BLAST of FC930396 vs. ExPASy Swiss-Prot
Match: GEML1_ARATH (GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.076e-28
Identity = 72/178 (40.45%), Postives = 98/178 (55.06%), Query Frame = 1
Query:  205 PAVPSAHPDNQKAASWNAENRQQIYHQSYVEYSPIDKPSNNPLEPVIHAFNTW-------STKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKGMIPLANISSVN 717
            P  P   P    A +  AE+        YV  SP  +   N ++ V      W       + KAE +A N W +LKTGPSV++AA  ++    K + EGG+E +FKQ F   P+EKL KT+ACYLST+ GPV G +YLST ++AF SD PL +     Q  WSYYK ++P   + +VN
Sbjct:   45 PPPPQPIPTGAAATTMPAESNP------YVSPSPAPR---NTMDSVKDTLGKWGKMAADATKKAEDLAGNFWQHLKTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKLAFSSDNPLSY-KEGEQTLWSYYKVVLPANQLKAVN 212          
BLAST of FC930396 vs. ExPASy Swiss-Prot
Match: GEML8_ARATH (Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 44/116 (37.93%), Postives = 70/116 (60.34%), Query Frame = 1
Query:  370 KAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKGMIPLANISSVN 717
            K ++    +    K GP ++E    K++L A+ +  GG E ++K++F     EKL K + CYLSTT GP+AG L++S+ ++AFCS+R +   +P G+    +YK  IPL  I+ VN
Sbjct:   56 KNDSFTNGVRDQDKLGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGELNRVHYKVSIPLCKINGVN 171          
BLAST of FC930396 vs. ExPASy Swiss-Prot
Match: GEML6_ARATH (GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.693e-19
Identity = 44/103 (42.72%), Postives = 66/103 (64.08%), Query Frame = 1
Query:  409 KTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKGMIPLANISSVN 717
            K GP ++E    K++L AK +  GG E ++K++F     EKL K + CYLSTT GP+AG L++S+ ++AFCS+R +   +P G  +  +YK  IPL  I+ VN
Sbjct:   69 KLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDQEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGVLSRVHYKVSIPLCKINGVN 171          
BLAST of FC930396 vs. ExPASy Swiss-Prot
Match: GEML7_ARATH (GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 44/103 (42.72%), Postives = 65/103 (63.11%), Query Frame = 1
Query:  409 KTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKGMIPLANISSVN 717
            K GP ++E    K++L AK +  GG E ++K++F     EKL K + CYLSTT G +AG L++S+ ++AFCS+R +  T+P G     +YK  IPL  I+ VN
Sbjct:   61 KLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAYQCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLTRVHYKVSIPLCKINGVN 163          
BLAST of FC930396 vs. ExPASy Swiss-Prot
Match: GEML3_ARATH (Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 63/193 (32.64%), Postives = 93/193 (48.19%), Query Frame = 1
Query:  163 EEERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQSYVEYSPIDKPSNNPLEPVIHAFNTW-------STKAETIARNIW-HNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKGMIPLANISSVN 717
            + E   W   ++      S  PD +  +S +A        ++  E S  D      +E V      W       + KAE++A N W H L+       AA G++  + K + EGG+E +F+Q F T P E+L+ +FACYLST+ GPV G LY+STA++A+CSD  L                +IPL  + SVN
Sbjct:   24 DRENLHWNPELVSE----SPAPDEKALSSSSAARSNPYVARAPTETS--DASLKETMESVKGVLGRWGRRVGEAAMKAESLAGNTWQHPLR-------AAMGRIAQSTKVLAEGGYEKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYVSTAKLAYCSDTSLV---------------VIPLHQLKSVN 188          
BLAST of FC930396 vs. ExPASy Swiss-Prot
Match: GEML4_ARATH (GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18
Identity = 44/116 (37.93%), Postives = 66/116 (56.90%), Query Frame = 1
Query:  370 KAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKGMIPLANISSVN 717
            K +     +    K  P ++E    K++L A+ +  GG E +FK++F     EKL K + CYLSTT GP+AG L++S+ ++AFCS+R +   +P G     +YK  IPL  I  VN
Sbjct:   55 KTDGFTNGVRDQSKIRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLLFISSKKMAFCSERSIKVDSPQGDIIRVHYKVSIPLCKIDRVN 170          
BLAST of FC930396 vs. ExPASy Swiss-Prot
Match: GEML2_ARATH (GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.673e-17
Identity = 46/117 (39.32%), Postives = 71/117 (60.68%), Query Frame = 1
Query:  370 KAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCF-TAPSGQEAWSYYKGMIPLANISSVN 717
            KAE +   +  +LK  PS+S+AA  +++   K I EGG E +F++ F     EKL  +F CY+STT+GPV G +Y+S  R+AFCSD  +   ++  G    +YYK ++    ISS++
Sbjct:   66 KAEALVGGLKDHLKFSPSISDAAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRIAFCSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSIS 182          
The following BLAST results are available for this feature:
BLAST of FC930396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GEML5_ARATH1.121e-8274.21GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g... [more]
GEM_ARATH5.836e-3138.54GLABRA2 expression modulator OS=Arabidopsis thalia... [more]
GEML1_ARATH2.076e-2840.45GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1... [more]
GEML8_ARATH3.924e-1937.93Putative GEM-like protein 8 OS=Arabidopsis thalian... [more]
GEML6_ARATH6.693e-1942.72GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g... [more]
GEML7_ARATH1.491e-1842.72GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g... [more]
GEML3_ARATH1.491e-1832.64Putative GEM-like protein 3 OS=Arabidopsis thalian... [more]
GEML4_ARATH7.400e-1837.93GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g... [more]
GEML2_ARATH3.673e-1739.32GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g... [more]
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Properties
Property NameValue
Genbank descriptionC34007B03EF PostHarvC1 Citrus clementina cDNA clone C34007B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930396 ID=FC930396; Name=FC930396; organism=Citrus clementina; type=EST; length=717bp
GGTGACCGTGAATAACAATAAATCCATCAGAATTTATTTATTTATTTATT
TTTGTTCTCATAGCAATAGCCTCAACCTTCCAGTCAATCGACAACCAGCA
TCACCATGACAAGCACACCAGAAAAATTGTCAAGCACTCTGACAGAAGCT
CCACCTTCAGAAGAAGAAGAAAGAAAGAAATGGGGTACCCATATCATGGG
AGCGCCAGCGGTGCCTAGTGCTCACCCAGACAATCAAAAGGCAGCCTCAT
GGAACGCCGAAAACCGCCAGCAAATCTATCATCAGTCTTATGTCGAGTAC
TCTCCTATCGACAAGCCAAGTAACAACCCTTTGGAGCCTGTAATTCACGC
GTTCAATACTTGGAGCACCAAAGCTGAGACCATTGCCCGCAACATCTGGC
ATAATCTGAAAACCGGTCCCTCTGTGTCGGAAGCTGCATGGGGGAAGGTG
AATTTGACAGCGAAAGCAATAACAGAGGGCGGATTTGAGTCTCTCTTCAA
GCAGATTTTTGCAACTGATCCGAATGAGAAGCTAAAGAAGACCTTTGCGT
GTTATCTTTCTACAACAACTGGTCCTGTTGCTGGAACACTCTATTTATCA
ACGGCCCGTGTGGCTTTTTGCAGTGATCGTCCCTTGTGTTTTACTGCTCC
ATCTGGGCAGGAAGCTTGGAGCTACTACAAGGGTATGATACCTTTGGCGA
ATATAAGCTCAGTCAAT
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