FC930551

Overview
NameFC930551
Unique NameFC930551
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10851 contig Ccv1_Contig10851:13..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC930551 vs. ExPASy Swiss-Prot
Match: PSMF1_ARATH (Probable proteasome inhibitor OS=Arabidopsis thaliana GN=At3g53970 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.602e-55
Identity = 115/216 (53.24%), Postives = 151/216 (69.91%), Query Frame = 2 
Query:   86 MPNEKSVMAVIRAARPTFRNDFDKIAFVVHASFLASGHVLTATGPAADTEFTSPSSSTDEVGIDHWNELADDNYAFLFINPEKGSKKVLVKCLVMNSKLLADALAEGASEPVHLEINVADYVAE-NGGNYSDKFKNLEKLVTDLDKDIISKLYGSPKTASSERCEGSRPIVTDPAFGFEHE---GPQSYVTGIPVPPYHPSRS-SDLFPGPGAGMY 718
            M N ++VMA+IR ARP FRN+ DK+AF +H+SF+ASG++LTATG  A  +    SSS ++VGI+ WNE  +  YAF++ NP+KGSKK+LVKCL M+ KLL DA+A+G +EP HLEI V DY  E N G+YS +FKNL+KLVTDL  +II KL G PK  +S R + S     +P +  +     GPQ + +G+ VPP   +   SDLFPGPGAGMY
Sbjct:    1 MANSQTVMAMIRLARPPFRNNHDKVAFAIHSSFVASGYILTATGRPAFADEALSSSSQNDVGIEGWNEF-EGEYAFVYANPKKGSKKILVKCLAMDDKLLVDAIADGGAEPAHLEIKVGDYAEESNEGDYSAQFKNLDKLVTDLQSEIIDKLDGKPKPVAS-RAQSSSETNEEPRYYDDTPNPLGPQIHPSGVVVPPIPGNGGYSDLFPGPGAGMY 214
The following BLAST results are available for this feature:
BLAST of FC930551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PSMF1_ARATH2.602e-5553.24Probable proteasome inhibitor OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionC34008G05EF PostHarvC1 Citrus clementina cDNA clone C34008G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930551 ID=FC930551; Name=FC930551; organism=Citrus clementina; type=EST; length=718bp
ACCCATCAAATTTGCAGACATTCGAAACAAGACCTCGCTCTCTCATAAAC
TCTAAAAACAAAGAAAGGAAAAAGATTAAAAAAAAATGCCGAACGAGAAA
TCAGTGATGGCCGTGATAAGAGCGGCAAGACCTACCTTTAGAAACGACTT
CGATAAAATTGCATTTGTCGTTCACGCCTCTTTCCTTGCCAGTGGACACG
TGTTAACCGCCACTGGCCCTGCCGCGGACACCGAGTTCACCTCTCCCTCC
TCCTCCACCGATGAAGTAGGAATTGATCACTGGAACGAACTAGCTGATGA
TAATTACGCGTTTCTGTTTATAAACCCTGAGAAAGGTTCAAAGAAAGTGT
TGGTGAAGTGTCTCGTGATGAACAGTAAATTGCTGGCTGATGCATTAGCT
GAGGGAGCTTCGGAGCCTGTGCATCTCGAAATCAATGTTGCAGACTACGT
TGCAGAAAATGGAGGCAATTACTCTGATAAGTTCAAGAATTTAGAGAAGC
TTGTGACAGATCTTGATAAAGACATTATTTCAAAATTATACGGCTCCCCA
AAAACAGCTAGCTCGGAAAGATGTGAAGGATCAAGGCCTATTGTAACCGA
TCCTGCTTTTGGATTTGAGCATGAAGGGCCTCAATCTTATGTTACAGGAA
TTCCTGTTCCTCCCTATCACCCAAGTCGTAGTAGCGATCTTTTTCCTGGC
CCTGGTGCTGGAATGTAT
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