FC930601
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930601 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2) HSP 1 Score: 162.54 bits (410), Expect = 2.065e-39 Identity = 94/186 (50.54%), Postives = 114/186 (61.29%), Query Frame = 1 Query: 166 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK-RPTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYN 720 IFVKTL G++F++EVKP D V DVK IETV+G++ YPAA+QMLI+QGKVLKD+TTLEEN V ENSF+VIML+K K P+G + ++ AP+ VYG AASNLVAG LE +QQILDMGGG+WDRDTVVRALRAA+N Sbjct: 3 IFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKTKASPSGASTASAPAPS----------ATQPQTVATPQVSAPTASVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFN 177
BLAST of FC930601 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2) HSP 1 Score: 147.517 bits (371), Expect = 6.875e-35 Identity = 85/185 (45.95%), Postives = 99/185 (53.51%), Query Frame = 1 Query: 166 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYN 720 I VKTLKG++F +EV V DVK IET QG +YPA QQMLI+QGKVLKDDTTL+ENKV ENSF+VIML + K + TS AP+ YG A SNLVAG+NLE IQ IL+MGGG WDRD V+ AL AA+N Sbjct: 3 ISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPATTVPVTVSAPTPTATASPAPAVAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFN 187
BLAST of FC930601 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2) HSP 1 Score: 132.88 bits (333), Expect = 1.752e-30 Identity = 76/183 (41.53%), Postives = 99/183 (54.10%), Query Frame = 1 Query: 172 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYN 720 VKTLKG+ F++ V P DT+ VK IE Q D YP QQ+LI+ GKVLKD+TTL ENKV E F+V+ML+K+K + G +ST PT YG AAS LV+G+++E +QQI++MGGG+WD++TV RALRAAYN Sbjct: 5 VKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVVMLSKSKTASSAG-PSSTQPTS-----------TTTSTISSTTLAAPSTTQSIAVPASNSTPVQEQPTAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYN 175
BLAST of FC930601 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3) HSP 1 Score: 129.798 bits (325), Expect = 1.483e-29 Identity = 74/185 (40.00%), Postives = 101/185 (54.59%), Query Frame = 1 Query: 172 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR--PTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYN 720 VKTLKG+ F++ V P DT+ VK IE QG D YP QQ+LI+ GKVLKD+T+L ENKV E F+V+ML+K+K G+ S +++ ++ YG AAS LV+G++LE +QQI++MGGG+WD++TV RALRAAYN Sbjct: 5 VKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSKSGGSAGQASVQTSSVSQPVSATTSSTKP------------AAPSTTQSSPVPASPIPAQEQPAAQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYN 177
BLAST of FC930601 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2) HSP 1 Score: 127.102 bits (318), Expect = 9.616e-29 Identity = 61/91 (67.03%), Postives = 77/91 (84.62%), Query Frame = 1 Query: 166 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTSTAPTK 438 IFVKTLKGT F++EVKPED+V DVK IE+VQG+DVYPAA+QMLI+QGKVLKD+TT+EENKVAENSF+VIM+ K+K + S+ S ++ Sbjct: 3 IFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVIMMNKSKPASAAASSASAGTSQ 93 HSP 2 Score: 76.2554 bits (186), Expect = 1.947e-13 Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 1 Query: 589 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYN 720 VYG AASNL AG+NLE IQQILDMGGGTWDR+TVV ALRAA+N Sbjct: 173 VYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFN 216
BLAST of FC930601 vs. ExPASy Swiss-Prot
Match: RD23A_HUMAN (UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 8.443e-17 Identity = 57/188 (30.32%), Postives = 86/188 (45.74%), Query Frame = 1 Query: 166 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGH---AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYN 720 I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + + ++ E +FVV+M+TK K G + +PT G G AAS LV G+ E + +I+ MG ++R+ VV ALRA+YN Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYN 189
BLAST of FC930601 vs. ExPASy Swiss-Prot
Match: RD23A_BOVIN (UV excision repair protein RAD23 homolog A OS=Bos taurus GN=RAD23A PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.881e-16 Identity = 57/188 (30.32%), Postives = 86/188 (45.74%), Query Frame = 1 Query: 166 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGH---AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYN 720 I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + + ++ E +FVV+M+TK K G + +PT G G AAS LV G+ E + +I+ MG ++R+ VV ALRA+YN Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTSPGTSVPSEASPTATPESSTSFPSAPASGMSHPPPTAREDKSPSEESAPTTSPESVSGSVPSSGSGGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYN 189
BLAST of FC930601 vs. ExPASy Swiss-Prot
Match: RD23A_MOUSE (UV excision repair protein RAD23 homolog A OS=Mus musculus GN=Rad23a PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 7.148e-16 Identity = 57/188 (30.32%), Postives = 85/188 (45.21%), Query Frame = 1 Query: 166 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGH---AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYN 720 I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + + + E +FVV+M+TK K G + +PT G G AAS LV G+ E + +I+ MG ++R+ VV ALRA+YN Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYHIDEKNFVVVMVTKAKAGQGISAPPEASPTAVPEPSTPFPPVLASGMSHPPPTSREDKSPSEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYN 189
BLAST of FC930601 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.051e-15 Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 1 Query: 166 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTS 423 + +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K T T+ Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVTSAVPATT 88
BLAST of FC930601 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15 Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 1 Query: 166 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT 402 + +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K T Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVT 81 The following BLAST results are available for this feature:
BLAST of FC930601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930601 ID=FC930601; Name=FC930601; organism=Citrus clementina; type=EST; length=731bpback to top |