FC930517

Overview
NameFC930517
Unique NameFC930517
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930517_ssr38 microsatellite FC930517_ssr38:38..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC930517 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.693e-25
Identity = 59/180 (32.78%), Postives = 100/180 (55.56%), Query Frame = 3
Query:  180 IAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPLISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAI 719
            ++   + V++  Y+L  V++M  GHLG L L+  ++A        + ++LGMASA++T+CGQAYGA+QY  +G     A+         L+FL+ Y+G +L  +GQ   I+HE   F   ++P ++A+A   P+ R+ Q+Q+++ P+   S     LH  + W +      G LG AL +
Sbjct:   58 LSGASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALIL 237          
BLAST of FC930517 vs. ExPASy Swiss-Prot
Match: S47A2_MOUSE (Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 65/195 (33.33%), Postives = 110/195 (56.41%), Query Frame = 3
Query:  144 GVLSGEVKKQGY----IAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPLISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALA 716
            G LS +V+++      +A P+    L  +L+ +VS +  GHLG++ L +  +A+S+ +VTG SV  G+ASA +TL  Q++G +  +R+G      I  L L CFP   +++   +LL+L+ QDP ++     +++  +PAL A    Q   RY QSQ +I+P  +   AA  +++ +   L+Y   LG +G A A
Sbjct:   34 GALSPDVRREAAALVALAGPVFLAQLMIFLISIVSSIFCGHLGKVELDAVTLAVSVVNVTGISVGTGLASACDTLMSQSFGGKNLKRVGVILQRGILILLLCCFPCWAIFLNTERLLLLLRQDPDVARLAQVYVMICIPALPAAFLFQLQTRYLQSQGIIMPQVIVGIAANVVNVGMNAFLLYALDLGVVGSAWA 228          
BLAST of FC930517 vs. ExPASy Swiss-Prot
Match: S47A1_XENTR (Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.992e-22
Identity = 61/179 (34.08%), Postives = 95/179 (53.07%), Query Frame = 3
Query:  180 IAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPLISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALA 716
            +AAP     L  +L+ +VS +  GHLG++ L + ++AI++ ++TG +V  G+A A +TL  Q +G    + +G      I  L L CFP   L I    +L+L  QDP +S     +++  LPAL A    Q L +Y Q+Q +I P  L+   A   +    + L+Y  GLG +G A A
Sbjct:   55 LAAPAFLSQLMIFLISIVSSIFCGHLGKVELDAVSLAITIINITGVAVGTGLAGACDTLISQTFGGSNLKLVGIILQRGILILLLFCFPCWALLINTESILLLFRQDPEVSKLTQIYVLIFLPALPAAFLYQLLAKYLQNQGIIYPQVLTGFIANIFNALFNYILLYVLGLGVMGSACA 233          
BLAST of FC930517 vs. ExPASy Swiss-Prot
Match: YL47_SCHPO (Uncharacterized transporter C323.07c OS=Schizosaccharomyces pombe GN=SPAC323.07c PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.515e-22
Identity = 57/206 (27.67%), Postives = 113/206 (54.85%), Query Frame = 3
Query:  108 PKESLSSSSTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPLISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKS--GLGNLGGALAI 719
            P ES + +++ + V+  E+ +   + +P V   L Q   Q  ++  +GHLG+  L++++++   A+++ FS+  G+ S+L+TL  QA+GA +   +       +  L ++  P++ +W+    +L+ + QDP+++H  G++M   + A   YA  + L RY Q+Q +  P+    C A  L+I + + LV+    G G LG  +A+
Sbjct:   73 PGESFADNASGYPVIKHELSELLRLGSPTVIAYLLQSSEQFSTVFTLGHLGKEYLAASSLSTMTAAISAFSIFQGVISSLDTLATQAFGANKPYNVAIYLQRCLLILAVLHIPVALIWLNLEHILIFLHQDPMVAHLCGRYMRVFILAAPGYAVFEALKRYLQAQGIFTPITYVLCFAAPLNILLNYLLVWHPTIGFGFLGAPVAV 278          
BLAST of FC930517 vs. ExPASy Swiss-Prot
Match: S47A1_MOUSE (Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.515e-22
Identity = 57/179 (31.84%), Postives = 96/179 (53.63%), Query Frame = 3
Query:  180 IAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPLISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALA 716
            +A P     L  +L+  +S +  GHLG+L L +  +AI++ +VTG SV  G++SA +TL  Q YG+Q  + +G         L L CFP   L+I   ++L+L  QDP +S     +++  +PAL A       ++Y  +Q +++P  ++  AA  ++    +  +Y   LG +G ALA
Sbjct:   41 LAGPAFLAQLMMFLISFISSVFCGHLGKLELDAVTLAIAVINVTGISVGHGLSSACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQILLLFRQDPDVSRLTQTYVMIFIPALPAAFLYTLQVKYLLNQGIVLPQIMTGIAANLVNALANYVFLYHLHLGVMGSALA 219          
BLAST of FC930517 vs. ExPASy Swiss-Prot
Match: S47A1_RAT (Multidrug and toxin extrusion protein 1 OS=Rattus norvegicus GN=Slc47a1 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21
Identity = 60/193 (31.09%), Postives = 104/193 (53.89%), Query Frame = 3
Query:  147 VLSG---EVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPLISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALA 716
            +LSG   E++    +A P     L  +L+  +S +  GHLG+L L +  +AI++ +VTG SV  G++SA +TL  Q YG+Q  + +G         L L CFP   L+I   ++L+L  QDP +S     +++  +PAL A       ++Y  +Q +++P  ++  AA  ++    +  +++  LG +G ALA
Sbjct:   26 LLSGFQEELRALLVLAGPAFLAQLMMFLISFISSVFCGHLGKLELDAVTLAIAVINVTGISVGHGLSSACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQILLLFRQDPDVSRLTQTYVMVFIPALPAAFLYTLQVKYLLNQGIVLPQVITGIAANLVNALANYLFLHQLHLGVMGSALA 218          
BLAST of FC930517 vs. ExPASy Swiss-Prot
Match: S47A1_PONAB (Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21
Identity = 56/179 (31.28%), Postives = 97/179 (54.19%), Query Frame = 3
Query:  180 IAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPLISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALA 716
            +A P   V L  +L+  +S +  GHLG+L L +  +AI++ +VTG SV  G++SA +TL  Q YG+Q  + +G     +   L L CFP   L++    +L+L  QDP +S     ++   +PAL A       ++Y  +Q +++P  ++  AA  ++    +  +++  LG +G ALA
Sbjct:   41 LAGPAFLVQLMVFLISFISSVFCGHLGKLELDAVTLAIAVINVTGVSVGFGLSSACDTLISQTYGSQNLKHVGVILQRSALILLLCCFPCWALFLNTQHILLLFRQDPDVSRLTQTYVTIFIPALPATFLYMLQVKYLLNQGIVLPQIVTGVAANLVNALANYLFLHQLHLGAIGSALA 219          
BLAST of FC930517 vs. ExPASy Swiss-Prot
Match: S47A1_HUMAN (Multidrug and toxin extrusion protein 1 OS=Homo sapiens GN=SLC47A1 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.477e-21
Identity = 56/179 (31.28%), Postives = 97/179 (54.19%), Query Frame = 3
Query:  180 IAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPLISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALA 716
            +A P   V L  +L+  +S +  GHLG+L L +  +AI++ +VTG SV  G++SA +TL  Q YG+Q  + +G     +   L L CFP   L++    +L+L  QDP +S     ++   +PAL A       ++Y  +Q +++P  ++  AA  ++    +  +++  LG +G ALA
Sbjct:   41 LAGPAFLVQLMVFLISFISSVFCGHLGKLELDAVTLAIAVINVTGVSVGFGLSSACDTLISQTYGSQNLKHVGVILQRSALVLLLCCFPCWALFLNTQHILLLFRQDPDVSRLTQTYVTIFIPALPATFLYMLQVKYLLNQGIVLPQIVTGVAANLVNALANYLFLHQLHLGVIGSALA 219          
BLAST of FC930517 vs. ExPASy Swiss-Prot
Match: S47A1_RABIT (Multidrug and toxin extrusion protein 1 OS=Oryctolagus cuniculus GN=SLC47A1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.319e-19
Identity = 54/179 (30.17%), Postives = 93/179 (51.96%), Query Frame = 3
Query:  180 IAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPLISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALA 716
            +A P     L  +L+  VS +  GHL +L L++  +AI++ +V G SV  G++SA +TL  Q YG++  + +G         L L C P   L++    +L+L  QDP +S     ++   +PAL A       ++Y  +Q +++P  ++  AA  ++    +  VY+  LG +G ALA
Sbjct:   40 LACPAFLAQLMVFLISFVSSVFCGHLSKLELNAVTLAIAVINVMGVSVGFGLSSACDTLISQTYGSRNLKHVGVILQRGSLILLLCCLPCWALFLNTQHILLLFRQDPAVSRLTQTYVTIFIPALPATFLYTLQVKYLLNQGIVLPQVVTGVAANLVNALANYLFVYQLHLGVMGSALA 218          
BLAST of FC930517 vs. ExPASy Swiss-Prot
Match: S47A1_DANRE (Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.811e-19
Identity = 58/179 (32.40%), Postives = 92/179 (51.40%), Query Frame = 3
Query:  180 IAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPLISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALA 716
            +A P+    L  +L+  VS +  GHLG+  L+  A+AI++ +VTG S+  G+ASA +TL  Q +G+   +R+G      I  L L CFP   L I    +L+ + Q P ++     ++   +PAL A    Q   RY Q+Q +I P  ++  A   L+  I +  ++   LG  G A A
Sbjct:   59 LAGPVFISQLMIFLISFVSTVFCGHLGKTELAGVALAIAVINVTGISIGSGLASACDTLISQTFGSNNLKRVGVILQRGILILLLACFPCWALLINTEPILLAVRQSPNVASLSQLYVKIFMPALPAAFMYQLQGRYLQNQGIIWPQVITGAAGNILNALINYVFLHLLELGVAGSAAA 237          
The following BLAST results are available for this feature:
BLAST of FC930517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
TT12_ARATH3.693e-2532.78Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
S47A2_MOUSE8.228e-2533.33Multidrug and toxin extrusion protein 2 OS=Mus mus... [more]
S47A1_XENTR4.992e-2234.08Multidrug and toxin extrusion protein 1 OS=Xenopus... [more]
YL47_SCHPO8.515e-2227.67Uncharacterized transporter C323.07c OS=Schizosacc... [more]
S47A1_MOUSE8.515e-2231.84Multidrug and toxin extrusion protein 1 OS=Mus mus... [more]
S47A1_RAT1.897e-2131.09Multidrug and toxin extrusion protein 1 OS=Rattus ... [more]
S47A1_PONAB1.897e-2131.28Multidrug and toxin extrusion protein 1 OS=Pongo a... [more]
S47A1_HUMAN2.477e-2131.28Multidrug and toxin extrusion protein 1 OS=Homo sa... [more]
S47A1_RABIT2.319e-1930.17Multidrug and toxin extrusion protein 1 OS=Oryctol... [more]
S47A1_DANRE8.811e-1932.40Multidrug and toxin extrusion protein 1 OS=Danio r... [more]

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Properties
Property NameValue
Genbank descriptionC34008D07EF PostHarvC1 Citrus clementina cDNA clone C34008D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930517 ID=FC930517; Name=FC930517; organism=Citrus clementina; type=EST; length=722bp
GAAACAAGTCTCCCTCTTAAGTCTTCGCAAATTTTACAGAGAGAGAGAGA
GGGGCGGCCATGAGAGGCAACGAAACAGAAAAGAATATGGAAGAGAGTTT
ATTAATACCAAAAGAGAGTTTATCCTCATCATCTACAACATGGGGTGTGT
TGAGTGGAGAAGTGAAAAAGCAGGGTTACATAGCAGCACCAATGGTGGCT
GTCACTTTATCACAGTACCTGCTTCAAGTTGTTTCCATGATGATGGTTGG
TCATCTTGGTCAACTTGCTCTTTCTAGCACCGCCATGGCCATCTCTCTGG
CTAGCGTCACTGGCTTCAGTGTCCTTTTAGGAATGGCAAGTGCACTGGAA
ACATTATGTGGGCAAGCGTATGGAGCTCAGCAATATCAACGAATTGGAAC
TCAAACTTACACTGCAATATTTTGTTTATTCTTAGTTTGCTTTCCACTTT
CCTTTCTATGGATTTACGCGGGAAAACTGCTAGTTTTGATAGGCCAAGAC
CCCCTGATTTCACATGAAGTAGGCAAGTTTATGATCTGGCTTCTTCCAGC
TCTGTTCGCTTATGCAACAATGCAGCCGCTTATTCGATATTTTCAGTCTC
AAAGTTTGATCATTCCCATGTTCTTAAGCTCCTGTGCTGCTCTTTGTTTG
CATATTCCCATCTGTTGGAGTTTGGTATACAAGTCTGGACTAGGGAACCT
CGGAGGAGCATTGGCAATTGAA
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