FC930484
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930484 vs. ExPASy Swiss-Prot
Match: PSMD4_ARATH (26S proteasome non-ATPase regulatory subunit 4 OS=Arabidopsis thaliana GN=MBP1 PE=1 SV=1) HSP 1 Score: 197.208 bits (500), Expect = 1.963e-79 Identity = 93/107 (86.92%), Postives = 102/107 (95.33%), Query Frame = 3 Query: 3 CIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAG 323 CIDNSEWMRNGDYSPSRL+AQ +AV+L+CGAKTQSNPENTVGILTM GKGVRVLTTPT+DLGKILACMH LD+GGE+N+ A IQ+AQLALKHRQNKNQRQRIIVFAG Sbjct: 9 CIDNSEWMRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVRVLTTPTSDLGKILACMHGLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAG 115 HSP 2 Score: 120.553 bits (301), Expect = 1.963e-79 Identity = 56/77 (72.73%), Postives = 70/77 (90.91%), Query Frame = 2 Query: 401 SPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDG-KPEKLEALLAAVNNNDSSHLVHVPTGPNALSDVLISSPVLT 628 SP+KY++K +E++GK+LKKNSV++DIVNFGEDDD KP+KLEALL AVNNND SH+VHVP+G NALSDVL+S+PV T Sbjct: 116 SPIKYEKKALEIVGKRLKKNSVSLDIVNFGEDDDEEKPQKLEALLTAVNNNDGSHIVHVPSGANALSDVLLSTPVFT 192
BLAST of FC930484 vs. ExPASy Swiss-Prot
Match: PSMD4_DICDI (26S proteasome non-ATPase regulatory subunit 4 OS=Dictyostelium discoideum GN=psmD4 PE=2 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.643e-47 Identity = 62/107 (57.94%), Postives = 80/107 (74.77%), Query Frame = 3 Query: 3 CIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAG 323 C+DNSEWMRNGD++PSR AQ DAV+LIC +KTQSNPE+ V I++M GK VL T T +L KIL+ EL I G+++ + +Q+AQLAL+HRQN +Q RII F G Sbjct: 9 CLDNSEWMRNGDFTPSRSEAQKDAVNLICASKTQSNPESAVSIMSMAGKKPEVLVTLTQELSKILSGAQELKINGKIDFSTTMQIAQLALRHRQNNHQHPRIIAFVG 115 HSP 2 Score: 80.4925 bits (197), Expect = 1.643e-47 Identity = 38/77 (49.35%), Postives = 56/77 (72.73%), Query Frame = 2 Query: 395 VCSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALSDVLISSPVL 625 V SP+K ++ + + K+LKKN VA+DI+NFGE + +KLEA + VNNND SHL+ VP GP+ LSD+++ SP++ Sbjct: 114 VGSPLKETKEELIQLAKRLKKNGVAVDIINFGEVTENS-DKLEAFINDVNNNDESHLLTVPPGPHILSDIILQSPIV 189
BLAST of FC930484 vs. ExPASy Swiss-Prot
Match: PSMD4_BOVIN (26S proteasome non-ATPase regulatory subunit 4 OS=Bos taurus GN=PSMD4 PE=2 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 2.212e-40 Identity = 58/107 (54.21%), Postives = 79/107 (73.83%), Query Frame = 3 Query: 3 CIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAG 323 C+DNSE+MRNGD+ P+RL+AQ DAV+++C +KT+SNPEN VG++T+ VLTT T D G+IL+ +H + G++ GI+VA LALKHRQ KN + RII F G Sbjct: 9 CVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITL-ANDCEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVG 114 HSP 2 Score: 64.3142 bits (155), Expect = 2.212e-40 Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = 2 Query: 395 VCSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND--SSHLVHVPTGPNALSDVLISSPVL 625 V SPV+ + K + + K+LKK V +DI+NFGE ++ EKL A + +N D SHLV VP GP +L+D LISSP+L Sbjct: 113 VGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISSPIL 189
BLAST of FC930484 vs. ExPASy Swiss-Prot
Match: PSMD4_MOUSE (26S proteasome non-ATPase regulatory subunit 4 OS=Mus musculus GN=Psmd4 PE=1 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 2.212e-40 Identity = 58/107 (54.21%), Postives = 79/107 (73.83%), Query Frame = 3 Query: 3 CIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAG 323 C+DNSE+MRNGD+ P+RL+AQ DAV+++C +KT+SNPEN VG++T+ VLTT T D G+IL+ +H + G++ GI+VA LALKHRQ KN + RII F G Sbjct: 9 CVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITL-ANDCEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVG 114 HSP 2 Score: 64.3142 bits (155), Expect = 2.212e-40 Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = 2 Query: 395 VCSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND--SSHLVHVPTGPNALSDVLISSPVL 625 V SPV+ + K + + K+LKK V +DI+NFGE ++ EKL A + +N D SHLV VP GP +L+D LISSP+L Sbjct: 113 VGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISSPIL 189
BLAST of FC930484 vs. ExPASy Swiss-Prot
Match: PSMD4_HUMAN (26S proteasome non-ATPase regulatory subunit 4 OS=Homo sapiens GN=PSMD4 PE=1 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 2.212e-40 Identity = 58/107 (54.21%), Postives = 79/107 (73.83%), Query Frame = 3 Query: 3 CIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAG 323 C+DNSE+MRNGD+ P+RL+AQ DAV+++C +KT+SNPEN VG++T+ VLTT T D G+IL+ +H + G++ GI+VA LALKHRQ KN + RII F G Sbjct: 9 CVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITL-ANDCEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVG 114 HSP 2 Score: 64.3142 bits (155), Expect = 2.212e-40 Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = 2 Query: 395 VCSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND--SSHLVHVPTGPNALSDVLISSPVL 625 V SPV+ + K + + K+LKK V +DI+NFGE ++ EKL A + +N D SHLV VP GP +L+D LISSP+L Sbjct: 113 VGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISSPIL 189
BLAST of FC930484 vs. ExPASy Swiss-Prot
Match: RPN10_SCHPO (26S proteasome regulatory subunit rpn10 OS=Schizosaccharomyces pombe GN=rpn10 PE=1 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 5.327e-39 Identity = 58/106 (54.72%), Postives = 71/106 (66.98%), Query Frame = 3 Query: 6 IDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAG 323 IDNSEWM NGDY P+R AQ D V +I K NPEN G++T+G +VL+T T D GK L+ MH+L + G GIQ+AQLALKHR+NK QRQRI+ F G Sbjct: 10 IDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVG 115 HSP 2 Score: 60.8474 bits (146), Expect = 5.327e-39 Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 2 Query: 395 VCSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALSDVLISSPV 622 V SP+ D K + + K++KKN+VAIDI++ GE + L+ + A N++DS HLV +P P LSD++ SP+ Sbjct: 114 VGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGELQN--ESALQHFIDAANSSDSCHLVSIPPSPQLLSDLVNQSPI 187
BLAST of FC930484 vs. ExPASy Swiss-Prot
Match: RPN10_YEAST (26S proteasome regulatory subunit RPN10 OS=Saccharomyces cerevisiae GN=RPN10 PE=1 SV=3) HSP 1 Score: 114.775 bits (286), Expect = 1.996e-38 Identity = 56/104 (53.85%), Postives = 74/104 (71.15%), Query Frame = 3 Query: 6 IDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVF 317 IDNSE+ RNGD+ +R AQ D+V I AK SNPENTVG+++ G RVL+T T + GKILA +H+ I G++++A +Q+AQL LKHRQNK Q QRI+ F Sbjct: 10 IDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAF 113 HSP 2 Score: 65.855 bits (159), Expect = 1.996e-38 Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 2 Query: 395 VCSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNN--NDSSHLVHVPTGPNALSDVLISSPVL 625 VCSP+ R + + K LKKN+VA+DI+NFGE + E L+ +AAVNN ++SHL+ V GP L + + SSP++ Sbjct: 114 VCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIEQ-NTELLDEFIAAVNNPQEETSHLLTVTPGPRLLYENIASSPII 191
BLAST of FC930484 vs. ExPASy Swiss-Prot
Match: PIPSL_HUMAN (Putative PIP5K1A and PSMD4-like protein OS=Homo sapiens GN=PIPSL PE=5 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 2.478e-35 Identity = 55/106 (51.89%), Postives = 74/106 (69.81%), Query Frame = 3 Query: 6 IDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAG 323 +DNSE+M NGD+ P+RL+AQ DAV+ +C +KT+SNPEN VG++T+ VLTT T D G+IL+ +H + G++ GI VA LALKHRQ N + RII F G Sbjct: 495 VDNSEYMGNGDFLPTRLQAQQDAVNTVCHSKTRSNPENNVGLITL-DNDCEVLTTLTPDTGRILSKLHTVQPKGKITFCMGIHVAHLALKHRQGNNHKIRIIAFVG 599 HSP 2 Score: 58.9214 bits (141), Expect = 2.478e-35 Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 2 Query: 395 VCSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND--SSHLVHVPTGPNALSDVLISSPVL 625 V +PV+ + K + + K LKK V +DI+NFGE ++ EKL A + +N D SHLV VP GP +L+D LIS P+L Sbjct: 598 VGNPVEDNEKNLVKLAKCLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISFPIL 674
BLAST of FC930484 vs. ExPASy Swiss-Prot
Match: PSMD4_DROME (26S proteasome non-ATPase regulatory subunit 4 OS=Drosophila melanogaster GN=Pros54 PE=1 SV=2) HSP 1 Score: 115.161 bits (287), Expect = 3.260e-35 Identity = 54/107 (50.47%), Postives = 74/107 (69.16%), Query Frame = 3 Query: 3 CIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAG 323 C DNS++ RNGDY P+RL Q D ++L+C K +SNPEN VG++T+ V VL T T+D G+I + MH + GE+N+ GI++A L LKHRQ KN + RI+VF G Sbjct: 9 CFDNSDFQRNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVGLMTLSNT-VEVLATLTSDAGRIFSKMHLVQPKGEINLLTGIRIAHLVLKHRQGKNHKMRIVVFVG 114 HSP 2 Score: 54.6842 bits (130), Expect = 3.260e-35 Identity = 34/79 (43.04%), Postives = 47/79 (59.49%), Query Frame = 2 Query: 395 VCSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND--SSHLVHVPTGPNALSDVLISSPVL 625 V SP+ ++ + K+LKK V +DIV+FG D E L A + A+N D SHLV VP G + LSD L+SSP++ Sbjct: 113 VGSPINHEEGDLVKQAKRLKKEKVNVDIVSFG-DHGNNNEILTAFINALNGKDGTGSHLVSVPRG-SVLSDALLSSPII 189
BLAST of FC930484 vs. ExPASy Swiss-Prot
Match: PSMD4_SCHMA (26S proteasome non-ATPase regulatory subunit 4 OS=Schistosoma mansoni PE=2 SV=2) HSP 1 Score: 103.219 bits (256), Expect = 1.529e-31 Identity = 50/106 (47.17%), Postives = 74/106 (69.81%), Query Frame = 3 Query: 6 IDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAG 323 +DNS++MRNGD+ P+RL+AQ DAV LIC +K Q NPENT+G+L++ VL T T D+ KI +H ++ G + + I++A LAL+HRQ ++Q+ RI+ F G Sbjct: 10 VDNSDYMRNGDFFPTRLQAQNDAVGLICQSKRQRNPENTIGLLSLA--NTEVLCTLTNDVSKIYNRLHLVEPKGRIIFCSSIRIAHLALRHRQLRHQKMRIVCFIG 113 HSP 2 Score: 54.299 bits (129), Expect = 1.529e-31 Identity = 30/77 (38.96%), Postives = 46/77 (59.74%), Query Frame = 2 Query: 401 SPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND--SSHLVHVPTGPNALSDVLISSPVL 625 SP+ D K + + K+LKK V +DI+NFGE++ + +KL + +N D SHL+ V G L D L++SPV+ Sbjct: 114 SPILEDEKELTRLAKRLKKEKVNVDIINFGENETNE-QKLSEFIDTLNGKDGTGSHLISVAPG-TVLHDTLMTSPVV 188 The following BLAST results are available for this feature:
BLAST of FC930484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930484 ID=FC930484; Name=FC930484; organism=Citrus clementina; type=EST; length=706bpback to top |