FC930532

Overview
NameFC930532
Unique NameFC930532
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930532 vs. ExPASy Swiss-Prot
Match: EIF2A_SCHPO (Eukaryotic translation initiation factor 2A OS=Schizosaccharomyces pombe GN=SPBC4B4.04 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.849e-46
Identity = 90/231 (38.96%), Postives = 147/231 (63.64%), Query Frame = 2
Query:    5 TPQEKNVILWETETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNLGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKENFML 697
            TP++ N+ +W TETG+ V+   Q+N  +T W +++++ DE++A R+ TNE+ F++T +  KG + +LRV G++ F +S      VAVF+PE KG+PASV+ Y+      + PL++++FF+   VQ  WN   T LL + Q++VDK+N++YYGE+ L  L   G  +  V L +EGP+HDV W+    EF +VYG+MPA   IF+ +   +  +   P NT+ ++P   ++L
Sbjct:  101 TPKQ-NMKVWNTETGQLVFSFVQRN--QTGW-NLQYTCDESLAARLVTNEVHFYETGNMSKGPIAKLRVEGISDFALSPGQNHAVAVFIPEKKGAPASVRTYSIPNF--NSPLSQKTFFKADKVQFKWNALGTSLLVLTQTEVDKSNKNYYGETNLYLLGITGQFDCRVDLDREGPIHDVCWNADSKEFGIVYGYMPAKTAIFDNRANVVSIIPPAPRNTLIFSPNSRYIL 325          
BLAST of FC930532 vs. ExPASy Swiss-Prot
Match: EIF2A_DANRE (Eukaryotic translation initiation factor 2A OS=Danio rerio GN=eif2a PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.113e-41
Identity = 94/233 (40.34%), Postives = 143/233 (61.37%), Query Frame = 2
Query:   14 EKNVILWETETGEAVYQLFQKNMTKTTW-PSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSH---VAVFVPESKGSPASVQIYACGK-DLQSQPLARRSFFRCSTVQLNWNLGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKENFML 697
            E N+ LW+ +TG  +   +QK MT   W PS  ++ DE+++ R   NE+ FF+  +F + I  +L +  V+ F +S  PGS    VAV+VP SKG+P+ V++Y        +  LA +SFF+   V + WN  +T +L  A ++VDKT  SYYGE  L+Y+ T+G    +V L K GP++DV WS + +EF VVYGFMPA AT+FN KC  + + G+GP N   ++P+ + ++
Sbjct:  105 EANLQLWDLQTGACMKAFYQKKMTG--WCPS--WADDESISVRNVNNELHFFENNNF-ETIANKLHLQKVSEFALS--PGSQPSKVAVYVPGSKGAPSFVRLYQYPNFGGPTCALANKSFFKADKVNMLWNKKATAVLVTASTEVDKTGASYYGEQTLHYVATNG-ESAVVQLPKNGPIYDVSWSPNSTEFCVVYGFMPAKATVFNNKCESVFDFGTGPRNAAFYSPQGHILV 329          
BLAST of FC930532 vs. ExPASy Swiss-Prot
Match: EIF2A_HUMAN (Eukaryotic translation initiation factor 2A OS=Homo sapiens GN=EIF2A PE=1 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 1.159e-39
Identity = 91/229 (39.74%), Postives = 134/229 (58.52%), Query Frame = 2
Query:   20 NVILWETETGEAVYQLFQKNMTKTTW-PSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSH-VAVFVPESKGSPASVQIYACGKDLQSQP-LARRSFFRCSTVQLNWNLGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKENFML 697
            N+ L++ +TG  +    QK M    W PS  +S DE +  R   NE+ FF+  +F   I  +L +  +  F +S  P  + VAV+VP SKG+P+ V++Y           LA +SFF+   V + WN  +T +L +A +DVDKT  SYYGE  L+Y+ T+G    +V L K GP++DV W+ S +EF  VYGFMPA ATIFN KC P+ + G+GP N   ++P  + ++
Sbjct:  108 NLQLYDVKTGTCLKSFIQKKMQN--WCPS--WSEDETLCARNVNNEVHFFENNNF-NTIANKLHLQKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFAGPHAALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIATNG-ESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDPVFDFGTGPRNAAYYSPHGHILV 330          
BLAST of FC930532 vs. ExPASy Swiss-Prot
Match: EIF2A_MOUSE (Eukaryotic translation initiation factor 2A OS=Mus musculus GN=Eif2a PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.373e-39
Identity = 92/231 (39.83%), Postives = 136/231 (58.87%), Query Frame = 2
Query:   20 NVILWETETGEAVYQLFQKNMTKTTW-PSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSH---VAVFVPESKGSPASVQIYACGKDLQSQP-LARRSFFRCSTVQLNWNLGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKENFML 697
            N+ L++ +TG  +    QK M    W PS  +S DE +  R   NE+ FF+  +F   I  +L +  V  F +S  PG+    VAV+VP SKG+P+ V++Y        Q  LA +SFF+   V + WN  +T +L +A ++VDKT  SYYGE  L+Y+ T+G    +V L K GP++DV W+ S +EF  VYGFMPA AT+FN KC P+ + G+GP N   ++P  + ++
Sbjct:  108 NLQLYDMKTGACLKSFIQKKMQN--WCPS--WSDDEIICARNVNNEVHFFENNNF-NTIANKLHLQKVNDFNLS--PGTQPYKVAVYVPGSKGAPSFVRLYQYPNFAGPQAALANKSFFKADKVTMLWNKKATAVLVIASTEVDKTGASYYGEQTLHYIATNG-ESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATVFNLKCDPVFDFGTGPRNAAFYSPHGHILV 330          
BLAST of FC930532 vs. ExPASy Swiss-Prot
Match: EIF2A_XENLA (Eukaryotic translation initiation factor 2A OS=Xenopus laevis GN=eif2a PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.282e-38
Identity = 92/232 (39.66%), Postives = 137/232 (59.05%), Query Frame = 2
Query:   20 NVILWETETGEA--VYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSH---VAVFVPESKGSPASVQIYACGK-DLQSQPLARRSFFRCSTVQLNWNLGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKENFML 697
            N+ L++ ++G+   V    QK M    W S  +S DE +  R   NE+ FF+  +F   I  +L +  V+ FE+S  PG     VAV+VP SKG+P+ V++Y        +  LA +SFF+   V + WN  +T +L  A +DVDKT  SYYGE  L+Y+  +G    +V L K GP++DV W+ + +EF VVYGFMPA AT+FN KC PI + G+GP N   ++P+ + ++
Sbjct:  108 NLQLYDLKSGKISNVKSFIQKKMEN--W-SPHWSDDENICARNVNNEVHFFENNNFDT-IANKLHLQKVSDFELS--PGEQPCKVAVYVPGSKGAPSFVRLYQYPNFSGPNSALANKSFFKADRVAMLWNSKATAVLVTASTDVDKTGASYYGEQTLHYIAVNG-ESAVVQLPKNGPIYDVTWNKNATEFCVVYGFMPAKATVFNLKCDPIFDFGTGPRNAAFYSPQGHILV 332          
BLAST of FC930532 vs. ExPASy Swiss-Prot
Match: EIF2A_CHICK (Eukaryotic translation initiation factor 2A OS=Gallus gallus GN=EIF2A PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.674e-38
Identity = 88/228 (38.60%), Postives = 134/228 (58.77%), Query Frame = 2
Query:   20 NVILWETETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSK-APGSHVAVFVPESKGSPASVQIYACGKDLQSQP-LARRSFFRCSTVQLNWNLGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKENFML 697
            N+ L++ +TG+ +    QK M    W    ++ DE++  R   NE+ FF+  +F   I  +L +  V  F +S  A  + VAV+VP SKG+P+ V++Y        Q  LA +SFF+   V + WN  +T +L +A +DVDKT  SYYGE  L+Y+ T+G    +V L K GP++DV W+ +  EF  VYGFMPA AT+FN KC P+ + G+GP N   ++P  + ++
Sbjct:  108 NLQLYDVKTGKCLKSFIQKKMQN--WCPC-WADDESICARNVNNEVHFFENNNF-NTIANKLHLQKVNDFVLSPGAQPTKVAVYVPGSKGAPSFVRLYQYPNFGGPQSALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIATNG-ESAIVQLPKNGPIYDVVWNPNSVEFCAVYGFMPAKATVFNLKCDPVFDFGTGPRNAAYYSPHGHILV 330          
BLAST of FC930532 vs. ExPASy Swiss-Prot
Match: EIF2A_DICDI (Eukaryotic translation initiation factor 2A OS=Dictyostelium discoideum GN=eif2a PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.506e-34
Identity = 75/226 (33.19%), Postives = 130/226 (57.52%), Query Frame = 2
Query:   14 EKNVILWETETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYR-LRVPGVAAFEVSKAPGS---HVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNLGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNP 679
            E N+I+W+ +    +Y+  QK   +  WP I+++ DE +A ++ +NE+ FF+      G+L + +++  +++FE + A       +A FVPE   +P S +IY+      ++  +   FF+ S  ++ WN     +L    +D DK+ +SYYGE+ L +L+ DG+   L     +GP+HDVQWS +  +F V YG MP+  T+FN K  P+++ G  P NT+R++P
Sbjct:  145 ENNLIVWDIKQASILYKTSQKYCNQENWPLIKWTDDEVLAGKLISNEVHFFNGRSI--GVLAKKIKLQDISSFEFAPATNGGPYKIATFVPEKGSTPGSARIYSY--PTVNEYCSHLKFFKASEAKVLWNKKGNAILVHTFTDTDKSGKSYYGETGLWFLSQDGSSFNL---NIKGPIHDVQWSPTLDQFMVCYGNMPSQTTLFNLKGEPLVDFGLNPRNTIRFSP 363          
BLAST of FC930532 vs. ExPASy Swiss-Prot
Match: EIF2A_DROME (Eukaryotic translation initiation factor 2A OS=Drosophila melanogaster GN=CG7414 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.718e-33
Identity = 83/231 (35.93%), Postives = 131/231 (56.71%), Query Frame = 2
Query:   20 NVILWETETGEAVYQLFQKNMTKTTW-PSIRFSSDEAVACRMATNEIQFFDTTD-FPKGILYRLR-VPGVAAFEVSKAPGS---HVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNLGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKENFM 694
            N++++E  TG  V+ + QKN  +  W PS  +S+DE++   +   E  F+D  +   KG     R + G     +S  PG+    +A + P +KG+P+  ++Y      Q+Q +A +SFF+   V++ WN   +GLL +  ++VDK+  SYYG   ++++ T G     VPL KEGPVH V+WS   +EF VVYGFMP+ A ++N KC  + + G GP N   +NP  N +
Sbjct:  120 NLLVYEVATGVEVFAIVQKN--QADWQPS--WSADESIFALVVGGEALFYDLGEGAEKGFATTSRKIGGSRGGMLSLGPGNCPPFLAFYTPGAKGAPSMCKLYKYPALGQNQTVACKSFFQADRVEMLWNKRGSGLLLLTSTEVDKSGASYYGNQAVHFMATKGDTCS-VPLSKEGPVHCVKWSPKATEFVVVYGFMPSKAALYNLKCDVVFDFGEGPRNCAYFNPFGNLI 345          
BLAST of FC930532 vs. ExPASy Swiss-Prot
Match: EIF2A_CAEEL (Eukaryotic translation initiation factor 2A OS=Caenorhabditis elegans GN=E04D5.1 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.285e-30
Identity = 72/198 (36.36%), Postives = 109/198 (55.05%), Query Frame = 2
Query:  107 RFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPG-SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNLGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKENFML 697
            +FS DE++A RM  +E+ F+    F +   ++L   G   F +S  P  +HVAV+VP    +PA V+++   +      +  R+FF+     + WN     LL +A  +VDKTNQSYYGE  L  +        +VPL K+GP++  +W+ +G EFAV YG+MPA  T +N +  PI +   GP N V +N   N +L
Sbjct:  139 QFSDDESLAARMVGSEVFFYTNMSFDR-YDHKLVEKGATNFALSPGPAPNHVAVYVPAVGSTPARVRVHRVSESFPV--VGNRTFFKSDKAVMTWNQRGQSLLILASVEVDKTNQSYYGEQSLYLINIQSGESVVVPLEKKGPIYAAKWNPNGREFAVCYGYMPAKVTFYNPRGVPIFDTIEGPRNDVFYNAFGNIVL 333          
BLAST of FC930532 vs. ExPASy Swiss-Prot
Match: EIF2A_YEAST (Eukaryotic translation initiation factor 2A OS=Saccharomyces cerevisiae GN=YGR054W PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.614e-19
Identity = 52/161 (32.30%), Postives = 87/161 (54.04%), Query Frame = 2
Query:  233 VSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNLGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL------VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKENFML 697
            +S A    +  F PE  G PA + I+A  +   ++ +A ++FF+  + QL WN     +L +A +D D +N+SYYGE+ L  L+  G +  L      V L   GPVHD  WS +  +F V+ G+MPA+ + F+ +   +  L     NT+ ++P  +++L
Sbjct:  189 ISPAEHPTICTFTPEKGGKPAQLIIWALSEGKITKKIASKTFFKADSCQLKWNPLGNAILCLAITDFDSSNKSYYGENTLYLLSFQGVNGTLGGNSVRVSL-TTGPVHDFTWSPTSRQFGVIAGYMPATISFFDLRGNVVHSLPQQAKNTMLFSPSGHYIL 348          
The following BLAST results are available for this feature:
BLAST of FC930532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
EIF2A_SCHPO2.849e-4638.96Eukaryotic translation initiation factor 2A OS=Sch... [more]
EIF2A_DANRE2.113e-4140.34Eukaryotic translation initiation factor 2A OS=Dan... [more]
EIF2A_HUMAN1.159e-3939.74Eukaryotic translation initiation factor 2A OS=Hom... [more]
EIF2A_MOUSE3.373e-3939.83Eukaryotic translation initiation factor 2A OS=Mus... [more]
EIF2A_XENLA1.282e-3839.66Eukaryotic translation initiation factor 2A OS=Xen... [more]
EIF2A_CHICK1.674e-3838.60Eukaryotic translation initiation factor 2A OS=Gal... [more]
EIF2A_DICDI9.506e-3433.19Eukaryotic translation initiation factor 2A OS=Dic... [more]
EIF2A_DROME4.718e-3335.93Eukaryotic translation initiation factor 2A OS=Dro... [more]
EIF2A_CAEEL1.285e-3036.36Eukaryotic translation initiation factor 2A OS=Cae... [more]
EIF2A_YEAST6.614e-1932.30Eukaryotic translation initiation factor 2A OS=Sac... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34008E10EF PostHarvC1 Citrus clementina cDNA clone C34008E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930532 ID=FC930532; Name=FC930532; organism=Citrus clementina; type=EST; length=709bp
CTCAACACCACAGGAAAAGAACGTGATCCTTTGGGAGACGGAGACTGGTG
AAGCTGTTTATCAGCTATTCCAGAAGAATATGACAAAAACCACATGGCCG
TCAATCAGATTTAGTTCAGATGAAGCTGTTGCATGTCGTATGGCAACAAA
CGAAATACAATTTTTTGATACTACGGATTTTCCTAAAGGAATCTTATATC
GGTTAAGAGTTCCTGGGGTGGCTGCTTTTGAGGTTTCTAAGGCACCTGGT
TCTCATGTGGCGGTATTTGTTCCAGAATCTAAGGGGAGCCCTGCCAGTGT
CCAGATATATGCTTGTGGAAAAGATTTGCAAAGTCAACCTCTTGCTCGAA
GGAGCTTTTTCCGTTGTTCTACTGTGCAACTGAATTGGAATCTTGGTTCC
ACTGGGCTTCTAGCTGTGGCGCAGTCAGATGTAGATAAGACCAACCAGAG
TTATTATGGGGAGTCAAAGCTAAACTACCTTACAACTGATGGAACCCACG
AAGGCCTTGTGCCTCTTCGTAAAGAGGGTCCTGTTCATGATGTTCAGTGG
TCATATTCAGGCTCAGAGTTTGCTGTTGTTTATGGATTTATGCCTGCAAG
TGCGACAATTTTTAACAAGAAGTGCAGGCCGATACTCGAGCTCGGTAGTG
GCCCTTACAATACTGTCCGGTGGAACCCAAAGGAAAATTTTATGCTTGGC
TGGNTTTGG
back to top