FC930625

Overview
NameFC930625
Unique NameFC930625
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.138e-41
Identity = 81/85 (95.29%), Postives = 83/85 (97.65%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TID +PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.647e-41
Identity = 81/85 (95.29%), Postives = 83/85 (97.65%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIWDTAGQESFRSITRSYYRGAAGALLVYD
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.647e-41
Identity = 81/85 (95.29%), Postives = 83/85 (97.65%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIWDTAGQESFRSITRSYYRGAAGALLVYD
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.647e-41
Identity = 81/85 (95.29%), Postives = 83/85 (97.65%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIWDTAGQESFRSITRSYYRGAAGALLVYD
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.647e-41
Identity = 81/85 (95.29%), Postives = 83/85 (97.65%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIWDTAGQESFRSITRSYYRGAAGALLVYD
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.647e-41
Identity = 81/85 (95.29%), Postives = 83/85 (97.65%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIWDTAGQESFRSITRSYYRGAAGALLVYD
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.647e-41
Identity = 81/85 (95.29%), Postives = 83/85 (97.65%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIWDTAGQESFRSITRSYYRGAAGALLVYD
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.647e-41
Identity = 81/85 (95.29%), Postives = 83/85 (97.65%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIWDTAGQESFRSITRSYYRGAAGALLVYD
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.647e-41
Identity = 81/85 (95.29%), Postives = 83/85 (97.65%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIWDTAGQESFRSITRSYYRGAAGALLVYD
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.125e-41
Identity = 80/85 (94.12%), Postives = 83/85 (97.65%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT+GVEFGARM+TIDG+ IKLQIWDTAGQESFRSITRSYYRGAAGALLVYD
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTMGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87
The following BLAST results are available for this feature:
BLAST of FC930625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
RAB2B_MAIZE2.138e-4195.29Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P... [more]
RAB2_LYMST3.647e-4195.29Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]
RAB2A_RABIT3.647e-4195.29Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RAB2A_PONAB3.647e-4195.29Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MOUSE3.647e-4195.29Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]
RAB2A_MACFA3.647e-4195.29Ras-related protein Rab-2A OS=Macaca fascicularis ... [more]
RAB2A_HUMAN3.647e-4195.29Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2... [more]
RAB2A_CHICK3.647e-4195.29Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]
RAB2A_CANFA3.647e-4195.29Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]
RAB2A_RAT8.125e-4194.12Ras-related protein Rab-2A OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionC34009E09EF PostHarvC1 Citrus clementina cDNA clone C34009E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930625 ID=FC930625; Name=FC930625; organism=Citrus clementina; type=EST; length=718bp
GATCCATCCATCAGTGCACGCCTGCACGGGCACGGCAAGGTACTCTGTGT
CAGTAAAGAACTAAGATTGGGGCTTTAAGGAAGGAAGGCATCCAGAAGTC
TGGAGACTCTCGAAGACTCAAAGCTCTGAGGGGGAAAAAAAAAATATAAT
TATAATAATAATAAAATGAAATAGTTAGAAAAGAGACAATCAGACAAAGC
GTGTCGGTGAGGGTGAGCAAATAGGTCACGGTGTCCGCACACATTCCCTA
TTCCTCTGCTTTTTGGTAAATCGTAAGAAATCAAGTTTTCAAATATTATT
ACATTACACGACGTATAATAAGCATATCAGCAGCAGGCAGCGGCGTCTTC
TTCGTCTTTTATTGTTGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGTTG
AGTTGAGTTGAGTTGAGAGACAGAGTTCATCTAAAAGAAACAACAGCAAC
AACAACATGTCGTACGATTATCTGTTCAAGTACATAATCATCGGAGACAC
TGGAGTAGGGAAATCATGCTTGCTATTGCAATTCACGGACAAGAGGTTTC
AGCCCGTTCATGATTTGACCATCGGCGTTGAATTCGGTGCTCGCATGGTC
ACCATCGATGGTCGCCCCATCAAGCTCCAGATTTGGGACACCGCTGGCCA
AGAATCTTTCAGATCTATCACAAGATCTTATTACAGAGGAGCGGCTGGGG
CACTTCTGGTTTATGATA
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