FC930492

Overview
NameFC930492
Unique NameFC930492
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930492 vs. ExPASy Swiss-Prot
Match: AOX1_MANIN (Alternative oxidase, mitochondrial OS=Mangifera indica GN=AOMI 1 PE=1 SV=2)

HSP 1 Score: 276.174 bits (705), Expect = 1.282e-73
Identity = 130/143 (90.91%), Postives = 141/143 (98.60%), Query Frame = 3 
Query:    3 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 431
            IKALLEEAENERMHLMTMVELV+PKWYER+LVL VQGVFFN+FFVLY+LSPKLAHR+VGYLEEEAIHSYTEYLKDIDSG+I+N+PAPAIAIDYWRLPKDATLKDVITV+RADEAHHRDVNHFASD+Q QGKELRDAPAP+GYH
Sbjct:  176 IKALLEEAENERMHLMTMVELVQPKWYERLLVLAVQGVFFNSFFVLYVLSPKLAHRIVGYLEEEAIHSYTEYLKDIDSGAIKNIPAPAIAIDYWRLPKDATLKDVITVVRADEAHHRDVNHFASDVQVQGKELRDAPAPVGYH 318
[Close]
BLAST of FC930492 vs. ExPASy Swiss-Prot
Match: AOX2_SOYBN (Alternative oxidase 2, mitochondrial OS=Glycine max GN=AOX2 PE=1 SV=2)

HSP 1 Score: 275.789 bits (704), Expect = 1.674e-73
Identity = 131/143 (91.61%), Postives = 140/143 (97.90%), Query Frame = 3 
Query:    3 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 431
            IKALLEEAENERMHLMTMVELVKPKWYER+LVL VQGVFFNAFFVLY+LSPK+AHR+VGYLEEEAIHSYTEYLKD++SG+IENVPAPAIAIDYWRLPKDA LKDVITVIRADEAHHRDVNHFASDI FQGKELR+APAP+GYH
Sbjct:  191 IKALLEEAENERMHLMTMVELVKPKWYERLLVLAVQGVFFNAFFVLYILSPKVAHRIVGYLEEEAIHSYTEYLKDLESGAIENVPAPAIAIDYWRLPKDARLKDVITVIRADEAHHRDVNHFASDIHFQGKELREAPAPIGYH 333
[Close]
BLAST of FC930492 vs. ExPASy Swiss-Prot
Match: AOX2_ARATH (Alternative oxidase 2, mitochondrial OS=Arabidopsis thaliana GN=AOX2 PE=1 SV=2)

HSP 1 Score: 261.151 bits (666), Expect = 4.267e-69
Identity = 123/143 (86.01%), Postives = 137/143 (95.80%), Query Frame = 3 
Query:    3 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 431
            IKALLEEAENERMHLMTM+ELVKPKWYER+LV+ VQG+FFN+FFV Y++SP+LAHRVVGYLEEEAIHSYTE+LKDID+G IENV APAIAIDYWRLPKDATLKDV+TVIRADEAHHRDVNHFASDI+ QGKELR+A AP+GYH
Sbjct:  211 IKALLEEAENERMHLMTMMELVKPKWYERLLVMLVQGIFFNSFFVCYVISPRLAHRVVGYLEEEAIHSYTEFLKDIDNGKIENVAAPAIAIDYWRLPKDATLKDVVTVIRADEAHHRDVNHFASDIRNQGKELREAAAPIGYH 353
[Close]
BLAST of FC930492 vs. ExPASy Swiss-Prot
Match: AOX3_SOYBN (Alternative oxidase 3, mitochondrial OS=Glycine max GN=AOX3 PE=1 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.517e-66
Identity = 119/143 (83.22%), Postives = 131/143 (91.61%), Query Frame = 3 
Query:    3 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 431
            IKALLEEAENERMHLMTMVELVKP W+ER+L+ T QGVFFNAFFV YLLSPK AHR VGYLEEEA+ SYT++L  I+SG +ENVPAPAIAIDYWRLPKDATLKDV+TVIRADEAHHRDVNHFASDI  QGKEL++APAP+GYH
Sbjct:  184 IKALLEEAENERMHLMTMVELVKPSWHERLLIFTAQGVFFNAFFVFYLLSPKAAHRFVGYLEEEAVISYTQHLNAIESGKVENVPAPAIAIDYWRLPKDATLKDVVTVIRADEAHHRDVNHFASDIHHQGKELKEAPAPIGYH 326
[Close]
BLAST of FC930492 vs. ExPASy Swiss-Prot
Match: AOX1A_ARATH (Alternative oxidase 1a, mitochondrial OS=Arabidopsis thaliana GN=AOX1A PE=1 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 1.517e-66
Identity = 115/143 (80.42%), Postives = 134/143 (93.71%), Query Frame = 3 
Query:    3 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 431
            IKALLEEAENERMHLMT +E+ KPKWYER LV+TVQGVFFNA+F+ YL+SPK AHR+VGYLEEEAIHSYTE+LK++D G+IENVPAPAIAIDYWRLP DATL+DV+ V+RADEAHHRDVNHFASDI +QG+EL++APAP+GYH
Sbjct:  212 IKALLEEAENERMHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFASDIHYQGRELKEAPAPIGYH 354
[Close]
BLAST of FC930492 vs. ExPASy Swiss-Prot
Match: AOX2_TOBAC (Alternative oxidase 2, mitochondrial OS=Nicotiana tabacum GN=AOX2 PE=1 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 1.678e-65
Identity = 113/143 (79.02%), Postives = 131/143 (91.61%), Query Frame = 3 
Query:    3 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 431
            IKALLEEAENERMHLMT +E+ KP WYER LV  VQGVF NA+FV YLLSPKLAHR+VGYLEEEAIHSYTE+LK++D G+IENVPAPAIAIDYWRLPKD+TL+DV+ V+RADEAHHRDVNHFA DI +QG++L+D+PAP+GYH
Sbjct:  155 IKALLEEAENERMHLMTFMEVAKPNWYERALVFAVQGVFINAYFVTYLLSPKLAHRIVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWRLPKDSTLRDVVLVVRADEAHHRDVNHFAPDIHYQGQQLKDSPAPIGYH 297
[Close]
BLAST of FC930492 vs. ExPASy Swiss-Prot
Match: AOX3_ARATH (Alternative oxidase 3, mitochondrial OS=Arabidopsis thaliana GN=AOX3 PE=2 SV=2)

HSP 1 Score: 248.054 bits (632), Expect = 3.738e-65
Identity = 112/143 (78.32%), Postives = 132/143 (92.31%), Query Frame = 3 
Query:    3 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 431
            IKALLEEAENERMHLMT +EL +PKWYER +V TVQGVFFNA+F+ Y++SPKLAHR+ GYLEEEA++SYTE+LKDID+G  EN PAPAIAIDYWRLPKDATL+DV+ VIRADEAHHRD+NH+ASDIQF+G EL++APAP+GYH
Sbjct:  176 IKALLEEAENERMHLMTFIELSQPKWYERAIVFTVQGVFFNAYFLAYVISPKLAHRITGYLEEEAVNSYTEFLKDIDAGKFENSPAPAIAIDYWRLPKDATLRDVVYVIRADEAHHRDINHYASDIQFKGHELKEAPAPIGYH 318
[Close]
BLAST of FC930492 vs. ExPASy Swiss-Prot
Match: AOX1B_ARATH (Alternative oxidase 1b, mitochondrial OS=Arabidopsis thaliana GN=AOX1B PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 4.132e-64
Identity = 110/143 (76.92%), Postives = 132/143 (92.31%), Query Frame = 3 
Query:    3 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 431
            IKALLEEAENERMHLMT +E+ KP WYER LV+ VQG+FFNA+F+ YL+SPK AHR+VGYLEEEAIHSYTE+LK++D+G+IENVPAPAIAIDYWRL  DATL+DV+ V+RADEAHHRDVNH+ASDI +QG+EL++APAP+GYH
Sbjct:  183 IKALLEEAENERMHLMTFMEVAKPNWYERALVIAVQGIFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDNGNIENVPAPAIAIDYWRLEADATLRDVVMVVRADEAHHRDVNHYASDIHYQGRELKEAPAPIGYH 325
[Close]
BLAST of FC930492 vs. ExPASy Swiss-Prot
Match: AOX1_TOBAC (Alternative oxidase 1, mitochondrial OS=Nicotiana tabacum GN=AOX1 PE=1 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 5.397e-64
Identity = 112/143 (78.32%), Postives = 130/143 (90.91%), Query Frame = 3 
Query:    3 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 431
            IK LL+EAENERMHLMT +E+ KP WYER LV  VQGVFFNA+FV YLLSPKLAHR+VGYLEEEAIHSYTE+LK++D G+IENVPAPAIAIDY RLPKD+TL DV+ V+RADEAHHRDVNHFASDI +QG++L+D+PAP+GYH
Sbjct:  211 IKTLLDEAENERMHLMTFMEVAKPNWYERALVFAVQGVFFNAYFVTYLLSPKLAHRIVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYCRLPKDSTLLDVVLVVRADEAHHRDVNHFASDIHYQGQQLKDSPAPIGYH 353
[Close]
BLAST of FC930492 vs. ExPASy Swiss-Prot
Match: AOX1C_ARATH (Alternative oxidase 1c, mitochondrial OS=Arabidopsis thaliana GN=AOX1C PE=1 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 9.206e-64
Identity = 109/143 (76.22%), Postives = 132/143 (92.31%), Query Frame = 3 
Query:    3 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 431
            IKALLEEAENERMHLMT +E+ KPKWYER LV++VQGVFFNA+ + Y++SPK AHR+VGYLEEEAIHSYTE+LK++D+G+IENVPAPAIA+DYWRL  DATL+DV+ V+RADEAHHRDVNH+ASDI +QG EL++APAP+GYH
Sbjct:  187 IKALLEEAENERMHLMTFMEVAKPKWYERALVISVQGVFFNAYLIGYIISPKFAHRMVGYLEEEAIHSYTEFLKELDNGNIENVPAPAIAVDYWRLEADATLRDVVMVVRADEAHHRDVNHYASDIHYQGHELKEAPAPIGYH 329
The following BLAST results are available for this feature:
BLAST of FC930492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
AOX1_MANIN1.282e-7390.91Alternative oxidase, mitochondrial OS=Mangifera in... [more]
AOX2_SOYBN1.674e-7391.61Alternative oxidase 2, mitochondrial OS=Glycine ma... [more]
AOX2_ARATH4.267e-6986.01Alternative oxidase 2, mitochondrial OS=Arabidopsi... [more]
AOX3_SOYBN1.517e-6683.22Alternative oxidase 3, mitochondrial OS=Glycine ma... [more]
AOX1A_ARATH1.517e-6680.42Alternative oxidase 1a, mitochondrial OS=Arabidops... [more]
AOX2_TOBAC1.678e-6579.02Alternative oxidase 2, mitochondrial OS=Nicotiana ... [more]
AOX3_ARATH3.738e-6578.32Alternative oxidase 3, mitochondrial OS=Arabidopsi... [more]
AOX1B_ARATH4.132e-6476.92Alternative oxidase 1b, mitochondrial OS=Arabidops... [more]
AOX1_TOBAC5.397e-6478.32Alternative oxidase 1, mitochondrial OS=Nicotiana ... [more]
AOX1C_ARATH9.206e-6476.22Alternative oxidase 1c, mitochondrial OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC34008B05EF PostHarvC1 Citrus clementina cDNA clone C34008B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930492 ID=FC930492; Name=FC930492; organism=Citrus clementina; type=EST; length=732bp
GGATCAAAGCTCTGCTTGAAGAAGCAGAGAATGAGAGGATGCATCTGATG
ACCATGGTGGAGCTTGTGAAGCCCAAATGGTATGAGAGGATGCTTGTTCT
GACTGTGCAGGGTGTCTTTTTCAATGCATTCTTTGTGCTTTATCTACTCT
CACCTAAACTGGCTCATAGAGTTGTTGGCTACTTGGAGGAGGAGGCTATA
CACTCTTACACTGAATATCTCAAGGATATTGATAGTGGATCTATTGAAAA
TGTTCCAGCCCCTGCTATTGCTATTGACTATTGGAGGTTACCTAAGGATG
CTACACTCAAGGATGTTATTACTGTTATTCGTGCTGACGAAGCTCATCAT
CGGGATGTCAACCATTTTGCTTCTGATATACAGTTTCAGGGGAAGGAATT
AAGAGATGCTCCTGCCCCTCTTGGTTACCACTGAGATGGGATGAATTTGA
GATTGTTTGTCAGATTTGTGGTTGAGGTACTTCTACATGGATTGGTCTGA
GATAATGAGGTTTCTGTATATGCTGAGAATAGTACACTAGGAGTATGAAA
TCTCAAGCTAAATGAAAAAGGGGTATAGAGTTTTCTGTATATGCTGAGAA
TAGTACACTAGGAGTATGAAGTGTCAAGCTAAATGAAAAAGGGGTATAGA
CTAAATAAACACATCTGACTTTCTAAACCCAATTTGGTTGAATTTTATAA
GCTTTGAGATTAGACTGCTTTTGTTTCTGTAT
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