FC930594

Overview
NameFC930594
Unique NameFC930594
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC930594 vs. ExPASy Swiss-Prot
Match: UN93L_ARATH (UNC93-like protein OS=Arabidopsis thaliana GN=At3g09470 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.823e-40
Identity = 88/117 (75.21%), Postives = 99/117 (84.62%), Query Frame = 2 
Query:  374 DEEAPLVADS---LQVLTPKNYTRDVHILSCAFLLIFLAYGASQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYL 715
            DEEAPL++ S    +V   K YTRDVHILS +FLLIFLAYGA+QNLETTVN +  LGTISLGILY SF   S+VASLVVR++GSKNAL+LGTTGYWLFVAANL PSW+TMVPASLYL
Sbjct:    6 DEEAPLISASGEDRKVRAGKCYTRDVHILSISFLLIFLAYGAAQNLETTVNKD--LGTISLGILYVSFMFCSMVASLVVRLMGSKNALVLGTTGYWLFVAANLKPSWFTMVPASLYL 120
[Close]
BLAST of FC930594 vs. ExPASy Swiss-Prot
Match: UN93A_HUMAN (Protein unc-93 homolog A OS=Homo sapiens GN=UNC93A PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12
Identity = 37/95 (38.95%), Postives = 56/95 (58.95%), Query Frame = 2 
Query:  434 RDVHILSCAFLLIFLAYGASQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYL 715
            R+V ++S  FLL+F AYG  Q+L++++ +E  LG  +L  LY      S+ +  L++  LG K  +IL   GY  F   N F SWYT++P S+ L
Sbjct:    6 RNVLVVSFGFLLLFTAYGGLQSLQSSLYSEEGLGVTALSTLYGGMLLSSMFLPPLLIERLGCKGTIILSMCGYVAFSVGNFFASWYTLIPTSILL 100
The following BLAST results are available for this feature:
BLAST of FC930594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UN93L_ARATH6.823e-4075.21UNC93-like protein OS=Arabidopsis thaliana GN=At3g... [more]
UN93A_HUMAN2.702e-1238.95Protein unc-93 homolog A OS=Homo sapiens GN=UNC93A... [more]
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Properties
Property NameValue
Genbank descriptionC34009C01EF PostHarvC1 Citrus clementina cDNA clone C34009C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930594 ID=FC930594; Name=FC930594; organism=Citrus clementina; type=EST; length=717bp
GACTTTCCACGCTTCGATTATTTCAAAGCGTCCCTCCCTCCTCCGTTTGA
TTCCCAAATAATCCTTCCAAAATTCAAAAACAACAACATTTAAAAATCCA
ATGAACTTATTTTATCGCTGAACCGATTTATAATCAGTCATTTAAAAATC
CGATGAACTTATTTAATTTCTGAACCCAAACTCTTTTACATGTCTTGTAG
TTCACAAGATTCTAGCCGGCACTCGCCGTGTTTTTGGTCCCACTCGTTTG
TACTACCTTCACTCGCTTCTCGCATATATTATGTAGCGATTTCGCCATCA
GATTGATCTCGAAACTTCAAGCGAAAAAAAAGGGGGGAAAAAAAGAAAAA
AAATGGAGTCCGTAGATTCTCGCGATGAAGAAGCACCTCTTGTTGCTGAT
AGCTTGCAAGTTCTTACTCCAAAGAACTACACGCGTGATGTTCACATCCT
CAGCTGCGCGTTTCTTTTGATTTTTCTCGCTTATGGGGCTTCTCAGAATT
TAGAAACTACTGTTAATACCGAGGGGAACTTGGGAACGATTTCGCTTGGG
ATATTGTACACGTCGTTCACGTGTTTCTCTCTAGTTGCTTCATTGGTGGT
TCGAGTGTTGGGTTCGAAGAACGCTCTGATCCTTGGGACTACTGGGTATT
GGCTATTCGTGGCTGCCAATTTGTTCCCTTCGTGGTACACTATGGTGCCG
GCATCGTTGTATCTTGG
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