FC930522

Overview
NameFC930522
Unique NameFC930522
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length583
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15167 contig Ccv1_Contig15167:1..585. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930522 vs. ExPASy Swiss-Prot
Match: AMYB_IPOBA (Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4)

HSP 1 Score: 75.485 bits (184), Expect = 2.163e-13
Identity = 43/99 (43.43%), Postives = 62/99 (62.63%), Query Frame = 1
Query:    1 DHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQIL---RAASLDVD----KQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKD 276
            D EQP +A  AP++LV+QV S+  K ++ +AGENALPRYD  A+ Q+L   R   ++++     +M   TYLR++  L Q DN+  F  FVKKM+   D
Sbjct:  351 DSEQPAEAKSAPQELVQQVLSSGWKEYIDVAGENALPRYDATAYNQMLLNVRPNGVNLNGPPKLKMSGLTYLRLSDDLLQTDNFELFKKFVKKMHADLD 449          
BLAST of FC930522 vs. ExPASy Swiss-Prot
Match: AMYB_MAIZE (Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.025e-11
Identity = 47/131 (35.88%), Postives = 69/131 (52.67%), Query Frame = 1
Query:    1 DHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAA-------SLDVDKQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKDVHRCLEQV--------EREAEHFVHVTQPLVQ 348
            D EQ  +A  APE+LV+QV SA  +  + LA ENAL RYD  A+  ILR A       +   + ++  FTYLR++  LFQ  N+  F  FV++M+   D +  ++ V        E   E  + V QP ++
Sbjct:  346 DSEQSSEAKSAPEELVQQVLSAGWREGLNLACENALNRYDATAYNTILRNARPQGINKNGPPEHKLHGFTYLRVSDELFQEQNYTTFKTFVRRMHANLDYNPNVDPVAPLERSKAEIPIEEILEVAQPKLE 476          
BLAST of FC930522 vs. ExPASy Swiss-Prot
Match: AMYB_SOYBN (Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.644e-11
Identity = 42/99 (42.42%), Postives = 55/99 (55.56%), Query Frame = 1
Query:    1 DHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQ-ILRAASLDVDK------QMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKD 276
            D EQP DA   P++LV+QV S   +  + +AGENALPRYD  A+ Q IL A    V+        M   TYLR++  L Q  N+  F  FV KM+  +D
Sbjct:  349 DSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHADQD 447          
The following BLAST results are available for this feature:
BLAST of FC930522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AMYB_IPOBA2.163e-1343.43Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4[more]
AMYB_MAIZE2.025e-1135.88Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1[more]
AMYB_SOYBN2.644e-1142.42Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3[more]
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Properties
Property NameValue
Genbank descriptionC34008D12EF PostHarvC1 Citrus clementina cDNA clone C34008D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930522 ID=FC930522; Name=FC930522; organism=Citrus clementina; type=EST; length=583bp
GATCATGAACAACCACAAGATGCCCTTTGTGCACCTGAGAAGCTAGTCAA
GCAAGTGGCTTCAGCAACTCAGAAAGCACACGTTCCACTGGCTGGGGAAA
ATGCGTTGCCACGTTATGATGAATACGCTCACGAGCAGATCTTGCGAGCA
GCATCACTTGATGTAGACAAACAGATGTGTGCATTCACGTACTTGAGGAT
GAATCCACATTTATTCCAACCCGATAATTGGAGACAGTTTGTGGCATTTG
TGAAGAAGATGAATGAAGGGAAGGATGTTCACCGGTGTTTGGAGCAAGTG
GAGCGCGAAGCTGAGCACTTCGTCCATGTGACCCAGCCATTGGTGCAAGA
GGCTGCCGTGGCCCTTATGCACTAAAAGGCTATGTTTTGTTTTGTTACGA
CATGCCTTGTTGCAAGTTTTCTTTCAAGTTAGAAAAAATGACTAGGTCCC
TCATTTTGCTATGGCTCTTTTTATTATGCTGTAGCTTTTTAAAATGTTAA
GTCACTTATATACATATGTATTGTTTCTATAAACACGTTAAACCAGATGT
AATGTAATAAAACAAATTTATTCAGCTAAAAAA
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