FC930601

Overview
NameFC930601
Unique NameFC930601
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930601 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 2.065e-39
Identity = 94/186 (50.54%), Postives = 114/186 (61.29%), Query Frame = 1
Query:  166 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK-RPTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYN 720
            IFVKTL G++F++EVKP D V DVK  IETV+G++ YPAA+QMLI+QGKVLKD+TTLEEN V ENSF+VIML+K K  P+G  + ++ AP+                                                   VYG AASNLVAG  LE  +QQILDMGGG+WDRDTVVRALRAA+N
Sbjct:    3 IFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKTKASPSGASTASAPAPS----------ATQPQTVATPQVSAPTASVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFN 177          
BLAST of FC930601 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 6.875e-35
Identity = 85/185 (45.95%), Postives = 99/185 (53.51%), Query Frame = 1
Query:  166 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYN 720
            I VKTLKG++F +EV     V DVK  IET QG  +YPA QQMLI+QGKVLKDDTTL+ENKV ENSF+VIML + K  +     TS AP+                                                    YG A SNLVAG+NLE  IQ IL+MGGG WDRD V+ AL AA+N
Sbjct:    3 ISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPATTVPVTVSAPTPTATASPAPAVAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFN 187          
BLAST of FC930601 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.752e-30
Identity = 76/183 (41.53%), Postives = 99/183 (54.10%), Query Frame = 1
Query:  172 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYN 720
            VKTLKG+ F++ V P DT+  VK  IE  Q  D YP  QQ+LI+ GKVLKD+TTL ENKV E  F+V+ML+K+K  +  G  +ST PT                                                    YG AAS LV+G+++E  +QQI++MGGG+WD++TV RALRAAYN
Sbjct:    5 VKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVVMLSKSKTASSAG-PSSTQPTS-----------TTTSTISSTTLAAPSTTQSIAVPASNSTPVQEQPTAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYN 175          
BLAST of FC930601 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.483e-29
Identity = 74/185 (40.00%), Postives = 101/185 (54.59%), Query Frame = 1
Query:  172 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR--PTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYN 720
            VKTLKG+ F++ V P DT+  VK  IE  QG D YP  QQ+LI+ GKVLKD+T+L ENKV E  F+V+ML+K+K     G+ S  +++ ++                                                   YG AAS LV+G++LE  +QQI++MGGG+WD++TV RALRAAYN
Sbjct:    5 VKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSKSGGSAGQASVQTSSVSQPVSATTSSTKP------------AAPSTTQSSPVPASPIPAQEQPAAQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYN 177          
BLAST of FC930601 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 9.616e-29
Identity = 61/91 (67.03%), Postives = 77/91 (84.62%), Query Frame = 1
Query:  166 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTSTAPTK 438
            IFVKTLKGT F++EVKPED+V DVK  IE+VQG+DVYPAA+QMLI+QGKVLKD+TT+EENKVAENSF+VIM+ K+K  +   S+ S   ++
Sbjct:    3 IFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVIMMNKSKPASAAASSASAGTSQ 93          

HSP 2 Score: 76.2554 bits (186), Expect = 1.947e-13
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 1
Query:  589 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYN 720
            VYG AASNL AG+NLE  IQQILDMGGGTWDR+TVV ALRAA+N
Sbjct:  173 VYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFN 216          
BLAST of FC930601 vs. ExPASy Swiss-Prot
Match: RD23A_HUMAN (UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.443e-17
Identity = 57/188 (30.32%), Postives = 86/188 (45.74%), Query Frame = 1
Query:  166 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGH---AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYN 720
            I +KTL+  +F + ++P++TV  +K KIE  +G D +P A Q LIY GK+L DD  + + ++ E +FVV+M+TK K   G  +    +PT                                                  G  G    AAS LV G+  E  + +I+ MG   ++R+ VV ALRA+YN
Sbjct:    5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYN 189          
BLAST of FC930601 vs. ExPASy Swiss-Prot
Match: RD23A_BOVIN (UV excision repair protein RAD23 homolog A OS=Bos taurus GN=RAD23A PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.881e-16
Identity = 57/188 (30.32%), Postives = 86/188 (45.74%), Query Frame = 1
Query:  166 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGH---AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYN 720
            I +KTL+  +F + ++P++TV  +K KIE  +G D +P A Q LIY GK+L DD  + + ++ E +FVV+M+TK K   G    +  +PT                                                  G  G    AAS LV G+  E  + +I+ MG   ++R+ VV ALRA+YN
Sbjct:    5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTSPGTSVPSEASPTATPESSTSFPSAPASGMSHPPPTAREDKSPSEESAPTTSPESVSGSVPSSGSGGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYN 189          
BLAST of FC930601 vs. ExPASy Swiss-Prot
Match: RD23A_MOUSE (UV excision repair protein RAD23 homolog A OS=Mus musculus GN=Rad23a PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.148e-16
Identity = 57/188 (30.32%), Postives = 85/188 (45.21%), Query Frame = 1
Query:  166 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGH---AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYN 720
            I +KTL+  +F + ++P++TV  +K KIE  +G D +P A Q LIY GK+L DD  + +  + E +FVV+M+TK K   G  +    +PT                                                  G  G    AAS LV G+  E  + +I+ MG   ++R+ VV ALRA+YN
Sbjct:    5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYHIDEKNFVVVMVTKAKAGQGISAPPEASPTAVPEPSTPFPPVLASGMSHPPPTSREDKSPSEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYN 189          
BLAST of FC930601 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.051e-15
Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 1
Query:  166 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTS 423
            + +KTL+  +F +++ PE+TV  +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K  T     T+
Sbjct:    3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVTSAVPATT 88          
BLAST of FC930601 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15
Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 1
Query:  166 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT 402
            + +KTL+  +F +++ PE+TV  +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K  T
Sbjct:    3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVT 81          
The following BLAST results are available for this feature:
BLAST of FC930601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RD23D_ARATH2.065e-3950.54Putative DNA repair protein RAD23-4 OS=Arabidopsis... [more]
RAD23_ORYSJ6.875e-3545.95Probable DNA repair protein RAD23 OS=Oryza sativa ... [more]
RD23B_ARATH1.752e-3041.53Putative DNA repair protein RAD23-2 OS=Arabidopsis... [more]
RD23A_ARATH1.483e-2940.00Putative DNA repair protein RAD23-1 OS=Arabidopsis... [more]
RD23C_ARATH9.616e-2967.03Putative DNA repair protein RAD23-3 OS=Arabidopsis... [more]
RD23A_HUMAN8.443e-1730.32UV excision repair protein RAD23 homolog A OS=Homo... [more]
RD23A_BOVIN1.881e-1630.32UV excision repair protein RAD23 homolog A OS=Bos ... [more]
RD23A_MOUSE7.148e-1630.32UV excision repair protein RAD23 homolog A OS=Mus ... [more]
RD23B_RAT6.051e-1545.35UV excision repair protein RAD23 homolog B OS=Ratt... [more]
RD23B_MOUSE7.903e-1548.10UV excision repair protein RAD23 homolog B OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionC34009C08EF PostHarvC1 Citrus clementina cDNA clone C34009C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930601 ID=FC930601; Name=FC930601; organism=Citrus clementina; type=EST; length=731bp
GAGGGAAGTTCTTCTATATGCTTCTTAACTTGTGCTTCGGTTTTCTCTCT
CCGACTGTATCAATTATAGATAGACATTGAAAAGACCTTGCGGATCGGAA
AACCAAATAAAATAGTTGAATTCGAGAGACCCAACGGAACGTAGAAAAAG
AAGAAGATGATGAAGATTTTCGTTAAAACTCTCAAAGGAACTTCTTTCGA
CGTCGAAGTGAAACCTGAAGACACGGTCTTTGATGTGAAAATGAAGATAG
AAACTGTTCAAGGATCGGATGTTTATCCTGCTGCACAACAGATGCTGATT
TATCAGGGGAAAGTCCTCAAAGATGATACTACACTGGAAGAGAACAAAGT
AGCTGAAAATAGTTTTGTTGTTATTATGTTAACAAAGAATAAGAGACCAA
CTGGTGAAGGTTCAACTACGTCAACTGCGCCTACAAAGGCTCCCCAGTCA
AGTGCCCCAACCCCTGCAGTGACCCCAGCAACAGCTCCTCAGACTGCCGT
GCCAATCTCTACAGAGCCTACACCTGCTCCTACTCCTGCTCCTGCTTCTG
CTTCTGTGTCATCAGTTTCTGCTACGTCAGAGTCTGGTGTGTATGGGCAT
GCTGCATCTAATCTGGTTGCTGGGAACAACTTGGAGGGAGCAATCCAGCA
GATTCTTGATATGGGTGGAGGGACTTGGGATAGAGATACTGTTGTTCGTG
CTCTTCGAGCTGCTTATAATATCCTGAGAGG
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