FC930499

Overview
NameFC930499
Unique NameFC930499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930499_ssr656 microsatellite FC930499_ssr656:656..667. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig517 contig Ccv1_Contig517:211..952. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: Y1770_SYNY3 (Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC 6803) GN=sll1770 PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.169e-62
Identity = 114/212 (53.77%), Postives = 155/212 (73.11%), Query Frame = 3
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDEA-LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYA 635
            FR   W++VP V+W YT+T++LTLEY+PG+KI+   AL+  G  R ++A     AYL Q+L  GFFHADPHPGNLAV  +   LI+YDFGMMGEI   T+ +L+D  + V EK+A++++  L+ L AL+ T DM  +RRSVQF LDN + + P ++Q++  I +DL+ IA DQPFRFP+TFTFV+RAFST EG+G  LDPDF+F+ VA P+A
Sbjct:  249 FRGEDWVKVPRVYWRYTSTQILTLEYLPGIKISHYDALEAAGLERKELAQLGARAYLFQLLNHGFFHADPHPGNLAVSPEAGELIFYDFGMMGEITPDTKNKLMDTLFGVAEKNAERIVNSLVALGALKETEDMGPIRRSVQFLLDNFMDK-PFEEQSITKISDDLYEIAYDQPFRFPATFTFVMRAFSTLEGVGKGLDPDFNFMAVAQPFA 459          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: Y095_SYNY3 (Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC 6803) GN=sll0095 PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.134e-47
Identity = 85/212 (40.09%), Postives = 134/212 (63.21%), Query Frame = 3
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F +   +RVP ++W YT   VLTLEY+PG+K+++ +AL+  G N   +    I AYL Q+L  GFF +DPHPGN+AVD    LI+YDFG M E+K   +++++  F+AV  KD  +V++ LI +  ++P GD+S ++R + F LDN     P   +    +GE+++A+ Q QPFR P   TF++++ ST +GI   LDP ++ +  + P+ Q
Sbjct:  226 FADYPRVRVPEIYWQYTTRMVLTLEYLPGIKVDDRQALETAGINLDLVIQTGICAYLKQLLVDGFFQSDPHPGNMAVDSQGDLIFYDFGTMAEVKIIAKDQMVQTFFAVLRKDTNQVLEALIYMGLVEPKGDLSPIKRIINFLLDN-FRDKPIDIKAFDQVGEEVYAMFQQQPFRLPPQMTFILKSISTLDGIARALDPRYNLIAASQPFIQ 436          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: Y1919_SYNY3 (Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC 6803) GN=slr1919 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.502e-32
Identity = 72/204 (35.29%), Postives = 112/204 (54.90%), Query Frame = 3
Query:   21 LRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPY 632
            ++VP ++W Y+  KVLTLE++ G K+ +   +   G + S I    + + L Q+L+ GFFHADPHPGNL   LD  + Y DFGMM +++  T+E +      +  KD   + +  I L  L P  D++ +  +++    + + QS  Q      I +D   +  D PFR P+ F  +IR+  T EG+   LDP+F  V+VA PY
Sbjct:  240 VKVPCIYWQYSNQKVLTLEWIQGFKLTDTDKIRAAGLDPSDIIRIGVTSGLRQLLEHGFFHADPHPGNLFATLDGRMAYIDFGMMDQLEPGTKETIASSIVQLINKDYLALTEDFIALGFLAPNTDITPIIPALENVFGSAIGQSV-QDFNFKTITDDFSELMYDYPFRVPAKFALIIRSLVTQEGLALSLDPNFKIVEVAYPY 442          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: Y005_SYNY3 (Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC 6803) GN=sll0005 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.118e-31
Identity = 68/202 (33.66%), Postives = 112/202 (55.45%), Query Frame = 3
Query:   27 VPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPY 632
            VP ++W YT  +VLT+E+V G+K+  +KA+  QG + + +    ++  L Q+L+ GFFHADPHPGNL    D  L Y DFGMM  I+ + R  L++    +  +D   + +  + L+ L+P  D+  +  ++     N L  S   +    +I + + A+  + PFR P+ +  +IR+  T EGI   +DP+F  +  A PY
Sbjct:  275 VPSIYWQYTGRRVLTMEWVEGIKLTNIKAIQAQGIDATHLVEVGVQCSLRQLLEHGFFHADPHPGNLLAMADGRLAYLDFGMMSTIQPYQRYGLIEAVVHLVNRDFDSLAKDYVKLDFLKPDTDLKPIIPALGQVFGNALGASV-AELNFKSITDQMSAMMYEFPFRVPAYYALIIRSMVTLEGIAIGIDPNFKVLSKAYPY 475          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: Y1960_ARATH (Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.839e-29
Identity = 66/202 (32.67%), Postives = 109/202 (53.96%), Query Frame = 3
Query:   27 VPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPY 632
            VP +FWDYT+ KVLT+E+V G K+NE  A++ QG     + +  I+  L Q+L+ GFFHADPHPGNL    D  L + DFGMM E     R  ++     +  +D + + +    L+ L P  D++ +  +++ F D+ L+ +   +     + + L A+    PF  P  +  ++R+ +  EG+    DP+F  +  + PY
Sbjct:  319 VPDIFWDYTSRKVLTMEWVEGTKLNEQLAIESQGLKVLDLVNTGIQCSLRQLLEYGFFHADPHPGNLLATPDGKLAFLDFGMMSETPEEARFAIIGHVVHLVNRDYEAMARDYYALKFLSPDVDVTPIIPALRDFFDDALNYTV-SELNFKTLVDGLGAVFYQYPFNVPPYYALILRSLTVLEGLALYADPNFKVLAASYPY 519          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: YHG1_CLOPA (Uncharacterized protein in hydrogenase 1 5'region (Fragment) OS=Clostridium pasteurianum PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.278e-24
Identity = 58/210 (27.62%), Postives = 112/210 (53.33%), Query Frame = 3
Query:    9 NIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            ++K++R P         K++ +E + G+KI+ LK L  +GY+  ++  +   +Y  Q+ + GFFH DPHPGNL +  +  + Y DFG+MG I    +  L D   AV   D  K+I  ++ +   +   + +S+  S+++  DN +S S  +   ++ + +++F I+++   + P   T ++++    EG+   + P+ S V V  PY +
Sbjct:  198 DVKFVRTPYTIDKLCTEKIIVMEKIVGIKIDNLKKLLNEGYDLEELGKKLTLSYFKQVFQDGFFHGDPHPGNLLI-RENHICYIDFGIMGTISKSLKISLNDAILAVAYHDVNKMISVIMSIGVKKGYVNRNSLYESIEYLFDNYISVSL-KNIKISVMLQEIFQISKNNNIKLPKELTMLLKSTLMIEGVIARISPELSIVDVLIPYVK 405          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: Y1181_ARATH (Uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic OS=Arabidopsis thaliana GN=At1g71810 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.165e-21
Identity = 63/210 (30.00%), Postives = 105/210 (50.00%), Query Frame = 3
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPY 632
            +  IK + VP ++ +Y+ +KVL +E+V G K+NE+  L L            +    NQ+L+ GF+HADPHPGN     D  L Y DFGMMG+ +   R+  ++    +  +D K + +  + L  L PT + S+V +++     + +S+          +G DL        FR P  F+ VIR+ +  EGI   + P++  +    P+
Sbjct:  283 YGGIKDVLVPKMYTEYSTSKVLVMEWVEGQKLNEVNDLYL--------VEVGVYCSFNQLLEYGFYHADPHPGNFLRTYDGQLAYLDFGMMGDFRPELRDGFMEACLHLVNRDFKALAKDFVTLGLLPPTAEKSAVTKALTDVFQDAISRGVRNISFGDLLG-DLGKTMYRFKFRIPPYFSLVIRSLAVLEGIAIGISPNYKVLGSTYPW 483          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_XYLFT (Probable ubiquinone biosynthesis protein ubiB OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=ubiB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.987e-21
Identity = 59/207 (28.50%), Postives = 103/207 (49.76%), Query Frame = 3
Query:   27 VPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDEA------LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAP 629
            VP V W +TA +VLTLE + G+  +++  LD  G +R  ++S+ I  +  Q+ +  FFHAD H GN+ VD D A       I  DFG+MG++    +  L + F A++ KD +++ +  ++   + P   +  +  + +   +   ++ P  Q +LA +   LF +A+            + +     EG+G  LDP+     VA P
Sbjct:  224 VPEVIWSHTAERVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFRDNFFHADAHSGNIWVDSDPARKSNPRFIVLDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAELHVEAGWIPPHVRIEELEAAARSVCEPYFTR-PLSQISLAEVMMKLFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDPELDIWVVARP 429          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_XYLF2 (Probable ubiquinone biosynthesis protein ubiB OS=Xylella fastidiosa (strain M23) GN=ubiB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.987e-21
Identity = 59/207 (28.50%), Postives = 103/207 (49.76%), Query Frame = 3
Query:   27 VPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDEA------LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAP 629
            VP V W +TA +VLTLE + G+  +++  LD  G +R  ++S+ I  +  Q+ +  FFHAD H GN+ VD D A       I  DFG+MG++    +  L + F A++ KD +++ +  ++   + P   +  +  + +   +   ++ P  Q +LA +   LF +A+            + +     EG+G  LDP+     VA P
Sbjct:  224 VPEVIWSHTAERVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFRDNFFHADAHSGNIWVDSDPARKSNPRFIVLDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAELHVEAGWIPPHVRIEELEAAARSVCEPYFTR-PLSQISLAEVMMKLFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDPELDIWVVARP 429          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_NEIMB (Probable ubiquinone biosynthesis protein ubiB OS=Neisseria meningitidis serogroup B GN=ubiB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.987e-21
Identity = 57/210 (27.14%), Postives = 102/210 (48.57%), Query Frame = 3
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPY 632
            F+N   L VP VF+DY  + VLT+E++ G  ++++  L   G +  ++A   +E +  Q+ + GFFHAD HPGN+ V  D   I  DFG++G +  + +  L   F A + +D ++V    I+   +        +  +V+   + + ++ P  Q +   +   LF +++            + +     EG+G  LDPD    K A P+
Sbjct:  215 FQNSDMLIVPKVFYDYCTSDVLTIEWMDGTPVSDIAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHADMHPGNILVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAHIESGWVPADTRAEELEAAVRAVCEPVFNK-PISQISFGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQLDPDLDLWKTAKPF 423          
The following BLAST results are available for this feature:
BLAST of FC930499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
Y1770_SYNY35.169e-6253.77Uncharacterized protein sll1770 OS=Synechocystis s... [more]
Y095_SYNY36.134e-4740.09Uncharacterized protein sll0095 OS=Synechocystis s... [more]
Y1919_SYNY32.502e-3235.29Uncharacterized protein slr1919 OS=Synechocystis s... [more]
Y005_SYNY32.118e-3133.66Uncharacterized protein sll0005 OS=Synechocystis s... [more]
Y1960_ARATH9.839e-2932.67Uncharacterized aarF domain-containing protein kin... [more]
YHG1_CLOPA4.278e-2427.62Uncharacterized protein in hydrogenase 1 5'region ... [more]
Y1181_ARATH1.165e-2130.00Uncharacterized aarF domain-containing protein kin... [more]
UBIB_XYLFT1.987e-2128.50Probable ubiquinone biosynthesis protein ubiB OS=X... [more]
UBIB_XYLF21.987e-2128.50Probable ubiquinone biosynthesis protein ubiB OS=X... [more]
UBIB_NEIMB1.987e-2127.14Probable ubiquinone biosynthesis protein ubiB OS=N... [more]

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Properties
Property NameValue
Genbank descriptionC34008B12EF PostHarvC1 Citrus clementina cDNA clone C34008B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930499 ID=FC930499; Name=FC930499; organism=Citrus clementina; type=EST; length=742bp
ATTTTCGGAATATAAAGTGGCTCCGGGTACCTCTGGTGTTTTGGGATTAT
ACTGCTACAAAGGTGTTGACATTGGAGTATGTACCAGGAGTTAAGATCAA
TGAGTTGAAAGCACTAGATTTGCAGGGTTATAATCGTTCTCAAATTGCAT
CGCGTGCAATTGAAGCGTACTTGAATCAGATACTCAAAACTGGTTTCTTT
CATGCTGATCCTCATCCTGGAAATCTTGCTGTCGATTTAGATGAAGCACT
CATCTATTATGATTTTGGTATGATGGGGGAGATTAAATCCTTTACCCGTG
AAAGATTGCTTGATCTTTTCTATGCAGTTTATGAGAAAGATGCCAAAAAG
GTTATCCAAAGGTTGATTGATCTCGAAGCACTTCAACCCACAGGAGATAT
GTCATCGGTAAGGAGATCCGTGCAATTTTTCTTGGACAATTTGCTAAGCC
AGAGTCCAGATCAGCAGCAGACTTTGGCTGCAATTGGAGAGGATTTGTTT
GCAATAGCTCAAGATCAACCATTTCGGTTTCCATCCACCTTTACTTTCGT
TATAAGGGCATTCTCCACACCTGAAGGTATCGGCAACATTCTTGACCCAG
ATTTTTCCTTTGTGAAGGTTGCTGCACCTTATGCACAGGAGCTATTGGAT
TTAAACAGCAGCAGCAGTCTGGAACACAGCTAGTGGAAGCAATCAGGGAA
ACAGCTGATGATGCCAGATCTTTCGACATGTCCATGCCATCC
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