FC930515

Overview
NameFC930515
Unique NameFC930515
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length487
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15073 contig Ccv1_Contig15073:121..607. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930515 vs. ExPASy Swiss-Prot
Match: AROB_THICR (3-dehydroquinate synthase OS=Thiomicrospira crunogena (strain XCL-2) GN=aroB PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.730e-35
Identity = 73/119 (61.34%), Postives = 91/119 (76.47%), Query Frame = 1
Query:  130 VDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 486
            V+LG+RSYPI+IG GLL   +L + +V G +VL+V+N TVAPLYL+K   A +       V+ VILPDGE YKN+D L ++FD AIE+R DR+CTFVALGGGVIGDM G+AAASY RGV
Sbjct:    6 VELGERSYPIFIGQGLLGQAELFKPYVTGTQVLIVSNTTVAPLYLEKAKQAFS----GYDVKTVILPDGEQYKNLDVLNQIFDVAIENRFDRKCTFVALGGGVIGDMTGFAAASYQRGV 120          
BLAST of FC930515 vs. ExPASy Swiss-Prot
Match: AROB_PSEE4 (3-dehydroquinate synthase OS=Pseudomonas entomophila (strain L48) GN=aroB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 4.261e-34
Identity = 72/121 (59.50%), Postives = 90/121 (74.38%), Query Frame = 1
Query:  124 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 486
            ++VDLG+RSYPIYIG GLLD P+LL  H+ G++V +V+N TVAPLYL++++  L       SV  V+LPDGE YKN +TL  VFD  + +R DRR T VALGGGVIGDM G+AAA Y RGV
Sbjct:    4 LKVDLGERSYPIYIGEGLLDQPELLAPHIAGRQVAIVSNETVAPLYLERLSKTLGA----YSVLPVVLPDGEKYKNWETLQLVFDALLSARHDRRTTVVALGGGVIGDMAGFAAACYQRGV 120          
BLAST of FC930515 vs. ExPASy Swiss-Prot
Match: AROB_PSEF5 (3-dehydroquinate synthase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=aroB PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 7.267e-34
Identity = 70/121 (57.85%), Postives = 91/121 (75.21%), Query Frame = 1
Query:  124 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 486
            ++VDLG+RSYPI+IG GLLD P+LL  H+ G++V +++N TVAPLYL++    LTR     SV +V+LPDGE YKN +TL  +FD  + +R DRR T +ALGGGVIGDM G+AAA Y RGV
Sbjct:    4 LKVDLGERSYPIHIGEGLLDQPELLVPHIAGRQVAIISNETVAPLYLER----LTRSLGQFSVISVVLPDGEAYKNWETLQLIFDGLLTARHDRRTTIIALGGGVIGDMAGFAAACYQRGV 120          
BLAST of FC930515 vs. ExPASy Swiss-Prot
Match: AROB_PSEPF (3-dehydroquinate synthase OS=Pseudomonas fluorescens (strain Pf0-1) GN=aroB PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 9.492e-34
Identity = 68/121 (56.20%), Postives = 93/121 (76.86%), Query Frame = 1
Query:  124 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 486
            ++VDLG+RSYPI+IG GLLD P+LL  H+ G++V +++N TVAPLYL+++T +L +     SV +V+LPDGE +KN +TL  +FD  + +R DRR T +ALGGGVIGDM G+AAA Y RGV
Sbjct:    4 LKVDLGERSYPIHIGEGLLDQPELLAPHIHGRQVAIISNETVAPLYLERLTRSLAQ----FSVVSVVLPDGEAFKNWETLQLIFDGLLTARHDRRTTVIALGGGVIGDMAGFAAACYQRGV 120          
BLAST of FC930515 vs. ExPASy Swiss-Prot
Match: AROB_PSEPW (3-dehydroquinate synthase OS=Pseudomonas putida (strain W619) GN=aroB PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.114e-33
Identity = 71/121 (58.68%), Postives = 91/121 (75.21%), Query Frame = 1
Query:  124 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 486
            ++VDLG+RSYPIYIG GLLD P+LL  H+ G+++ +V+N TVAPLYL++++ AL       SV  VILPDGE +KN +TL  +FD  + +R DRR T VALGGGVIGDM G+AAA Y RGV
Sbjct:    4 LKVDLGERSYPIYIGEGLLDQPELLAPHIAGRQIAIVSNETVAPLYLERLSKALGA----YSVLPVILPDGEAHKNWETLQLIFDGLLTARHDRRTTVVALGGGVIGDMAGFAAACYQRGV 120          
BLAST of FC930515 vs. ExPASy Swiss-Prot
Match: AROB_PSEPK (3-dehydroquinate synthase OS=Pseudomonas putida (strain KT2440) GN=aroB PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.114e-33
Identity = 71/121 (58.68%), Postives = 91/121 (75.21%), Query Frame = 1
Query:  124 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 486
            ++VDLG+RSYPIYIG GLLD P+LL  H+ G++V +V+N TVAPLYL++++ AL       SV  V+LPDGE +KN +TL  +FD  + +R DRR T VALGGGVIGDM G+AAA Y RGV
Sbjct:    4 LKVDLGERSYPIYIGEGLLDQPELLAPHIAGRQVAIVSNETVAPLYLERLSKALGA----YSVLPVVLPDGEAHKNWETLQLIFDGLLTARHDRRTTVVALGGGVIGDMAGFAAACYQRGV 120          
BLAST of FC930515 vs. ExPASy Swiss-Prot
Match: AROB_PSEP1 (3-dehydroquinate synthase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=aroB PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.114e-33
Identity = 71/121 (58.68%), Postives = 91/121 (75.21%), Query Frame = 1
Query:  124 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 486
            ++VDLG+RSYPIYIG GLLD P+LL  H+ G++V +V+N TVAPLYL++++ AL       SV  V+LPDGE +KN +TL  +FD  + +R DRR T VALGGGVIGDM G+AAA Y RGV
Sbjct:    4 LKVDLGERSYPIYIGEGLLDQPELLAPHIAGRQVAIVSNETVAPLYLERLSKALGA----YSVLPVVLPDGEAHKNWETLQLIFDGLLTARHDRRTTVVALGGGVIGDMAGFAAACYQRGV 120          
BLAST of FC930515 vs. ExPASy Swiss-Prot
Match: AROB_PSEMY (3-dehydroquinate synthase OS=Pseudomonas mendocina (strain ymp) GN=aroB PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.607e-33
Identity = 72/121 (59.50%), Postives = 88/121 (72.73%), Query Frame = 1
Query:  124 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 486
            + V+LG+RSYPIYIGSGLL  P+LL +HV G++V VVTN TVAPLYL  +  +L   N    V  V+LPDGE +KN +TL  +FD  + +R DRR T VALGGGVIGDM G+AAA Y RGV
Sbjct:    4 LHVELGERSYPIYIGSGLLSRPELLSRHVAGRQVAVVTNETVAPLYLQTLLKSLEGFN----VATVVLPDGEAFKNWETLQLIFDGLLTARHDRRTTVVALGGGVIGDMAGFAAACYQRGV 120          
BLAST of FC930515 vs. ExPASy Swiss-Prot
Match: AROB_PSEFS (3-dehydroquinate synthase OS=Pseudomonas fluorescens (strain SBW25) GN=aroB PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.049e-32
Identity = 68/121 (56.20%), Postives = 91/121 (75.21%), Query Frame = 1
Query:  124 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 486
            ++VDLG+RSYPI+IG GLLD P+LL  H+ G++V +++N TVAPLYL+++  +L       SV +VILPDGE +KN +TL  +FD  + +R DRR T +ALGGGVIGDM G+AAA Y RGV
Sbjct:    4 LKVDLGERSYPIHIGEGLLDQPELLAPHIAGRQVAIISNETVAPLYLERLNRSLAA----YSVISVILPDGEAHKNWETLQLIFDGLLTARHDRRTTVIALGGGVIGDMAGFAAACYQRGV 120          
BLAST of FC930515 vs. ExPASy Swiss-Prot
Match: AROB_PSEU2 (3-dehydroquinate synthase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=aroB PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.790e-32
Identity = 67/121 (55.37%), Postives = 90/121 (74.38%), Query Frame = 1
Query:  124 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 486
            ++V+LG+RSYPI+IG GLLD P+LL  H+ G++V +V+N TVAPLYL+++T  L   N    V  ++LPDGE +KN +TL  +FD  + +R DRR T +ALGGGVIGDM G+AAA Y RGV
Sbjct:    4 LKVELGERSYPIHIGEGLLDQPELLTPHIVGRQVAIVSNTTVAPLYLERLTQTLAGYN----VLPIVLPDGEAFKNWETLQTIFDGLLTARHDRRTTVIALGGGVIGDMAGFAAACYQRGV 120          
The following BLAST results are available for this feature:
BLAST of FC930515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
AROB_THICR1.730e-3561.343-dehydroquinate synthase OS=Thiomicrospira crunog... [more]
AROB_PSEE44.261e-3459.503-dehydroquinate synthase OS=Pseudomonas entomophi... [more]
AROB_PSEF57.267e-3457.853-dehydroquinate synthase OS=Pseudomonas fluoresce... [more]
AROB_PSEPF9.492e-3456.203-dehydroquinate synthase OS=Pseudomonas fluoresce... [more]
AROB_PSEPW2.114e-3358.683-dehydroquinate synthase OS=Pseudomonas putida (s... [more]
AROB_PSEPK2.114e-3358.683-dehydroquinate synthase OS=Pseudomonas putida (s... [more]
AROB_PSEP12.114e-3358.683-dehydroquinate synthase OS=Pseudomonas putida (s... [more]
AROB_PSEMY3.607e-3359.503-dehydroquinate synthase OS=Pseudomonas mendocina... [more]
AROB_PSEFS1.049e-3256.203-dehydroquinate synthase OS=Pseudomonas fluoresce... [more]
AROB_PSEU21.790e-3255.373-dehydroquinate synthase OS=Pseudomonas syringae ... [more]

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Properties
Property NameValue
Genbank descriptionC34008D05EF PostHarvC1 Citrus clementina cDNA clone C34008D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930515 ID=FC930515; Name=FC930515; organism=Citrus clementina; type=EST; length=487bp
GCTTCTATTGAGTTGAAACGGAACGGCGGTTTCGTCCTGGGCCAGTATAA
GGTGAACTGCAGGATATACGCGAGTAGTGCGGCTCCGATGATGGATCAAA
CGGTTAGTAAAGCTCCTACGATTGTTGAGGTGGATTTGGGACAGCGGAGC
TACCCGATTTATATCGGATCCGGACTTCTGGATCATCCCGACCTGCTCCA
AAAGCATGTTCAAGGAAAGAAAGTTCTTGTGGTTACTAACAACACAGTTG
CACCATTGTACCTGGATAAAGTTACTGATGCTTTGACAAGAGGGAATCCA
AATGTTTCAGTTGAGAATGTGATTCTGCCAGATGGTGAGAATTACAAGAA
CATGGATACTCTCATGAAAGTCTTTGACAAGGCCATCGAGTCTCGGCTGG
ACCGGCGATGTACATTTGTTGCACTTGGAGGTGGTGTTATTGGTGACATG
TGTGGTTATGCTGCAGCCTCTTATCTTCGAGGTGTTA
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