FC930481

Overview
NameFC930481
Unique NameFC930481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length760
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930481_ssr122 microsatellite FC930481_ssr122:122..139. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6813 contig Ccv1_Contig6813:4..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC930481 vs. ExPASy Swiss-Prot
Match: Y1601_ANASP (Uncharacterized protein all1601 OS=Anabaena sp. (strain PCC 7120) GN=all1601 PE=4 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 2.437e-46
Identity = 90/166 (54.22%), Postives = 120/166 (72.29%), Query Frame = 3 
Query:  201 KRSKPIPSGGTYPAKDHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLETVVHGRGRRKDSLDDTYLGVHEELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSYPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGCG 698
            +++K +      PAK+ CS CGLCDTYYI +VK+ACAF+     +I+ LE   H R R  D+ D+ Y GVH++++ A+K +P+ GAQWTGIV++IAIEML  G+VE VVCVQ+  +DR  P PV+ARTPEE+LAA+  KPTLSPNL+ L  VE +G+KRLL  G G
Sbjct:    8 QKAKALKPNSRRPAKELCSECGLCDTYYIHYVKEACAFI---TQQIDTLEEQAHQRSRNLDNPDELYFGVHQDMIAAKKQQPIAGAQWTGIVSSIAIEMLNHGLVEGVVCVQNSKEDRFQPMPVIARTPEEILAARVNKPTLSPNLSILEQVEKSGMKRLLVIGVG 170
The following BLAST results are available for this feature:
BLAST of FC930481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1601_ANASP2.437e-4654.22Uncharacterized protein all1601 OS=Anabaena sp. (s... [more]
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Properties
Property NameValue
Genbank descriptionC34008A06EF PostHarvC1 Citrus clementina cDNA clone C34008A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930481 ID=FC930481; Name=FC930481; organism=Citrus clementina; type=EST; length=760bp
AACTCGGACCTTAGCAGCAAGTAGCTTTCTTTCGCTCTGCGTAATCAAGA
ATCAAGAAGATGACATGTTTCATTGCAAATGCCAAATTCTCTTCGCTTCC
TCTATCAATCTCCACTATTTGTTCTTCTTCTTCTTCTTCCTCCTCTTCAT
CTCCTTCTAAAGATGGAAGCAAGTCAGTGAAGCTGAGAGACGACTGGAGA
AAACGGTCGAAACCCATTCCATCCGGGGGCACCTATCCCGCTAAAGACCA
TTGCAGTCGATGCGGTCTCTGTGATACTTACTACATCGCCCATGTAAAGG
ATGCCTGTGCTTTCCTTGGTGATGGAATGTCCAGAATTGAAGGCTTGGAA
ACTGTGGTTCATGGTAGAGGGAGGAGAAAAGATTCCTTGGATGATACTTA
CTTGGGGGTCCATGAGGAGCTGTTATATGCTCGGAAAACTAAACCAGTAG
AGGGAGCTCAATGGACAGGGATAGTGACAACTATTGCTATTGAGATGCTG
AAAACAGGCATGGTTGAGGCAGTCGTTTGTGTACAGAGCTATCCAGATGA
TAGGCTTAGCCCAAGGCCGGTTTTAGCAAGGACACCAGAGGAAGTTCTGG
CTGCTAAAGGAGTTAAGCCAACATTATCACCTAATCTGAATACCCTCGCC
TTAGTTGAGGCAGCAGGTGTAAAGCGTCTTCTTTTCTGTGGGTGTGGGTT
GCCAAGTGCAAGAGTGATTTCTTAACTGCAGCGTTGAGATCAGTGGAGCA
CATTTGAATT
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