FC930453

Overview
NameFC930453
Unique NameFC930453
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: HS101_ARATH (Heat shock protein 101 OS=Arabidopsis thaliana GN=HSP101 PE=2 SV=2)

HSP 1 Score: 318.161 bits (814), Expect = 2.816e-86
Identity = 162/194 (83.51%), Postives = 177/194 (91.24%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQAGKLDPVIGRDEENRKGVRI 710
            MNP+KFTHKTNE IA AHELA +AGHAQFTPLHLA AL+SDP+GIF QAI++AGGENAAQSAE V NQA+KKLPSQ+P PD+IPAS++LIKVIRRAQAAQK+ GDTHLAVDQLI+GLLEDSQI DL  E GVA ARVKSEVEKLRGKEG+KVESASGDT FQALKTYGRDLVEQAGKLDPVIGRDEE R+ VRI
Sbjct:    1 MNPEKFTHKTNETIATAHELAVNAGHAQFTPLHLAGALISDPTGIFPQAISSAGGENAAQSAERVINQALKKLPSQSPPPDDIPASSSLIKVIRRAQAAQKSRGDTHLAVDQLIMGLLEDSQIRDLLNEVGVATARVKSEVEKLRGKEGKKVESASGDTNFQALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRI 194          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: HS101_ORYSJ (Heat shock protein 101 OS=Oryza sativa subsp. japonica GN=HSP101 PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.772e-72
Identity = 141/196 (71.94%), Postives = 159/196 (81.12%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAA--QSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQAGKLDPVIGRDEENRKGVRI 710
            MNPD FTHKTNEA+  AHE+A+ AGHAQ TPLHL  AL +D  GI  QAI+ A G +A    S E V + A+KKLPSQ+P PD +PAST LIKVIRRAQ+AQK  GD+HLAVDQL+LGLLEDS I D  KEAGV+ ARV++E+EKLRG EGRKVESASGDT FQALKTYGRDLVEQAGKLDPVIGRDEE R+ VRI
Sbjct:    1 MNPDNFTHKTNEALVAAHEIASEAGHAQLTPLHLVAALAADKGGILRQAISQASGGDAGAPDSFERVVSGALKKLPSQSPPPDSVPASTALIKVIRRAQSAQKKRGDSHLAVDQLLLGLLEDSLISDCLKEAGVSAARVRAELEKLRGGEGRKVESASGDTNFQALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRI 196          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_RICBR (Chaperone protein clpB OS=Rickettsia bellii (strain RML369-C) GN=clpB PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.621e-25
Identity = 69/197 (35.03%), Postives = 112/197 (56.85%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQI-GDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVE--QAGKLDPVIGRDEENRKGVRI 710
            MN DKFT     AI     +A    H Q  PLHL  +L ++ +GI    INN+GG N    A+ V  +  K    Q      I +S  L+KV++RA    K +GD+ + +++++  L  D+ I G +    G++  ++ + + +LR  +G+K ++ S + ++ ALK YGRD+ E  ++GKLDP+IGRDEE R+ V++
Sbjct:    1 MNIDKFTAHAKSAITNCQHIAAKNDHQQILPLHLLASLFNEDTGIIRTLINNSGG-NLNILADQVQVELNKIPKVQVDGGGTIYSSAELLKVLQRADDLAKNNGDSFVTIERILEALSFDNTIAGKILTNNGISSKKLAASILQLR--KGKKADTESAENSYDALKKYGRDVTELAESGKLDPIIGRDEEIRRTVQV 194          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: HS104_SCHPO (Heat shock protein 104 OS=Schizosaccharomyces pombe GN=hsp104 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.053e-24
Identity = 66/195 (33.85%), Postives = 106/195 (54.36%), Query Frame = 3
Query:  144 FTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSG----IFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            FT K  + ++ A+ +A S GH+Q TP+H+A ALLSD       +    ++ AGG+   Q  E      + +LP+Q P P+++  S    K++R A   QK   D+++A D  I    +D  +  L  EAGV     +  V  +RG   ++++S + +  F AL  +  DL E A  G+LDPVIGR++E R+ +R+
Sbjct:    6 FTDKAAKTLSDAYSIAQSYGHSQLTPIHIAAALLSDSDSNGTTLLRTIVDKAGGDG--QKFERSVTSRLVRLPAQDPPPEQVTLSPESAKLLRNAHELQKTQKDSYIAQDHFIAVFTKDDTLKSLLAEAGVTPKAFEFAVNNVRG--NKRIDSKNAEEGFDALNKFTVDLTELARNGQLDPVIGREDEIRRTIRV 196          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_BRUSU (Chaperone protein clpB OS=Brucella suis GN=clpB PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.797e-24
Identity = 67/198 (33.84%), Postives = 106/198 (53.54%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLI--LGLLEDSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVE--QAGKLDPVIGRDEENRKGVRI 710
            MN +K+T +    I  A   A S+G+ QFTP H+   L+ D  G+ A  +  AGG             A++KLP  +   D++  S  L KV   A+      GD+ + V++L+  L + + ++  ++   AGV    +   +  +R  +GR  +SAS ++ + ALK Y RDL E  +AGKLDPVIGRDEE R+ +++
Sbjct:    1 MNIEKYTERVRGFIQSAQTFALSSGNQQFTPEHILKVLIDDDEGLAASLVERAGGR--VGDVRMGLQSALEKLPKVSGGNDQLYLSQPLAKVFSLAEELASKAGDSFVTVERLLTALAMEKSAKTSEILSAAGVTPTALNRVINDMR--KGRTADSASAESNYDALKKYARDLTEDARAGKLDPVIGRDEEIRRTIQV 194          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_BRUME (Chaperone protein clpB OS=Brucella melitensis GN=clpB PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.797e-24
Identity = 67/198 (33.84%), Postives = 106/198 (53.54%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLI--LGLLEDSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVE--QAGKLDPVIGRDEENRKGVRI 710
            MN +K+T +    I  A   A S+G+ QFTP H+   L+ D  G+ A  +  AGG             A++KLP  +   D++  S  L KV   A+      GD+ + V++L+  L + + ++  ++   AGV    +   +  +R  +GR  +SAS ++ + ALK Y RDL E  +AGKLDPVIGRDEE R+ +++
Sbjct:    1 MNIEKYTERVRGFIQSAQTFALSSGNQQFTPEHILKVLIDDDEGLAASLVERAGGR--VGDVRMGLQSALEKLPKVSGGNDQLYLSQPLAKVFSLAEELASKAGDSFVTVERLLTALAMEKSAKTSEILSAAGVTPTALNRVINDMR--KGRTADSASAESNYDALKKYARDLTEDARAGKLDPVIGRDEEIRRTIQV 194          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_RICCN (Chaperone protein clpB OS=Rickettsia conorii GN=clpB PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.065e-24
Identity = 66/198 (33.33%), Postives = 110/198 (55.56%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPS-QTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQI-GDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVE--QAGKLDPVIGRDEENRKGVRI 710
            MN DKFT      IA +  LA    H Q  PLHL  +LLS+ +GI    INN GG       +      + K+P  Q     ++ +S   +KV+ +A +  K +GD+ + ++++   L  D+ I G +    G+   ++ + +  L+ ++G+K ++ S + ++ ALK YGRD+ E  ++GKLDP+IGRDEE R+ V++
Sbjct:    1 MNIDKFTAHAKSVIASSQLLAAKNDHQQILPLHLLSSLLSEETGIIQTLINNTGGN--INLLKDQVQLELNKIPKVQVEGGGQVYSSAEALKVLEKASSIAKDNGDSFVTIERIFEALTYDNTIAGKILTNNGINNKKIATAI--LQFRKGKKADTESAENSYDALKKYGRDVTELAESGKLDPIIGRDEEIRRTVQV 194          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_RHIME (Chaperone protein clpB OS=Rhizobium meliloti GN=clpB PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.003e-24
Identity = 69/198 (34.85%), Postives = 107/198 (54.04%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQ--IGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M+ +K++ +    +  A   A + GH QFTP H+   LL D  G+ A  I  AGG   A+ A+     A+ KLP  T     +  S  L KV   A+ A K  GD+ + V++L+L L  +S      +  +AGV   ++   + ++R  +GR  +SA+ +  F +LK Y RDL  +A  GKLDPVIGRD+E R+ +++
Sbjct:    1 MDIEKYSERVRGFLQSAQTYALAEGHQQFTPEHVLKVLLDDDQGMAASLIERAGGN--AREAKVGTAAALAKLPKVTGGNGSVYLSQPLAKVFTAAEDAAKKAGDSFVTVERLLLALAIESSAATASILSKAGVTPTKLNQVINEIR--KGRTADSANAEQGFDSLKKYARDLTAEAREGKLDPVIGRDDEIRRTIQV 194          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_RHOPA (Chaperone protein clpB OS=Rhodopseudomonas palustris GN=clpB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.228e-24
Identity = 68/199 (34.17%), Postives = 107/199 (53.77%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQT-PAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLL--EDSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            MN +K+T +    I  A  LA   GH QF+PLH+   LL D  G+    I+ AGG + A        +A+ K+P  +     ++  +    +    A+ A +  GD+ + V++L+L L   +DS+ G L  + GV    + + +  LR  +GR  +SA+ +  + ALK Y RDL + A  GKLDPVIGRDEE R+ +++
Sbjct:    1 MNVEKYTERVRGFIQSAQSLAMREGHQQFSPLHILKVLLDDSEGLAGGLIDRAGGNSRA--ILKATEEALGKMPKVSGSGAGQVYLAPATARAFDAAEKAAEKAGDSFVTVERLLLALSLDKDSEAGQLLTKGGVTPQNLNAAINALR--KGRTADSATAENAYDALKKYARDLTQAARDGKLDPVIGRDEEIRRTIQV 195          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_BRAJA (Chaperone protein clpB OS=Bradyrhizobium japonicum GN=clpB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.228e-24
Identity = 70/199 (35.18%), Postives = 109/199 (54.77%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQT-PAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLL--EDSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            MN +K+T ++   I  A  LA   GH QF+ LH+   LL D  G+ A  I+ AGG + A         A+ K+P  +     +I  +  L +    A+ A +  GD+ + V++L+LGL   + S+ G +  + GV    + + +E LR  +GR  +SA+ +  + ALK Y RDL + A  GKLDPVIGRDEE R+ +++
Sbjct:    1 MNIEKYTERSRGFIQSAQSLAVREGHQQFSTLHVLKVLLDDNEGLAAGLIDRAGGNSRA--ILKATEDALNKVPKVSGGGAGQIYLAPELARTFDAAEKAGEKAGDSFVTVERLLLGLTLEKTSEAGTILSKGGVTPQNLNAAIEALR--KGRTADSATAENAYDALKKYARDLTQAARDGKLDPVIGRDEEIRRTIQV 195          
The following BLAST results are available for this feature:
BLAST of FC930453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
HS101_ARATH2.816e-8683.51Heat shock protein 101 OS=Arabidopsis thaliana GN=... [more]
HS101_ORYSJ1.772e-7271.94Heat shock protein 101 OS=Oryza sativa subsp. japo... [more]
CLPB_RICBR3.621e-2535.03Chaperone protein clpB OS=Rickettsia bellii (strai... [more]
HS104_SCHPO1.053e-2433.85Heat shock protein 104 OS=Schizosaccharomyces pomb... [more]
CLPB_BRUSU1.797e-2433.84Chaperone protein clpB OS=Brucella suis GN=clpB PE... [more]
CLPB_BRUME1.797e-2433.84Chaperone protein clpB OS=Brucella melitensis GN=c... [more]
CLPB_RICCN3.065e-2433.33Chaperone protein clpB OS=Rickettsia conorii GN=cl... [more]
CLPB_RHIME4.003e-2434.85Chaperone protein clpB OS=Rhizobium meliloti GN=cl... [more]
CLPB_RHOPA5.228e-2434.17Chaperone protein clpB OS=Rhodopseudomonas palustr... [more]
CLPB_BRAJA5.228e-2435.18Chaperone protein clpB OS=Bradyrhizobium japonicum... [more]

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Properties
Property NameValue
Genbank descriptionC34007G02EF PostHarvC1 Citrus clementina cDNA clone C34007G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930453 ID=FC930453; Name=FC930453; organism=Citrus clementina; type=EST; length=712bp
GAGACGAAGAGAAACCAAACACGCAGACGATCGAAGCATACACAAAAGCC
TTAAGAAAAGAGCTATTCATTTCTTCAACCTCCCATCGAGGAAAGTTTCG
TAAGGATTGTATACGCTAAAGAGTACAGATGAATCCTGACAAATTCACCC
ACAAGACCAATGAGGCCATTGCCATGGCTCATGAACTGGCAACAAGCGCT
GGTCATGCGCAATTCACTCCTCTGCATCTTGCAGTTGCGCTGCTATCTGA
CCCCAGTGGCATCTTTGCTCAGGCAATCAACAATGCTGGTGGCGAAAATG
CTGCGCAGTCAGCAGAACCAGTGTTCAATCAAGCTATGAAGAAACTCCCA
TCTCAAACTCCAGCCCCCGATGAAATTCCAGCTAGTACCACACTCATCAA
AGTAATTAGACGTGCCCAAGCCGCTCAAAAAGCGCATGGAGACACCCATT
TAGCTGTTGACCAGTTAATTCTAGGACTTCTTGAGGATTCCCAGATTGGG
GATTTGTTCAAGGAAGCTGGAGTTGCCGTAGCAAGAGTGAAATCCGAGGT
GGAAAAGCTTCGTGGGAAGGAAGGGAGGAAGGTGGAGAGTGCTTCAGGGG
ATACTACTTTCCAAGCTCTCAAGACGTATGGGAGAGACCTTGTCGAACAG
GCAGGAAAGCTTGATCCTGTCATTGGCCGAGATGAAGAAAATAGAAAGGG
TGTTCGAATTCT
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