FC930484

Overview
NameFC930484
Unique NameFC930484
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8445 contig Ccv1_Contig8445:22..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930484 vs. ExPASy Swiss-Prot
Match: PSMD4_ARATH (26S proteasome non-ATPase regulatory subunit 4 OS=Arabidopsis thaliana GN=MBP1 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.963e-79
Identity = 93/107 (86.92%), Postives = 102/107 (95.33%), Query Frame = 3
Query:    3 CIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAG 323
            CIDNSEWMRNGDYSPSRL+AQ +AV+L+CGAKTQSNPENTVGILTM GKGVRVLTTPT+DLGKILACMH LD+GGE+N+ A IQ+AQLALKHRQNKNQRQRIIVFAG
Sbjct:    9 CIDNSEWMRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVRVLTTPTSDLGKILACMHGLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAG 115          

HSP 2 Score: 120.553 bits (301), Expect = 1.963e-79
Identity = 56/77 (72.73%), Postives = 70/77 (90.91%), Query Frame = 2
Query:  401 SPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDG-KPEKLEALLAAVNNNDSSHLVHVPTGPNALSDVLISSPVLT 628
            SP+KY++K +E++GK+LKKNSV++DIVNFGEDDD  KP+KLEALL AVNNND SH+VHVP+G NALSDVL+S+PV T
Sbjct:  116 SPIKYEKKALEIVGKRLKKNSVSLDIVNFGEDDDEEKPQKLEALLTAVNNNDGSHIVHVPSGANALSDVLLSTPVFT 192          
BLAST of FC930484 vs. ExPASy Swiss-Prot
Match: PSMD4_DICDI (26S proteasome non-ATPase regulatory subunit 4 OS=Dictyostelium discoideum GN=psmD4 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.643e-47
Identity = 62/107 (57.94%), Postives = 80/107 (74.77%), Query Frame = 3
Query:    3 CIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAG 323
            C+DNSEWMRNGD++PSR  AQ DAV+LIC +KTQSNPE+ V I++M GK   VL T T +L KIL+   EL I G+++ +  +Q+AQLAL+HRQN +Q  RII F G
Sbjct:    9 CLDNSEWMRNGDFTPSRSEAQKDAVNLICASKTQSNPESAVSIMSMAGKKPEVLVTLTQELSKILSGAQELKINGKIDFSTTMQIAQLALRHRQNNHQHPRIIAFVG 115          

HSP 2 Score: 80.4925 bits (197), Expect = 1.643e-47
Identity = 38/77 (49.35%), Postives = 56/77 (72.73%), Query Frame = 2
Query:  395 VCSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALSDVLISSPVL 625
            V SP+K  ++ +  + K+LKKN VA+DI+NFGE  +   +KLEA +  VNNND SHL+ VP GP+ LSD+++ SP++
Sbjct:  114 VGSPLKETKEELIQLAKRLKKNGVAVDIINFGEVTENS-DKLEAFINDVNNNDESHLLTVPPGPHILSDIILQSPIV 189          
BLAST of FC930484 vs. ExPASy Swiss-Prot
Match: PSMD4_BOVIN (26S proteasome non-ATPase regulatory subunit 4 OS=Bos taurus GN=PSMD4 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.212e-40
Identity = 58/107 (54.21%), Postives = 79/107 (73.83%), Query Frame = 3
Query:    3 CIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAG 323
            C+DNSE+MRNGD+ P+RL+AQ DAV+++C +KT+SNPEN VG++T+      VLTT T D G+IL+ +H +   G++    GI+VA LALKHRQ KN + RII F G
Sbjct:    9 CVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITL-ANDCEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVG 114          

HSP 2 Score: 64.3142 bits (155), Expect = 2.212e-40
Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = 2
Query:  395 VCSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND--SSHLVHVPTGPNALSDVLISSPVL 625
            V SPV+ + K +  + K+LKK  V +DI+NFGE ++   EKL A +  +N  D   SHLV VP GP +L+D LISSP+L
Sbjct:  113 VGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISSPIL 189          
BLAST of FC930484 vs. ExPASy Swiss-Prot
Match: PSMD4_MOUSE (26S proteasome non-ATPase regulatory subunit 4 OS=Mus musculus GN=Psmd4 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.212e-40
Identity = 58/107 (54.21%), Postives = 79/107 (73.83%), Query Frame = 3
Query:    3 CIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAG 323
            C+DNSE+MRNGD+ P+RL+AQ DAV+++C +KT+SNPEN VG++T+      VLTT T D G+IL+ +H +   G++    GI+VA LALKHRQ KN + RII F G
Sbjct:    9 CVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITL-ANDCEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVG 114          

HSP 2 Score: 64.3142 bits (155), Expect = 2.212e-40
Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = 2
Query:  395 VCSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND--SSHLVHVPTGPNALSDVLISSPVL 625
            V SPV+ + K +  + K+LKK  V +DI+NFGE ++   EKL A +  +N  D   SHLV VP GP +L+D LISSP+L
Sbjct:  113 VGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISSPIL 189          
BLAST of FC930484 vs. ExPASy Swiss-Prot
Match: PSMD4_HUMAN (26S proteasome non-ATPase regulatory subunit 4 OS=Homo sapiens GN=PSMD4 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.212e-40
Identity = 58/107 (54.21%), Postives = 79/107 (73.83%), Query Frame = 3
Query:    3 CIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAG 323
            C+DNSE+MRNGD+ P+RL+AQ DAV+++C +KT+SNPEN VG++T+      VLTT T D G+IL+ +H +   G++    GI+VA LALKHRQ KN + RII F G
Sbjct:    9 CVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITL-ANDCEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVG 114          

HSP 2 Score: 64.3142 bits (155), Expect = 2.212e-40
Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = 2
Query:  395 VCSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND--SSHLVHVPTGPNALSDVLISSPVL 625
            V SPV+ + K +  + K+LKK  V +DI+NFGE ++   EKL A +  +N  D   SHLV VP GP +L+D LISSP+L
Sbjct:  113 VGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISSPIL 189          
BLAST of FC930484 vs. ExPASy Swiss-Prot
Match: RPN10_SCHPO (26S proteasome regulatory subunit rpn10 OS=Schizosaccharomyces pombe GN=rpn10 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.327e-39
Identity = 58/106 (54.72%), Postives = 71/106 (66.98%), Query Frame = 3
Query:    6 IDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAG 323
            IDNSEWM NGDY P+R  AQ D V +I   K   NPEN  G++T+G    +VL+T T D GK L+ MH+L + G      GIQ+AQLALKHR+NK QRQRI+ F G
Sbjct:   10 IDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVG 115          

HSP 2 Score: 60.8474 bits (146), Expect = 5.327e-39
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 2
Query:  395 VCSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALSDVLISSPV 622
            V SP+  D K +  + K++KKN+VAIDI++ GE  +     L+  + A N++DS HLV +P  P  LSD++  SP+
Sbjct:  114 VGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGELQN--ESALQHFIDAANSSDSCHLVSIPPSPQLLSDLVNQSPI 187          
BLAST of FC930484 vs. ExPASy Swiss-Prot
Match: RPN10_YEAST (26S proteasome regulatory subunit RPN10 OS=Saccharomyces cerevisiae GN=RPN10 PE=1 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 1.996e-38
Identity = 56/104 (53.85%), Postives = 74/104 (71.15%), Query Frame = 3
Query:    6 IDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVF 317
            IDNSE+ RNGD+  +R  AQ D+V  I  AK  SNPENTVG+++  G   RVL+T T + GKILA +H+  I G++++A  +Q+AQL LKHRQNK Q QRI+ F
Sbjct:   10 IDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAF 113          

HSP 2 Score: 65.855 bits (159), Expect = 1.996e-38
Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 2
Query:  395 VCSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNN--NDSSHLVHVPTGPNALSDVLISSPVL 625
            VCSP+   R  +  + K LKKN+VA+DI+NFGE +    E L+  +AAVNN   ++SHL+ V  GP  L + + SSP++
Sbjct:  114 VCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIEQ-NTELLDEFIAAVNNPQEETSHLLTVTPGPRLLYENIASSPII 191          
BLAST of FC930484 vs. ExPASy Swiss-Prot
Match: PIPSL_HUMAN (Putative PIP5K1A and PSMD4-like protein OS=Homo sapiens GN=PIPSL PE=5 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.478e-35
Identity = 55/106 (51.89%), Postives = 74/106 (69.81%), Query Frame = 3
Query:    6 IDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAG 323
            +DNSE+M NGD+ P+RL+AQ DAV+ +C +KT+SNPEN VG++T+      VLTT T D G+IL+ +H +   G++    GI VA LALKHRQ  N + RII F G
Sbjct:  495 VDNSEYMGNGDFLPTRLQAQQDAVNTVCHSKTRSNPENNVGLITL-DNDCEVLTTLTPDTGRILSKLHTVQPKGKITFCMGIHVAHLALKHRQGNNHKIRIIAFVG 599          

HSP 2 Score: 58.9214 bits (141), Expect = 2.478e-35
Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 2
Query:  395 VCSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND--SSHLVHVPTGPNALSDVLISSPVL 625
            V +PV+ + K +  + K LKK  V +DI+NFGE ++   EKL A +  +N  D   SHLV VP GP +L+D LIS P+L
Sbjct:  598 VGNPVEDNEKNLVKLAKCLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISFPIL 674          
BLAST of FC930484 vs. ExPASy Swiss-Prot
Match: PSMD4_DROME (26S proteasome non-ATPase regulatory subunit 4 OS=Drosophila melanogaster GN=Pros54 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.260e-35
Identity = 54/107 (50.47%), Postives = 74/107 (69.16%), Query Frame = 3
Query:    3 CIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAG 323
            C DNS++ RNGDY P+RL  Q D ++L+C  K +SNPEN VG++T+    V VL T T+D G+I + MH +   GE+N+  GI++A L LKHRQ KN + RI+VF G
Sbjct:    9 CFDNSDFQRNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVGLMTLSNT-VEVLATLTSDAGRIFSKMHLVQPKGEINLLTGIRIAHLVLKHRQGKNHKMRIVVFVG 114          

HSP 2 Score: 54.6842 bits (130), Expect = 3.260e-35
Identity = 34/79 (43.04%), Postives = 47/79 (59.49%), Query Frame = 2
Query:  395 VCSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND--SSHLVHVPTGPNALSDVLISSPVL 625
            V SP+ ++   +    K+LKK  V +DIV+FG D     E L A + A+N  D   SHLV VP G + LSD L+SSP++
Sbjct:  113 VGSPINHEEGDLVKQAKRLKKEKVNVDIVSFG-DHGNNNEILTAFINALNGKDGTGSHLVSVPRG-SVLSDALLSSPII 189          
BLAST of FC930484 vs. ExPASy Swiss-Prot
Match: PSMD4_SCHMA (26S proteasome non-ATPase regulatory subunit 4 OS=Schistosoma mansoni PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.529e-31
Identity = 50/106 (47.17%), Postives = 74/106 (69.81%), Query Frame = 3
Query:    6 IDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAG 323
            +DNS++MRNGD+ P+RL+AQ DAV LIC +K Q NPENT+G+L++      VL T T D+ KI   +H ++  G +   + I++A LAL+HRQ ++Q+ RI+ F G
Sbjct:   10 VDNSDYMRNGDFFPTRLQAQNDAVGLICQSKRQRNPENTIGLLSLA--NTEVLCTLTNDVSKIYNRLHLVEPKGRIIFCSSIRIAHLALRHRQLRHQKMRIVCFIG 113          

HSP 2 Score: 54.299 bits (129), Expect = 1.529e-31
Identity = 30/77 (38.96%), Postives = 46/77 (59.74%), Query Frame = 2
Query:  401 SPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND--SSHLVHVPTGPNALSDVLISSPVL 625
            SP+  D K +  + K+LKK  V +DI+NFGE++  + +KL   +  +N  D   SHL+ V  G   L D L++SPV+
Sbjct:  114 SPILEDEKELTRLAKRLKKEKVNVDIINFGENETNE-QKLSEFIDTLNGKDGTGSHLISVAPG-TVLHDTLMTSPVV 188          
The following BLAST results are available for this feature:
BLAST of FC930484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PSMD4_ARATH1.963e-7986.9226S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_DICDI1.643e-4757.9426S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_BOVIN2.212e-4054.2126S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_MOUSE2.212e-4054.2126S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_HUMAN2.212e-4054.2126S proteasome non-ATPase regulatory subunit 4 OS=... [more]
RPN10_SCHPO5.327e-3954.7226S proteasome regulatory subunit rpn10 OS=Schizos... [more]
RPN10_YEAST1.996e-3853.8526S proteasome regulatory subunit RPN10 OS=Sacchar... [more]
PIPSL_HUMAN2.478e-3551.89Putative PIP5K1A and PSMD4-like protein OS=Homo sa... [more]
PSMD4_DROME3.260e-3550.4726S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_SCHMA1.529e-3147.1726S proteasome non-ATPase regulatory subunit 4 OS=... [more]
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Properties
Property NameValue
Genbank descriptionC34008A09EF PostHarvC1 Citrus clementina cDNA clone C34008A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930484 ID=FC930484; Name=FC930484; organism=Citrus clementina; type=EST; length=706bp
GATGCATTGACAATTCGGAATGGATGCGAAACGGCGATTACTCTCCGTCA
CGATTACGAGCTCAAGCCGACGCCGTTAGTCTTATTTGTGGAGCCAAAAC
ACAATCGAACCCGGAGAATACCGTGGGGATATTGACGATGGGTGGCAAAG
GGGTTCGTGTTTTGACTACTCCTACAACTGATCTTGGGAAAATTTTAGCT
TGCATGCATGAACTTGATATTGGGGGTGAGATGAACATAGCGGCTGGAAT
CCAGGTTGCACAGTTGGCTCTTAAGCATCGGCAGAACAAAAACCAGCGTC
AAAGGATTATAGTTTTTGCTGGAAGGTATGCTTTGCTGGCTCTTTTACTT
GCTTGTTCATGCTTTTTGACATTTGGCTTTCTTTTTTGCCCCGTGTTTGC
AGTCCTGTTAAGTATGATAGGAAGGTAATGGAGATGATTGGGAAGAAATT
GAAGAAGAACAGTGTGGCTATTGATATTGTTAATTTTGGTGAAGATGATG
ATGGGAAGCCAGAGAAATTGGAAGCACTCCTTGCTGCAGTTAATAACAAT
GATAGTAGTCATCTAGTTCATGTTCCTACTGGTCCAAATGCTCTTTCTGA
TGTACTTATAAGCTCACCTGTACTCACTGCTGATGGTGAAGGAGGAAGTG
GCTTTGCTGCAGCAGCAGCGGCAGCTGCAGCTGGTGGAGTTTCTGACTTC
GATTTT
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