FC930474

Overview
NameFC930474
Unique NameFC930474
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930474 vs. ExPASy Swiss-Prot
Match: EXOS5_HUMAN (Exosome complex exonuclease RRP46 OS=Homo sapiens GN=EXOSC5 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 45/120 (37.50%), Postives = 71/120 (59.17%), Query Frame = 2
Query:  191 EMEVDRADGRNPN----QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAV 538
            ++  +   G +P      LR  AC  ++L R  GSAS+ QGDT VLA VYGP       E   KA++EVI +P+ G  G  EK  E +++ T +++ + T++P T+ +V++QVV D G++
Sbjct:   10 KIRAENGTGSSPRGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSL 129          
BLAST of FC930474 vs. ExPASy Swiss-Prot
Match: EXOS5_MOUSE (Exosome complex exonuclease RRP46 OS=Mus musculus GN=Exosc5 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.276e-15
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = 2
Query:  233 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAV 538
            LR  AC  ++L R  GSAS+ QGDT VLA VYGP       E   KA++EVI +P+ G  G  EK  E +++ T +++ +  ++P T+ +V++QVV D G++
Sbjct:   28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSL 129          
The following BLAST results are available for this feature:
BLAST of FC930474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
EXOS5_HUMAN8.139e-1637.50Exosome complex exonuclease RRP46 OS=Homo sapiens ... [more]
EXOS5_MOUSE5.276e-1541.18Exosome complex exonuclease RRP46 OS=Mus musculus ... [more]
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Properties
Property NameValue
Genbank descriptionC34007H11EF PostHarvC1 Citrus clementina cDNA clone C34007H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930474 ID=FC930474; Name=FC930474; organism=Citrus clementina; type=EST; length=678bp
GAACCAGAACGCAGTCCCTATCTCCCCTTCCTCTTTCTTGACTTCTTTAT
CGTGAAAGAGAGAACGACACACACCTGCGCCCACGCTGCAGCCGCTGCCG
CCGTCGCTAACTAACGCCGACGCCGACTCCCGAGCCTACGGTCTAGTTTC
TCTAACCCTAAGCTAACAAAACAATCCGAGGATAACAGGAGAAATGGAGG
TCGATAGAGCTGATGGGCGTAACCCTAATCAATTGAGACCACTTGCTTGC
TCTTGCAGCATCCTTCACCGTGCACATGGCTCTGCCAGTTGGTCTCAAGG
AGACACAAAAGTGCTGGCTGCTGTTTACGGACCCAAAGCTGGAACAAAGA
AGAATGAAAATCCTGAGAAGGCTAGCATTGAAGTCATTTGGAAACCTAGA
ACTGGACAGATTGGGAAACCGGAAAAAGAGTACGAGATAATATTGAAGCG
GACTTTGCAGAGCATATGCATTTTGACTATCAATCCAAATACCACAACCT
CAGTTATAATTCAGGTCGTCCATGATGACGGTGCTGTATCCTTGATAATA
AATGCATTTTTGTATAACATTTTTTTTTTTTTGCTTCCACCAATAAAATG
CAATGTGAATTGACTATGTATCCTATGGAAATGACTTTACTTCTTTGGTT
TTACTTTGACCCGCAATGGTTGTTTCTT
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