FC930658

Overview
NameFC930658
Unique NameFC930658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_VIGAC (Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 2.165e-88
Identity = 147/189 (77.78%), Postives = 159/189 (84.13%), Query Frame = 2
Query:  131 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            TEK+IAEY+WIGGSG+DLRSKARTLP P +DP+KLPKWNYDGSST QAPG+DSEVI+YPQ +FKDPFRRGNNILVMCDAYTPAGEPIPTNKR NAAK+F HPDVVAEEPWYGIEQEYTLLQKD+NWPL                   ADKA GRDIV++HYKACLYAG  ISGINGEVMPGQWEFQ  P
Sbjct:   16 TEKIIAEYIWIGGSGLDLRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHNAAKIFSHPDVVAEEPWYGIEQEYTLLQKDVNWPLGWPVGGFPGPQGPYYCGAGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGP 204          

HSP 2 Score: 30.0314 bits (66), Expect = 2.165e-88
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            VGP VGIS+GD+LW+
Sbjct:  202 VGPAVGISAGDELWV 216          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA2_PHAVU (Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 5.747e-86
Identity = 143/189 (75.66%), Postives = 157/189 (83.07%), Query Frame = 2
Query:  131 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            TEK+IAEY+W+GGSGMDLRSKARTLP P  DP KLPKWNYDGSST+QAPGDDSEVILYPQ +FKDPFRRGNNILV+CD YTPAGEP+PTNKR++AAK+F HPDVVAE PWYGIEQEYTLLQKD+NWPL                   ADKA GRDIV++HYKAC+YAG  ISGINGEVMPGQWEFQ  P
Sbjct:   16 TEKIIAEYIWVGGSGMDLRSKARTLPGPVDDPAKLPKWNYDGSSTDQAPGDDSEVILYPQAIFKDPFRRGNNILVICDVYTPAGEPLPTNKRYDAAKIFSHPDVVAEVPWYGIEQEYTLLQKDVNWPLGWPLGGYPGPQGPYYCGVGADKAYGRDIVDAHYKACVYAGINISGINGEVMPGQWEFQVGP 204          

HSP 2 Score: 28.1054 bits (61), Expect = 5.747e-86
Identity = 10/14 (71.43%), Postives = 13/14 (92.86%), Query Frame = 1
Query:  688 VGPCVGISSGDQLW 729
            VGP VGIS+GD++W
Sbjct:  202 VGPSVGISAGDEVW 215          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA3_PEA (Glutamine synthetase root isozyme A OS=Pisum sativum GN=GS3A PE=2 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.664e-85
Identity = 142/189 (75.13%), Postives = 156/189 (82.54%), Query Frame = 2
Query:  131 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            TEK+IAEY+W+GGSG+D+RSKARTLP P +DP KLPKWNYDGSSTNQAPG DSEVILYPQ +FKDPFRRGNNILV+CD YTPAGEP+PTNKR+NAAK+F HPDV AE PWYGIEQEYTLLQKDINWPL                   ADKA GRDIV++HYKACL+AG  ISGINGEVMPGQWEFQ  P
Sbjct:   16 TEKIIAEYIWVGGSGIDIRSKARTLPGPVSDPAKLPKWNYDGSSTNQAPGKDSEVILYPQAIFKDPFRRGNNILVICDVYTPAGEPLPTNKRYNAAKIFSHPDVAAEVPWYGIEQEYTLLQKDINWPLGWPIGGYPGKQGPYYCGIGADKAYGRDIVDAHYKACLFAGINISGINGEVMPGQWEFQVGP 204          

HSP 2 Score: 28.4906 bits (62), Expect = 1.664e-85
Identity = 10/14 (71.43%), Postives = 13/14 (92.86%), Query Frame = 1
Query:  688 VGPCVGISSGDQLW 729
            VGP VGIS+GD++W
Sbjct:  202 VGPSVGISAGDEIW 215          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLN13_ARATH (Glutamine synthetase cytosolic isozyme 1-3 OS=Arabidopsis thaliana GN=GLN1-3 PE=1 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 2.170e-85
Identity = 142/190 (74.74%), Postives = 157/190 (82.63%), Query Frame = 2
Query:  131 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVPV 700
            T K+IAEY+WIGGSGMD+RSKARTLP P TDP+KLPKWNYDGSST QA G+DSEVILYPQ +FKDPFR+GNNILVMCDAYTPAG+PIPTNKR NAAK+F HPDV  EEPWYGIEQEYTL+QKD+NWP+                   ADKA+GRDIV++HYKACLYAG  ISGINGEVMPGQWEFQ  PV
Sbjct:   16 TGKIIAEYIWIGGSGMDIRSKARTLPGPVTDPSKLPKWNYDGSSTGQAAGEDSEVILYPQAIFKDPFRKGNNILVMCDAYTPAGDPIPTNKRHNAAKIFSHPDVAKEEPWYGIEQEYTLMQKDVNWPIGWPVGGYPGPQGPYYCGVGADKAIGRDIVDAHYKACLYAGIGISGINGEVMPGQWEFQVGPV 205          

HSP 2 Score: 28.4906 bits (62), Expect = 2.170e-85
Identity = 11/15 (73.33%), Postives = 13/15 (86.67%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            VGP  GISSGDQ+W+
Sbjct:  202 VGPVEGISSGDQVWV 216          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA4_PEA (Glutamine synthetase root isozyme B OS=Pisum sativum GN=GS3B PE=3 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 6.283e-85
Identity = 141/189 (74.60%), Postives = 156/189 (82.54%), Query Frame = 2
Query:  131 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            TEK+IAEY+W+GGSG+D+RSKARTLP P +DP KLPKWNYDGSST+QAPG DSEVILYPQ +FKDPFRRGNNILV+CD YTPAGEP+PTNKR+NAAK+F HPDV AE PWYGIEQEYTLLQKDINWPL                   ADKA GRDIV++HYKACL+AG  ISGINGEVMPGQWEFQ  P
Sbjct:   16 TEKIIAEYIWVGGSGIDIRSKARTLPGPVSDPAKLPKWNYDGSSTDQAPGKDSEVILYPQAIFKDPFRRGNNILVICDVYTPAGEPLPTNKRYNAAKIFSHPDVAAEVPWYGIEQEYTLLQKDINWPLGWPIGGYPGKQGPYYCGIGADKAYGRDIVDAHYKACLFAGINISGINGEVMPGQWEFQVGP 204          

HSP 2 Score: 28.4906 bits (62), Expect = 6.283e-85
Identity = 10/14 (71.43%), Postives = 13/14 (92.86%), Query Frame = 1
Query:  688 VGPCVGISSGDQLW 729
            VGP VGIS+GD++W
Sbjct:  202 VGPSVGISAGDEIW 215          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA1_MEDSA (Glutamine synthetase cytosolic isozyme OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 7.244e-85
Identity = 149/206 (72.33%), Postives = 163/206 (79.13%), Query Frame = 2
Query:  131 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP---------VWVSLLVI 721
            TEK+IAEY+WIGGSG+DLRSKARTLP P TDP++LPKWNYDGSST QAPG+DSEVI+YPQ +FKDPFRRGNNILVMCDAYTPAGEPIPTNKR  AAK+F HPDVVAE PWYGIEQEYTLLQKDINWPL                   ADKA GRDIV+SHYKACLYAG  ISGINGEVMPGQWEFQ  P         +WV+  ++
Sbjct:   16 TEKIIAEYIWIGGSGLDLRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHPDVVAEVPWYGIEQEYTLLQKDINWPLGWPVGGFPGPQGPYYCGAGADKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWVARYIL 221          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA3_MEDSA (Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 8.196e-85
Identity = 142/189 (75.13%), Postives = 154/189 (81.48%), Query Frame = 2
Query:  131 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            +EK+IAEY+W+GGSGMDLRSKARTLP P +DP KLPKWNYDGSSTNQAPG DSEVILYPQ +FKDPFR+GNNILV+CD YTPAGEP+PTNKR NAAK+F HPDV AE PWYGIEQEYTLLQKD NWPL                   ADKA GRDIV++HYKACLYAG  ISGINGEVMPGQWEFQ  P
Sbjct:   16 SEKIIAEYIWVGGSGMDLRSKARTLPGPVSDPAKLPKWNYDGSSTNQAPGQDSEVILYPQAIFKDPFRQGNNILVICDVYTPAGEPLPTNKRHNAAKIFSHPDVAAEVPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGADKAYGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGP 204          

HSP 2 Score: 28.4906 bits (62), Expect = 8.196e-85
Identity = 10/14 (71.43%), Postives = 13/14 (92.86%), Query Frame = 1
Query:  688 VGPCVGISSGDQLW 729
            VGP VGIS+GD++W
Sbjct:  202 VGPSVGISAGDEIW 215          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA1_PHAVU (Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 1.395e-84
Identity = 141/189 (74.60%), Postives = 157/189 (83.07%), Query Frame = 2
Query:  131 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            TEKVIAEY+WIGGSG+DLRSKARTLP P  +P++LPKWNYDGSST QAPG DSEVI+YPQ +FKDPFRRGNNILV+CDAYTPAGEPIPTNKR NAAK+F +PDVVAEEPWYGIEQEYTLLQK++NWP+                   ADKA GRDIV++HYKAC+YAG  ISGINGEVMPGQWEFQ  P
Sbjct:   16 TEKVIAEYIWIGGSGLDLRSKARTLPGPVKNPSELPKWNYDGSSTGQAPGQDSEVIIYPQAIFKDPFRRGNNILVICDAYTPAGEPIPTNKRHNAAKIFSNPDVVAEEPWYGIEQEYTLLQKEVNWPVGWPVGGFPGPQGPYYCGVGADKAFGRDIVDAHYKACVYAGINISGINGEVMPGQWEFQVGP 204          

HSP 2 Score: 30.0314 bits (66), Expect = 1.395e-84
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            VGP VGIS+GD+LW+
Sbjct:  202 VGPAVGISAGDELWV 216          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA2_SOYBN (Glutamine synthetase cytosolic isozyme 2 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 4.037e-84
Identity = 142/189 (75.13%), Postives = 155/189 (82.01%), Query Frame = 2
Query:  131 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            T+KVIAEY+W+GGSGMD+RSKARTL  P  DP+KLPKWNYDGSST QAPG DSEVILYPQ +FKDPFRRG+NILVMCDAYTPAGEPIPTNKR NAAK+FGHPDV AEEPWYG+EQEYTLLQKD+ WPL                   A+KA GRDIV+SHYKAC+YAG  ISGINGEVMPGQWEFQ  P
Sbjct:   16 TDKVIAEYIWVGGSGMDMRSKARTLSGPVKDPSKLPKWNYDGSSTGQAPGQDSEVILYPQAIFKDPFRRGSNILVMCDAYTPAGEPIPTNKRNNAAKIFGHPDVAAEEPWYGLEQEYTLLQKDVQWPLGWPLGGFPGPQGPYYCGTGANKAFGRDIVDSHYKACIYAGINISGINGEVMPGQWEFQVGP 204          

HSP 2 Score: 26.9498 bits (58), Expect = 4.037e-84
Identity = 9/15 (60.00%), Postives = 13/15 (86.67%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            VGP +GIS+ D+LW+
Sbjct:  202 VGPSIGISAADELWV 216          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA3_PHAVU (Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=Gln-gamma PE=2 SV=2)

HSP 1 Score: 305.064 bits (780), Expect = 6.870e-84
Identity = 142/189 (75.13%), Postives = 156/189 (82.54%), Query Frame = 2
Query:  131 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            TE+VIAEY+W+GGSGMD+RSKARTL  P  DP+KLPKWNYDGSST QAPG DSEVILYPQT+F+DPFRRGNNILVMCDAYTPAGEPIPTNKR NAAK+F +P+VVAEEPWYGIEQEYTLLQKD+ WP+                   A+KA GRDIV+SHYKACLYAG  ISGINGEVMPGQWEFQ  P
Sbjct:   16 TERVIAEYIWVGGSGMDMRSKARTLSGPVKDPSKLPKWNYDGSSTGQAPGQDSEVILYPQTIFRDPFRRGNNILVMCDAYTPAGEPIPTNKRHNAAKIFSNPEVVAEEPWYGIEQEYTLLQKDVQWPVGWPLGGFPGPQGPYYCGIGANKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 204          

HSP 2 Score: 27.335 bits (59), Expect = 6.870e-84
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            VGP VGIS+ D+LW+
Sbjct:  202 VGPSVGISAADELWV 216          
The following BLAST results are available for this feature:
BLAST of FC930658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA_VIGAC2.165e-8877.78Glutamine synthetase nodule isozyme OS=Vigna aconi... [more]
GLNA2_PHAVU5.747e-8675.66Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE... [more]
GLNA3_PEA1.664e-8575.13Glutamine synthetase root isozyme A OS=Pisum sativ... [more]
GLN13_ARATH2.170e-8574.74Glutamine synthetase cytosolic isozyme 1-3 OS=Arab... [more]
GLNA4_PEA6.283e-8574.60Glutamine synthetase root isozyme B OS=Pisum sativ... [more]
GLNA1_MEDSA7.244e-8572.33Glutamine synthetase cytosolic isozyme OS=Medicago... [more]
GLNA3_MEDSA8.196e-8575.13Glutamine synthetase nodule isozyme OS=Medicago sa... [more]
GLNA1_PHAVU1.395e-8474.60Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE... [more]
GLNA2_SOYBN4.037e-8475.13Glutamine synthetase cytosolic isozyme 2 OS=Glycin... [more]
GLNA3_PHAVU6.870e-8475.13Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34009H06EF PostHarvC1 Citrus clementina cDNA clone C34009H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930658 ID=FC930658; Name=FC930658; organism=Citrus clementina; type=EST; length=732bp
GGTCTCTCCTCCCACCTTTCTCGCTCATTTTTTATTTTCATTTTCGTTTT
CGTTTCAAACAAACAAAGCTGCAAGCTAGGCAGCCATGTCTCTTCTCAAC
GATCTCCTCAACCTTAATCTCTCTGAATCCACCGAAAAAGTCATCGCCGA
ATACGTATGGATAGGCGGATCTGGTATGGATTTGAGAAGCAAAGCCAGAA
CTTTGCCAGCTCCAACAACGGACCCTACCAAGCTACCGAAATGGAATTAC
GATGGCTCCAGCACTAACCAAGCCCCTGGTGATGACAGTGAAGTTATTTT
GTACCCGCAAACGGTGTTTAAGGATCCTTTCAGAAGAGGGAACAATATCC
TGGTAATGTGCGATGCGTACACTCCAGCCGGCGAGCCCATCCCAACAAAC
AAAAGATTCAATGCCGCCAAAGTTTTCGGCCACCCCGATGTTGTCGCCGA
AGAGCCATGGTATGGCATTGAGCAGGAGTACACTCTTCTTCAAAAAGACA
TAAACTGGCCCTTGGGGTGGCCAGTTGGCGGCTATCCTGGCCCTCAGGGA
CCTTACTACTGCGGTGTTGGCGCTGATAAGGCTTTAGGCCGAGACATTGT
GAATTCTCACTACAAAGCTTGCCTTTACGCTGGAAATTACATCAGTGGCA
TTAACGGTGAAGTTATGCCGGGTCAGTGGGAATTCCAGTGGGTCCCTGTG
TGGGTATCTCTTCTGGTGATCAGTTATGGATG
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