FC930521

Overview
NameFC930521
Unique NameFC930521
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930521_ssr2 microsatellite FC930521_ssr2:2..13. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930521_ssr228 microsatellite FC930521_ssr228:228..239. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930521_ssr408 microsatellite FC930521_ssr408:408..419. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5602 contig Ccv1_Contig5602:19..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930521 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 36/83 (43.37%), Postives = 53/83 (63.86%), Query Frame = 3
Query:  450 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD--QPFRLNWXTF 689
            ++W+GDL  +MDEN++   FA+ GE + S+K+IRN+ TG+  GY FVEF   ATAEK L       +P     + F+LN+ T+
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATY 86          
BLAST of FC930521 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 36/83 (43.37%), Postives = 53/83 (63.86%), Query Frame = 3
Query:  450 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD--QPFRLNWXTF 689
            ++W+GDL  +MDEN++   FA+ GE + S+K+IRN+ TG+  GY FVEF   ATAEK L       +P     + F+LN+ T+
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTY 86          
BLAST of FC930521 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 36/83 (43.37%), Postives = 53/83 (63.86%), Query Frame = 3
Query:  450 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD--QPFRLNWXTF 689
            ++W+GDL  +MDEN++   FA+ GE + S+K+IRN+ TG+  GY FVEF   ATAEK L       +P     + F+LN+ T+
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATY 86          
BLAST of FC930521 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 36/83 (43.37%), Postives = 53/83 (63.86%), Query Frame = 3
Query:  450 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD--QPFRLNWXTF 689
            ++W+GDL  +MDEN++   FA+ GE + S+K+IRN+ TG+  GY FVEF   ATAEK L       +P     + F+LN+ T+
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATY 86          
BLAST of FC930521 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 36/83 (43.37%), Postives = 53/83 (63.86%), Query Frame = 3
Query:  450 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD--QPFRLNWXTF 689
            ++W+GDL  +MDEN++   FA+ GE + S+K+IRN+ TG+  GY FVEF   ATAEK L       +P     + F+LN+ T+
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATY 86          
BLAST of FC930521 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 32/89 (35.96%), Postives = 50/89 (56.18%), Query Frame = 3
Query:  426 GSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSE--GYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWXT 686
            G G   + T+W+GDL  WMD  ++   +AS  E  ++KV+R+K +       Y FV+F + A AE+ L  Y + ++P     F+LNW T
Sbjct:   78 GVGSKMSDTLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWAT 166          
The following BLAST results are available for this feature:
BLAST of FC930521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TSAP1_RAT5.947e-1243.37tRNA selenocysteine 1-associated protein 1 OS=Ratt... [more]
TSAP1_PONAB5.947e-1243.37tRNA selenocysteine 1-associated protein 1 OS=Pong... [more]
TSAP1_MOUSE5.947e-1243.37tRNA selenocysteine 1-associated protein 1 OS=Mus ... [more]
TSAP1_HUMAN5.947e-1243.37tRNA selenocysteine 1-associated protein 1 OS=Homo... [more]
TSAP1_BOVIN5.947e-1243.37tRNA selenocysteine 1-associated protein 1 OS=Bos ... [more]
CSX1_SCHPO2.951e-1135.96RNA-binding post-transcriptional regulator csx1 OS... [more]
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Properties
Property NameValue
Genbank descriptionC34008D11EF PostHarvC1 Citrus clementina cDNA clone C34008D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930521 ID=FC930521; Name=FC930521; organism=Citrus clementina; type=EST; length=708bp
GCTCTCTCTCTCTCCCTCTCTCCCTCTTTGTTGAAATCTCTCAGATTCAT
CGTTTTCTCTCTCTTAACAACAACTCAGATTCATTAATTATATTTTGTTA
CATTTGTTTGTAACCCTATCCCTGAATCTTTCCATTTTCATTTTATTTTT
AATAAAGAAGAGGAAGATAAATGAATAAGATGCAATCAAGCGGCTCTGAT
TCATCGCAGGACCAGCAGAATCAACGGCAACAACAACAACAGCCGCCGCC
TCCTCAGCAGCAACCTTGGATGGCGATGCAGTATCCAGCGGCGGCGATGG
TAATGCCTCACCAAATGATGCCACCTCAACATTATCCGATACCGCCACCT
CCCTATATGCCGTATCACCAATACCAGCATCACCACCAGCCGCATCTACA
GCACCAACAGCAGCAGCAGCATCAAGGATCTGGCGGTGGTGAGAATAAGA
CTATCTGGGTCGGTGATTTGCATCATTGGATGGACGAGAACTACCTTCAT
AGCTGTTTTGCTTCCACTGGAGAGATTGCCTCCATTAAGGTTATTCGCAA
TAAGCAGACAGGATTGTCAGAAGGTTATGGATTTGTGGAATTTTTTACCC
ATGCAACAGCTGAGAAAGTTCTGCAGAGCTATACTAGCATTCTGATGCCC
AACACAGATCAGCCTTTCCGCCTGAACTGGGNCACATTTAGTACGGGTGA
ACAGCGCT
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