FC930516

Overview
NameFC930516
Unique NameFC930516
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930516 vs. ExPASy Swiss-Prot
Match: UFD1_DICDI (Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum GN=ufd1 PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.341e-60
Identity = 105/190 (55.26%), Postives = 150/190 (78.95%), Query Frame = 1
Query:   94 IMAYENHHDAAFERKYRCYPISFI--DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTHCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFKE 657
            +M + +     +E+K++ +PISF+  +K  LE+G KI++PPSAL+ L+ L+I+YPMLFE+SN  +G+ +HCGV+EFIA+EG+ YLP WMM+N+ L+EG+ +++KNA+LAKG++VK+QP T +F+DISNPKAVLE +LR ++ LT  D IM+ YNN KYY+ VVE KP+ A+SIIE D  VDF PP+D KE
Sbjct:   14 VMGHHHGGPGRYEQKFKAFPISFLPKEKHSLESGGKILLPPSALNALSRLNIQYPMLFEISNPISGKKSHCGVLEFIAEEGICYLPLWMMQNLQLKEGEFIDIKNATLAKGTFVKIQPRTSNFIDISNPKAVLENSLRKFATLTKDDEIMIDYNNTKYYLKVVELKPANAISIIEADVSVDFAPPMDSKE 203          
BLAST of FC930516 vs. ExPASy Swiss-Prot
Match: UFD1_RAT (Ubiquitin fusion degradation protein 1 homolog OS=Rattus norvegicus GN=Ufd1l PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.617e-56
Identity = 101/181 (55.80%), Postives = 138/181 (76.24%), Query Frame = 1
Query:  127 FERKYRCYPISFI----DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTHCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFKE 657
            F  +YRC+ +S +    D+  +E G KI+MPPSALD+L+ L+I YPMLF+L+N ++ R+THCGV+EF+ADEG+ YLP+WMM+N+LL+EG +V+V++ +L   +Y K QP + DFLDI+NPKAVLE  LR+++CLTTGD I + YN K Y + V+ETKP  AVSIIE D  VDF  PL +KE
Sbjct:   19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKE 199          
BLAST of FC930516 vs. ExPASy Swiss-Prot
Match: UFD1_HUMAN (Ubiquitin fusion degradation protein 1 homolog OS=Homo sapiens GN=UFD1L PE=1 SV=3)

HSP 1 Score: 218.394 bits (555), Expect = 2.617e-56
Identity = 101/181 (55.80%), Postives = 138/181 (76.24%), Query Frame = 1
Query:  127 FERKYRCYPISFI----DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTHCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFKE 657
            F  +YRC+ +S +    D+  +E G KI+MPPSALD+L+ L+I YPMLF+L+N ++ R+THCGV+EF+ADEG+ YLP+WMM+N+LL+EG +V+V++ +L   +Y K QP + DFLDI+NPKAVLE  LR+++CLTTGD I + YN K Y + V+ETKP  AVSIIE D  VDF  PL +KE
Sbjct:   19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKE 199          
BLAST of FC930516 vs. ExPASy Swiss-Prot
Match: UFD1_MOUSE (Ubiquitin fusion degradation protein 1 homolog OS=Mus musculus GN=Ufd1l PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.464e-56
Identity = 100/181 (55.25%), Postives = 138/181 (76.24%), Query Frame = 1
Query:  127 FERKYRCYPISFI----DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTHCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFKE 657
            F  +YRC+ +S +    D+  +E G KI+MPPSALD+L+ L+I YPMLF+L+N ++ R+THCGV+EF+ADEG+ YLP+WMM+N+LL+EG +V+V++ +L   +Y K QP + DFLDI+NPKAVLE  LR+++C+TTGD I + YN K Y + V+ETKP  AVSIIE D  VDF  PL +KE
Sbjct:   19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACMTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKE 199          
BLAST of FC930516 vs. ExPASy Swiss-Prot
Match: UFD1_DROME (Ubiquitin fusion degradation protein 1 homolog OS=Drosophila melanogaster GN=Ufd1-like PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.755e-52
Identity = 95/180 (52.78%), Postives = 130/180 (72.22%), Query Frame = 1
Query:  127 FERKYRCYPISFI---DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTHCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFKE 657
            F   Y+C+ +S +   ++  +E G KI+MPPSALD L  L++EYPMLF+L+N    R +H GV+EF+ADEG  YLP+WMMEN+LL EGDI+ +++ SL   ++ K QPH+ DFLDI+NPKAVLE  LR+++CLT GD I + YN K Y + V+ETKP  AVSIIE D  V+F  P+ +K+
Sbjct:   17 FHANYKCFSVSMLPGNERTDVEKGGKIIMPPSALDTLTRLNVEYPMLFKLTNVKKSRSSHAGVLEFVADEGKCYLPHWMMENLLLGEGDILNIESVSLPVATFSKFQPHSTDFLDITNPKAVLENALRNFACLTRGDVIAIKYNKKVYELCVLETKPGNAVSIIECDMNVEFEAPVGYKD 196          
BLAST of FC930516 vs. ExPASy Swiss-Prot
Match: UFD1_SCHPO (Ubiquitin fusion degradation protein 1 OS=Schizosaccharomyces pombe GN=ufd1 PE=2 SV=4)

HSP 1 Score: 194.126 bits (492), Expect = 5.285e-49
Identity = 89/192 (46.35%), Postives = 138/192 (71.88%), Query Frame = 1
Query:  100 AYENHHDAAFERKYRCYPISFI---DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTHCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTA---VSIIETDCEVDFIPPLDFKE 657
            A+ N+ +  F+ +YRCYP++ I   ++P++  G K+++PPSAL++L+ L++ YPMLF+  N +A + TH GV+EFIA+EG +YLPYWMM  + L+ GD+V V N  +A+GSYVKLQP + +FLDI++ +AVLE  LR++S LT  D   + YN++ Y I V++ +P  +   VS++ETD  VDF PP+ ++E
Sbjct:   23 AFHNNVNQRFDTRYRCYPVAMIPGEERPNVNYGGKVILPPSALEKLSRLNVSYPMLFDFENEAAEKKTHGGVLEFIAEEGRVYLPYWMMTTLSLEPGDLVRVINTDIAQGSYVKLQPQSVNFLDITDHRAVLENALRNFSTLTKSDIFEILYNDQVYQIKVIDVQPDDSRHVVSVVETDLVVDFDPPIGYEE 214          
BLAST of FC930516 vs. ExPASy Swiss-Prot
Match: UFD1_YEAST (Ubiquitin fusion degradation protein 1 OS=Saccharomyces cerevisiae GN=UFD1 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.545e-45
Identity = 88/184 (47.83%), Postives = 124/184 (67.39%), Query Frame = 1
Query:  127 FERKYRCYPISFID----KPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTHCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKP---STAVSIIETDCEVDFIPPLDFKE 657
            FE  +RCYPI+ ++    K     G KI +PPSAL +L+ L+I YPMLF+L+    GRVTH GV+EFIA+EG +YLP WMME + +Q G ++++ +  +  G +VKL+P + DFLDIS+PKAVLE  LR++S LT  D I + YN K + I ++E KP   S ++ +IETD   DF PP+ + E
Sbjct:   21 FEEFFRCYPIAMMNDRIRKDDANFGGKIFLPPSALSKLSMLNIRYPMLFKLTANETGRVTHGGVLEFIAEEGRVYLPQWMMETLGIQPGSLLQISSTDVPLGQFVKLEPQSVDFLDISDPKAVLENVLRNFSTLTVDDVIEISYNGKTFKIKILEVKPESSSKSICVIETDLVTDFAPPVGYVE 204          
BLAST of FC930516 vs. ExPASy Swiss-Prot
Match: UFD1_CAEEL (Ubiquitin fusion degradation protein 1 homolog OS=Caenorhabditis elegans GN=ufd-1 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.701e-36
Identity = 74/157 (47.13%), Postives = 104/157 (66.24%), Query Frame = 1
Query:  187 GDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTHCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFKE 657
            G KI++P SAL+ L   +I  PMLF+L+N +  RVTHCGV+EF A EG   LP WMM+ + L +GD + +++A+L K ++ KL+P + +FL+I+NPKAVLE  LR Y+CLT  D I   Y  +     VV+ KP+ +V IIE D  +DF PP  + E
Sbjct:   47 GGKILLPSSALNLLMQYNIPMPMLFKLTNMAVQRVTHCGVLEFSAPEGQAILPLWMMQQLGLDDGDTIRIESATLPKATFAKLKPMSLEFLNITNPKAVLEVELRKYACLTKNDRIPTSYAGQTLEFLVVDLKPANSVCIIECDVNLDFDPPEGYVE 203          
The following BLAST results are available for this feature:
BLAST of FC930516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
UFD1_DICDI1.341e-6055.26Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_RAT2.617e-5655.80Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_HUMAN2.617e-5655.80Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_MOUSE4.464e-5655.25Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_DROME1.755e-5252.78Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_SCHPO5.285e-4946.35Ubiquitin fusion degradation protein 1 OS=Schizosa... [more]
UFD1_YEAST3.545e-4547.83Ubiquitin fusion degradation protein 1 OS=Saccharo... [more]
UFD1_CAEEL6.701e-3647.13Ubiquitin fusion degradation protein 1 homolog OS=... [more]
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Properties
Property NameValue
Genbank descriptionC34008D06EF PostHarvC1 Citrus clementina cDNA clone C34008D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930516 ID=FC930516; Name=FC930516; organism=Citrus clementina; type=EST; length=657bp
GAAATTTCCTTTGAAGTTGCCAACTTTTTAATTTTTTTCAAATTTCAAAG
ATTTTCAAAGTCCTCAAGTGGGTATTAGCTCTCTGACTCGGTGATCATGG
CTTATGAAAACCATCACGATGCAGCATTTGAAAGAAAGTACCGTTGTTAT
CCTATTTCTTTCATTGATAAGCCACATCTGGAAAATGGTGATAAAATTGT
CATGCCACCGTCAGCTCTTGATCGCCTCGCCTATTTGCATATTGAGTATC
CTATGTTGTTTGAATTGAGTAATACTTCTGCTGGACGGGTCACTCATTGT
GGAGTCATGGAGTTCATTGCAGATGAGGGTCTGATTTACTTGCCATACTG
GATGATGGAAAACATGCTACTACAAGAGGGAGATATTGTGGAAGTTAAGA
ATGCCAGCCTAGCAAAGGGATCTTATGTGAAACTGCAGCCTCACACAAAG
GATTTTTTAGACATCTCCAATCCAAAAGCCGTCTTGGAGACTACATTGAG
AAGCTACTCTTGCTTAACCACTGGTGACACTATCATGGTTCCTTATAACA
ATAAGAAGTATTACATTAATGTAGTCGAAACAAAGCCATCCACGGCTGTC
AGTATAATTGAAACAGACTGTGAGGTGGACTTTATCCCTCCTCTTGATTT
TAAAGAA
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