FC930503

Overview
NameFC930503
Unique NameFC930503
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15161 contig Ccv1_Contig15161:1..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930503 vs. ExPASy Swiss-Prot
Match: PDCL3_HUMAN (Phosducin-like protein 3 OS=Homo sapiens GN=PDCL3 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.951e-28
Identity = 62/134 (46.27%), Postives = 87/134 (64.93%), Query Frame = 1
Query:  253 YRKKRLAEMREATKISRFGSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCIPNYPDRNLPTVLVYNNGAVKANYVGLRSF-GRRCTPEGVALVLCQSDPVLND 651
            YR++RLAE +     ++FG V+ ISG D+V+EV++A   +WV++ LYK G   C L+ Q L  LARK+P  KF+K IST CIPNYPDRNLPT+ VY  G +KA ++G   F G   T + +   L +S  ++ D
Sbjct:   74 YRRRRLAEWKATKLKNKFGEVLEISGKDYVQEVTKAGEGLWVILHLYKQGIPLCALINQHLSGLARKFPDVKFIKAISTTCIPNYPDRNLPTIFVYLEGDIKAQFIGPLVFGGMNLTRDELEWKLSESGAIMTD 207          
BLAST of FC930503 vs. ExPASy Swiss-Prot
Match: PDCL3_PONAB (Phosducin-like protein 3 OS=Pongo abelii GN=PDCL3 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.328e-28
Identity = 62/134 (46.27%), Postives = 87/134 (64.93%), Query Frame = 1
Query:  253 YRKKRLAEMREATKISRFGSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCIPNYPDRNLPTVLVYNNGAVKANYVGLRSF-GRRCTPEGVALVLCQSDPVLND 651
            YR++RLAE +     ++FG V+ ISG D+V+EV++A   +WV++ LYK G   C L+ Q L  LARK+P  KF+K IST CIPNYPDRNLPT+ VY  G +KA ++G   F G   T + +   L +S  ++ D
Sbjct:   74 YRRQRLAEWKVTKLKNKFGEVLEISGKDYVQEVTKAGEGLWVILHLYKQGIPLCALINQHLSGLARKFPDVKFIKAISTTCIPNYPDRNLPTIFVYLEGDIKAQFIGPLVFGGMNLTRDELEWKLSESGAIMTD 207          
BLAST of FC930503 vs. ExPASy Swiss-Prot
Match: PDCL3_RAT (Phosducin-like protein 3 OS=Rattus norvegicus GN=Pdcl3 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.414e-28
Identity = 59/112 (52.68%), Postives = 77/112 (68.75%), Query Frame = 1
Query:  253 YRKKRLAEMREATKISRFGSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCIPNYPDRNLPTVLVYNNGAVKANYVGLRSFG 588
            YR++RLAE +     ++FG V+ ISG D+V+EV++A   +WVV+ LYK G   C L+   L  LARK+P  KF+K IST CIPNYPDRNLPTV VY  G +KA ++G   FG
Sbjct:   75 YRQQRLAEWKATQLRNKFGEVLEISGKDYVQEVTKAGEGLWVVLHLYKQGIPLCSLINHHLSGLARKFPDVKFIKAISTTCIPNYPDRNLPTVFVYREGDIKAQFIGPLVFG 186          
BLAST of FC930503 vs. ExPASy Swiss-Prot
Match: PDCL3_MOUSE (Phosducin-like protein 3 OS=Mus musculus GN=Pdcl3 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.683e-28
Identity = 58/112 (51.79%), Postives = 77/112 (68.75%), Query Frame = 1
Query:  253 YRKKRLAEMREATKISRFGSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCIPNYPDRNLPTVLVYNNGAVKANYVGLRSFG 588
            YR++RLAE +     ++FG V+ ISG D+V+EV++A   +WV++ LYK G   C L+   L  LARK+P  KF+K IST CIPNYPDRNLPTV VY  G +KA ++G   FG
Sbjct:   75 YRQQRLAEWKATQLKNKFGEVLEISGKDYVQEVTKAGEGLWVILHLYKQGIPLCSLINHHLSGLARKFPDVKFIKAISTTCIPNYPDRNLPTVFVYREGDIKAQFIGPLVFG 186          
BLAST of FC930503 vs. ExPASy Swiss-Prot
Match: PDCL3_BOVIN (Phosducin-like protein 3 OS=Bos taurus GN=PDCL3 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.652e-27
Identity = 58/112 (51.79%), Postives = 78/112 (69.64%), Query Frame = 1
Query:  253 YRKKRLAEMREATKISRFGSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCIPNYPDRNLPTVLVYNNGAVKANYVGLRSFG 588
            YR++RLAE +     ++FG V+ ISG D+V+EV++A   +WV++ LYK G   C L+ Q L  LARK+P  KF+K IST CIP+YPDRNLPTV VY  G +KA ++G   FG
Sbjct:   75 YRQQRLAEWKATQLKNKFGEVLEISGKDYVQEVTKAGEGLWVILHLYKQGIPLCALINQHLSALARKFPDVKFIKAISTTCIPSYPDRNLPTVFVYLEGDIKAQFIGPLVFG 186          
BLAST of FC930503 vs. ExPASy Swiss-Prot
Match: VIAF1_DROME (Viral IAP-associated factor homolog OS=Drosophila melanogaster GN=viaf PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.157e-27
Identity = 60/145 (41.38%), Postives = 95/145 (65.52%), Query Frame = 1
Query:  253 YRKKRLAEMREATKISRFGSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCIPNYPDRNLPTVLVYNNGAVKANYVG-LRSFGRRCTPEGVALVLCQSDPVLNDGQSGSDPSRKT 684
            YR++R+AEMR   + +RFGSV  ISG D+V EV++A   +WVV+ LY +G   C L+   +++LA ++P TKFV+ ++T CIPN+P++NLPT+ +Y+ GA++  Y+G L   G + T E +  +L         GQ+G+ P+  T
Sbjct:   82 YRQRRIAEMRATAEKARFGSVREISGQDYVNEVTKAGEGIWVVLHLYANGVPLCALIHHHMQQLAVRFPQTKFVRSVATTCIPNFPEKNLPTIFIYHEGALRKQYIGPLELRGDKLTAEELEFML---------GQAGAVPTEIT 217          
BLAST of FC930503 vs. ExPASy Swiss-Prot
Match: PDCL3_DANRE (Phosducin-like protein 3 OS=Danio rerio GN=pdcl3 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.197e-27
Identity = 58/112 (51.79%), Postives = 78/112 (69.64%), Query Frame = 1
Query:  253 YRKKRLAEMREATKISRFGSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCIPNYPDRNLPTVLVYNNGAVKANYVGLRSFG 588
            YR KRLAE +     + FG +  ISG D+V+EV++A   +WVV+ LYK G   C L+ Q L +LARK+P +KF+K IS+ CIPNYPDRNLPT+ VY +G +KA ++G   FG
Sbjct:   72 YRLKRLAEWKANQMKNVFGELKEISGQDYVQEVNKAGEGIWVVLHLYKQGIPLCSLINQHLAQLARKFPQSKFLKSISSTCIPNYPDRNLPTLFVYRDGEMKAQFIGPLVFG 183          
BLAST of FC930503 vs. ExPASy Swiss-Prot
Match: PDCL2_HUMAN (Phosducin-like protein 2 OS=Homo sapiens GN=PDCL2 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.210e-23
Identity = 52/112 (46.43%), Postives = 70/112 (62.50%), Query Frame = 1
Query:  253 YRKKRLAEMREATKISRFGSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCIPNYPDRNLPTVLVYNNGAVKANYVGLRSFG 588
            YRKKRL E +   K  +FG +  ISG+ +V EV+ A  DVWV++ LY+     C L+ Q L  LARK+P TKFVK I   CI +Y D  LPT+ VY NG ++A ++G+   G
Sbjct:   72 YRKKRLQEWKALKKKQKFGELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVNSCIQHYHDNCLPTIFVYKNGQIEAKFIGIIECG 183          
BLAST of FC930503 vs. ExPASy Swiss-Prot
Match: PDCL2_BOVIN (Phosducin-like protein 2 OS=Bos taurus GN=PDCL2 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.089e-22
Identity = 50/112 (44.64%), Postives = 70/112 (62.50%), Query Frame = 1
Query:  253 YRKKRLAEMREATKISRFGSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCIPNYPDRNLPTVLVYNNGAVKANYVGLRSFG 588
            YR+KRL E +   K  +FG +  ISG+ +V EV+ A  DVWV++ LY+     C L+ Q L  LARK+P TKFVK I+  CI +Y D  LPT+ VY NG ++  ++G+   G
Sbjct:   72 YREKRLQEWKALKKKQKFGELREISGNQYVNEVTNAEKDVWVIIHLYRSSIPLCLLVNQHLSLLARKFPETKFVKAIANSCIEHYHDNCLPTIFVYKNGQIEGKFIGIIECG 183          
BLAST of FC930503 vs. ExPASy Swiss-Prot
Match: PDCL2_MOUSE (Phosducin-like protein 2 OS=Mus musculus GN=Pdcl2 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.354e-21
Identity = 49/112 (43.75%), Postives = 69/112 (61.61%), Query Frame = 1
Query:  253 YRKKRLAEMREATKISRFGSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCIPNYPDRNLPTVLVYNNGAVKANYVGLRSFG 588
            YR+KRL E +   K  +FG +  ISG+ +V EV+ A  D+WVV+ LY+     C ++ Q L  LARK+P TKFVK I   CI +Y D  LPT+ VY NG ++  ++G+   G
Sbjct:   72 YREKRLQEWKALKKKQKFGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVNSCIEHYHDNCLPTIFVYKNGQIEGKFIGIIECG 183          
The following BLAST results are available for this feature:
BLAST of FC930503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PDCL3_HUMAN1.951e-2846.27Phosducin-like protein 3 OS=Homo sapiens GN=PDCL3 ... [more]
PDCL3_PONAB3.328e-2846.27Phosducin-like protein 3 OS=Pongo abelii GN=PDCL3 ... [more]
PDCL3_RAT7.414e-2852.68Phosducin-like protein 3 OS=Rattus norvegicus GN=P... [more]
PDCL3_MOUSE9.683e-2851.79Phosducin-like protein 3 OS=Mus musculus GN=Pdcl3 ... [more]
PDCL3_BOVIN1.652e-2751.79Phosducin-like protein 3 OS=Bos taurus GN=PDCL3 PE... [more]
VIAF1_DROME2.157e-2741.38Viral IAP-associated factor homolog OS=Drosophila ... [more]
PDCL3_DANRE8.197e-2751.79Phosducin-like protein 3 OS=Danio rerio GN=pdcl3 P... [more]
PDCL2_HUMAN4.210e-2346.43Phosducin-like protein 2 OS=Homo sapiens GN=PDCL2 ... [more]
PDCL2_BOVIN2.089e-2244.64Phosducin-like protein 2 OS=Bos taurus GN=PDCL2 PE... [more]
PDCL2_MOUSE1.354e-2143.75Phosducin-like protein 2 OS=Mus musculus GN=Pdcl2 ... [more]

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Properties
Property NameValue
Genbank descriptionC34008C04EF PostHarvC1 Citrus clementina cDNA clone C34008C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930503 ID=FC930503; Name=FC930503; organism=Citrus clementina; type=EST; length=691bp
GAAAGGAGGATGGCGGATTATCACTTTGTGTACAAAGATGTAGAAGGAGC
ATCAACACAATGGGACGATATACAAAGGAAGCTCGGAAATTTGCCGCCAA
AGCCGCCTGCTTTCAAGCCCTCCGCCTTCGAACCGGCGGTGGACCCTGAT
TCGGTCCCCAAAGACAAATCGTGGGTCGATGAGAAAACTGAAGAAGAGCT
TGAAGAGTTAGAGGATGACCCCGATCTAGATGATGACCGCTTCCTCGAAG
AATACAGGAAAAAGAGGTTGGCTGAGATGAGAGAAGCAACCAAGATATCT
AGATTCGGATCAGTGATGCCAATTTCTGGATCAGATTTCGTGAGAGAGGT
TTCACAAGCTCCCCCTGATGTTTGGGTGGTTGTGATTCTCTACAAGGATG
GGTTTGCTGAGTGTGGGCTGCTTATGCAATGCTTGGAAGAGTTGGCAAGA
AAATACCCTGCAACAAAATTTGTTAAAATAATATCGACAGATTGCATTCC
TAATTACCCAGATCGTAACCTTCCCACAGTATTGGTTTACAACAATGGTG
CAGTGAAAGCAAATTATGTAGGTTTGCGTAGCTTTGGCCGGAGATGCACG
CCTGAAGGTGTTGCATTAGTTCTCTGTCAGTCAGATCCTGTGCTAAATGA
TGGTCAGAGTGGAAGTGATCCATCTAGGAAAACTGTGCTTG
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