FC930516
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930516 vs. ExPASy Swiss-Prot
Match: UFD1_DICDI (Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum GN=ufd1 PE=3 SV=1) HSP 1 Score: 232.646 bits (592), Expect = 1.341e-60 Identity = 105/190 (55.26%), Postives = 150/190 (78.95%), Query Frame = 1 Query: 94 IMAYENHHDAAFERKYRCYPISFI--DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTHCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFKE 657 +M + + +E+K++ +PISF+ +K LE+G KI++PPSAL+ L+ L+I+YPMLFE+SN +G+ +HCGV+EFIA+EG+ YLP WMM+N+ L+EG+ +++KNA+LAKG++VK+QP T +F+DISNPKAVLE +LR ++ LT D IM+ YNN KYY+ VVE KP+ A+SIIE D VDF PP+D KE Sbjct: 14 VMGHHHGGPGRYEQKFKAFPISFLPKEKHSLESGGKILLPPSALNALSRLNIQYPMLFEISNPISGKKSHCGVLEFIAEEGICYLPLWMMQNLQLKEGEFIDIKNATLAKGTFVKIQPRTSNFIDISNPKAVLENSLRKFATLTKDDEIMIDYNNTKYYLKVVELKPANAISIIEADVSVDFAPPMDSKE 203
BLAST of FC930516 vs. ExPASy Swiss-Prot
Match: UFD1_RAT (Ubiquitin fusion degradation protein 1 homolog OS=Rattus norvegicus GN=Ufd1l PE=1 SV=1) HSP 1 Score: 218.394 bits (555), Expect = 2.617e-56 Identity = 101/181 (55.80%), Postives = 138/181 (76.24%), Query Frame = 1 Query: 127 FERKYRCYPISFI----DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTHCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFKE 657 F +YRC+ +S + D+ +E G KI+MPPSALD+L+ L+I YPMLF+L+N ++ R+THCGV+EF+ADEG+ YLP+WMM+N+LL+EG +V+V++ +L +Y K QP + DFLDI+NPKAVLE LR+++CLTTGD I + YN K Y + V+ETKP AVSIIE D VDF PL +KE Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKE 199
BLAST of FC930516 vs. ExPASy Swiss-Prot
Match: UFD1_HUMAN (Ubiquitin fusion degradation protein 1 homolog OS=Homo sapiens GN=UFD1L PE=1 SV=3) HSP 1 Score: 218.394 bits (555), Expect = 2.617e-56 Identity = 101/181 (55.80%), Postives = 138/181 (76.24%), Query Frame = 1 Query: 127 FERKYRCYPISFI----DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTHCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFKE 657 F +YRC+ +S + D+ +E G KI+MPPSALD+L+ L+I YPMLF+L+N ++ R+THCGV+EF+ADEG+ YLP+WMM+N+LL+EG +V+V++ +L +Y K QP + DFLDI+NPKAVLE LR+++CLTTGD I + YN K Y + V+ETKP AVSIIE D VDF PL +KE Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKE 199
BLAST of FC930516 vs. ExPASy Swiss-Prot
Match: UFD1_MOUSE (Ubiquitin fusion degradation protein 1 homolog OS=Mus musculus GN=Ufd1l PE=1 SV=1) HSP 1 Score: 217.624 bits (553), Expect = 4.464e-56 Identity = 100/181 (55.25%), Postives = 138/181 (76.24%), Query Frame = 1 Query: 127 FERKYRCYPISFI----DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTHCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFKE 657 F +YRC+ +S + D+ +E G KI+MPPSALD+L+ L+I YPMLF+L+N ++ R+THCGV+EF+ADEG+ YLP+WMM+N+LL+EG +V+V++ +L +Y K QP + DFLDI+NPKAVLE LR+++C+TTGD I + YN K Y + V+ETKP AVSIIE D VDF PL +KE Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACMTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKE 199
BLAST of FC930516 vs. ExPASy Swiss-Prot
Match: UFD1_DROME (Ubiquitin fusion degradation protein 1 homolog OS=Drosophila melanogaster GN=Ufd1-like PE=1 SV=1) HSP 1 Score: 205.682 bits (522), Expect = 1.755e-52 Identity = 95/180 (52.78%), Postives = 130/180 (72.22%), Query Frame = 1 Query: 127 FERKYRCYPISFI---DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTHCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFKE 657 F Y+C+ +S + ++ +E G KI+MPPSALD L L++EYPMLF+L+N R +H GV+EF+ADEG YLP+WMMEN+LL EGDI+ +++ SL ++ K QPH+ DFLDI+NPKAVLE LR+++CLT GD I + YN K Y + V+ETKP AVSIIE D V+F P+ +K+ Sbjct: 17 FHANYKCFSVSMLPGNERTDVEKGGKIIMPPSALDTLTRLNVEYPMLFKLTNVKKSRSSHAGVLEFVADEGKCYLPHWMMENLLLGEGDILNIESVSLPVATFSKFQPHSTDFLDITNPKAVLENALRNFACLTRGDVIAIKYNKKVYELCVLETKPGNAVSIIECDMNVEFEAPVGYKD 196
BLAST of FC930516 vs. ExPASy Swiss-Prot
Match: UFD1_SCHPO (Ubiquitin fusion degradation protein 1 OS=Schizosaccharomyces pombe GN=ufd1 PE=2 SV=4) HSP 1 Score: 194.126 bits (492), Expect = 5.285e-49 Identity = 89/192 (46.35%), Postives = 138/192 (71.88%), Query Frame = 1 Query: 100 AYENHHDAAFERKYRCYPISFI---DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTHCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTA---VSIIETDCEVDFIPPLDFKE 657 A+ N+ + F+ +YRCYP++ I ++P++ G K+++PPSAL++L+ L++ YPMLF+ N +A + TH GV+EFIA+EG +YLPYWMM + L+ GD+V V N +A+GSYVKLQP + +FLDI++ +AVLE LR++S LT D + YN++ Y I V++ +P + VS++ETD VDF PP+ ++E Sbjct: 23 AFHNNVNQRFDTRYRCYPVAMIPGEERPNVNYGGKVILPPSALEKLSRLNVSYPMLFDFENEAAEKKTHGGVLEFIAEEGRVYLPYWMMTTLSLEPGDLVRVINTDIAQGSYVKLQPQSVNFLDITDHRAVLENALRNFSTLTKSDIFEILYNDQVYQIKVIDVQPDDSRHVVSVVETDLVVDFDPPIGYEE 214
BLAST of FC930516 vs. ExPASy Swiss-Prot
Match: UFD1_YEAST (Ubiquitin fusion degradation protein 1 OS=Saccharomyces cerevisiae GN=UFD1 PE=1 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 3.545e-45 Identity = 88/184 (47.83%), Postives = 124/184 (67.39%), Query Frame = 1 Query: 127 FERKYRCYPISFID----KPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTHCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKP---STAVSIIETDCEVDFIPPLDFKE 657 FE +RCYPI+ ++ K G KI +PPSAL +L+ L+I YPMLF+L+ GRVTH GV+EFIA+EG +YLP WMME + +Q G ++++ + + G +VKL+P + DFLDIS+PKAVLE LR++S LT D I + YN K + I ++E KP S ++ +IETD DF PP+ + E Sbjct: 21 FEEFFRCYPIAMMNDRIRKDDANFGGKIFLPPSALSKLSMLNIRYPMLFKLTANETGRVTHGGVLEFIAEEGRVYLPQWMMETLGIQPGSLLQISSTDVPLGQFVKLEPQSVDFLDISDPKAVLENVLRNFSTLTVDDVIEISYNGKTFKIKILEVKPESSSKSICVIETDLVTDFAPPVGYVE 204
BLAST of FC930516 vs. ExPASy Swiss-Prot
Match: UFD1_CAEEL (Ubiquitin fusion degradation protein 1 homolog OS=Caenorhabditis elegans GN=ufd-1 PE=1 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 6.701e-36 Identity = 74/157 (47.13%), Postives = 104/157 (66.24%), Query Frame = 1 Query: 187 GDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTHCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFKE 657 G KI++P SAL+ L +I PMLF+L+N + RVTHCGV+EF A EG LP WMM+ + L +GD + +++A+L K ++ KL+P + +FL+I+NPKAVLE LR Y+CLT D I Y + VV+ KP+ +V IIE D +DF PP + E Sbjct: 47 GGKILLPSSALNLLMQYNIPMPMLFKLTNMAVQRVTHCGVLEFSAPEGQAILPLWMMQQLGLDDGDTIRIESATLPKATFAKLKPMSLEFLNITNPKAVLEVELRKYACLTKNDRIPTSYAGQTLEFLVVDLKPANSVCIIECDVNLDFDPPEGYVE 203 The following BLAST results are available for this feature:
BLAST of FC930516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930516 ID=FC930516; Name=FC930516; organism=Citrus clementina; type=EST; length=657bpback to top |