FC930485

Overview
NameFC930485
Unique NameFC930485
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6260 contig Ccv1_Contig6260:40..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930485 vs. ExPASy Swiss-Prot
Match: U566_XENLA (UPF0566 protein OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.082e-25
Identity = 67/164 (40.85%), Postives = 95/164 (57.93%), Query Frame = 3
Query:   99 KDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGF--KAQDRCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 581
            + +LLA L +L I     EHP V TVE    +V ++GG  SKNLFLKDKK +  ++VS L D +V++  L+++L LG G LR A E +MLE LKV  G  TP AL  +   DV  +LD  F     +R +FHP++N  ++ +   +   FLK  G DP  +  +
Sbjct:    6 RQELLAYLHELDIRPVCAEHPEVFTVEEMMPHVQHLGGAHSKNLFLKDKKKKGLWLVSVLHDRQVNLNDLAKKLNLGSGNLRFADEASMLEKLKVGQGCATPLALFCDRG-DVQFVLDAQFLEGGYERVYFHPMTNAATLGMTPQEFVTFLKKTGHDPIIIHFD 168          
BLAST of FC930485 vs. ExPASy Swiss-Prot
Match: U566_BOVIN (UPF0566 protein OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.590e-24
Identity = 62/160 (38.75%), Postives = 94/160 (58.75%), Query Frame = 3
Query:  117 RLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGF--KAQDRCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEAN 587
            RL  L I     EHP V TVE    ++ ++ G  SKNLFLKDKK + +++V+ L D ++++  L+++LG+G G LR A E  MLE LKV  G  TP AL  +   DV  +LD  F     ++ +FHP++N  ++ L+  D   F+K+ G DP  ++ + N
Sbjct:   13 RLAALAIRTEVVEHPEVFTVEEMMPHIQHLKGAHSKNLFLKDKKKKGYWLVTVLHDRQINLNDLAKQLGVGSGNLRFADEAAMLEKLKVGQGCATPLALFCDDG-DVKFVLDSAFLEGGHEKVYFHPMTNAATMGLSPEDFLTFVKNTGHDPIILNFDKN 171          
BLAST of FC930485 vs. ExPASy Swiss-Prot
Match: U566_HUMAN (UPF0566 protein OS=Homo sapiens PE=3 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 2.975e-23
Identity = 61/158 (38.61%), Postives = 92/158 (58.23%), Query Frame = 3
Query:  117 RLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGF--KAQDRCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 581
            RL  L I     EHP V TVE    ++ ++ G  SKNLFLKDKK + +++V+ L D ++++  L+++LG+G G LR A E  MLE LKV  G  TP AL  +   DV  +LD  F     ++ +FHP++N  ++ L+  D   F+K  G DP  ++ +
Sbjct:   13 RLGALAIHTEVVEHPEVFTVEEMMPHIQHLKGAHSKNLFLKDKKKKNYWLVTVLHDRQINLNELAKQLGVGSGNLRFADETAMLEKLKVGQGCATPLALFCDGG-DVKFVLDSAFLEGGHEKVYFHPMTNAATMGLSPEDFLTFVKMTGHDPIILNFD 169          
BLAST of FC930485 vs. ExPASy Swiss-Prot
Match: U566_MOUSE (UPF0566 protein OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.657e-23
Identity = 60/162 (37.04%), Postives = 94/162 (58.02%), Query Frame = 3
Query:  105 QLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGF--KAQDRCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 581
            +L  RL  L I     EHP V T+E    ++ ++ G  SKNLFLKDKK + +++V+ L D ++++  L ++LG+G G LR A E  MLE LKV  G  TP +L  +   DV  +LD  F     ++ +FHP++N  ++ L+  D   F+K+ G DP  ++ +
Sbjct:    9 ELEQRLGALAIRTEVVEHPEVFTIEEMMPHIQHLKGAHSKNLFLKDKKKKNYWLVTVLHDRQINLNDLGKQLGVGSGNLRFADETAMLEKLKVGQGCATPLSLFCDDG-DVKFVLDSAFLEGGHEKVYFHPMTNAATMGLSPEDFLIFVKATGHDPIILNFD 169          
BLAST of FC930485 vs. ExPASy Swiss-Prot
Match: U566_DANRE (UPF0566 protein OS=Danio rerio GN=zgc:64201 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.446e-19
Identity = 59/158 (37.34%), Postives = 86/158 (54.43%), Query Frame = 3
Query:  120 LKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDK----GFKAQDRCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 581
            LK L IE +  EHP V TVE    +V ++ G ++KNLFLKDKK R ++V    D  + +  LS+R  LG   LR+A E  +LE L+V  G VTP AL  ++ R V  +LD+    G      C  HP++N  ++ +   DL +FL+     P  +  +
Sbjct:   31 LKRLNIETTCIEHPEVFTVEEMMPHVSHLSGVVTKNLFLKDKKRRVFLVCVRHDRPLALGELSRR--LGAPNLRLAEERLLLEKLRVRQGCVTPLALFLDTERSVTAVLDRELTHGGHTHIHC--HPMTNSATMGITPADLLRFLEETQHTPVILSFD 184          
The following BLAST results are available for this feature:
BLAST of FC930485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
U566_XENLA7.082e-2540.85UPF0566 protein OS=Xenopus laevis PE=2 SV=1[more]
U566_BOVIN4.590e-2438.75UPF0566 protein OS=Bos taurus PE=2 SV=1[more]
U566_HUMAN2.975e-2338.61UPF0566 protein OS=Homo sapiens PE=3 SV=3[more]
U566_MOUSE8.657e-2337.04UPF0566 protein OS=Mus musculus PE=2 SV=1[more]
U566_DANRE4.446e-1937.34UPF0566 protein OS=Danio rerio GN=zgc:64201 PE=2 S... [more]
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Properties
Property NameValue
Genbank descriptionC34008A10EF PostHarvC1 Citrus clementina cDNA clone C34008A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930485 ID=FC930485; Name=FC930485; organism=Citrus clementina; type=EST; length=665bp
GGAGTTCTACCATTTTCTCTGCGCCGTAGGCTGTAGCTCCCTGCTGCGAC
TTTACTTGGAGACGGGAACTGAGACGAAAGAGAATAATGGCTTATTCGAA
GGACCAGTTGCTTGCTCGATTAAAGGATCTTCAAATTGAATTTTCTCAAT
ATGAGCACCCTGCTGTTATGACAGTTGAAGCTCAGGCAAAGTATGTTGGG
AACATAGGAGGCGGACTCAGTAAAAATTTGTTCTTGAAGGACAAGAAACA
TAGGTTCTATATTGTTTCTGCATTGGCAGATACAAAAGTAGATATGAAAG
TTTTATCTCAAAGACTTGGTCTGGGAAAGGGAGGCTTGAGGATGGCTCCT
GAGGAGACAATGCTTGAAATACTTAAGGTGCCGTTGGGAAGCGTTACTCC
ATTTGCACTGGTGAATGAATCTGCACGAGATGTTGCACTGTTGTTGGATA
AAGGATTCAAAGCTCAGGATCGATGCTTCTTCCACCCATTGTCCAATGAC
ATGTCAATCTCTCTTAACACCAATGATCTTGACAAGTTTCTCAAATCAAT
TGGCAGAGACCCAGCATATGTTGACCTGGAGGCTAACCCTGCAGTCGGGA
AGGACCAGCCTCCCGACCTCGCTGCTTTTGTTCCATCTGCTTCTACGGTT
CTGCCTGATCTTCCT
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