FC930659

Overview
NameFC930659
Unique NameFC930659
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15199 contig Ccv1_Contig15199:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930659 vs. ExPASy Swiss-Prot
Match: NDUS8_ARATH (NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial OS=Arabidopsis thaliana GN=TYKY PE=1 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.242e-67
Identity = 130/168 (77.38%), Postives = 136/168 (80.95%), Query Frame = 1
Query:  205 ILARKSLSALRARHLAVSGQALQGSQQYGLRFNAHPYSSYFPSXXXXXXXXXXXXXISKDWSSVFERSINMLFLTEMVRGLGLTLKYFFDKKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGF 708
            ILAR+SL+ LRARHL +SGQALQGS    L+     Y S                 ISKDW++VFERSIN LFLTEMVRGL LTLKYFFD KVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGF
Sbjct:    4 ILARRSLNTLRARHLVLSGQALQGSHLSRLQSRGISYGS----NKDDEEAEQLSKEISKDWNTVFERSINTLFLTEMVRGLSLTLKYFFDPKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGF 167          
BLAST of FC930659 vs. ExPASy Swiss-Prot
Match: NDUS8_SOLTU (NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial OS=Solanum tuberosum GN=TYKY PE=1 SV=2)

HSP 1 Score: 245.743 bits (626), Expect = 1.776e-64
Identity = 126/173 (72.83%), Postives = 138/173 (79.77%), Query Frame = 1
Query:  205 ILARKSLSALRARHLAVSGQALQGSQQY-----GLRFNAHPYSSYFPSXXXXXXXXXXXXXISKDWSSVFERSINMLFLTEMVRGLGLTLKYFFDKKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGF 708
            ILARKSLSALR+R L ++G  ++G+  Y     G R  A  +S  F +             +SKDW+SVFERSIN LFLTEMVRGL LTLKYFF+KKVTINYPFEKGPLSPRFRGEHALRRY TGEERCIACKLCEA+CPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGF
Sbjct:    4 ILARKSLSALRSRQLVLAGHTIEGTNGYNRTLLGTRSFATKHS--FSTDKDDEEREQLAKELSKDWNSVFERSINTLFLTEMVRGLMLTLKYFFEKKVTINYPFEKGPLSPRFRGEHALRRYATGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGF 174          
BLAST of FC930659 vs. ExPASy Swiss-Prot
Match: NDUS8_TOBAC (NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial OS=Nicotiana tabacum GN=TYKY PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.095e-61
Identity = 120/172 (69.77%), Postives = 133/172 (77.33%), Query Frame = 1
Query:  205 ILARKSLSALRARHLAVSGQALQ--GSQQYGLRFNAHPYSSY--FPSXXXXXXXXXXXXXISKDWSSVFERSINMLFLTEMVRGLGLTLKYFFDKKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGF 708
            ILARKSLSALR+R L ++GQA Q   +   G       +++   F +             +SKDW+SVFE+ IN LFLTEMVRGL LTLKYFF+KKVTINYPFEKGPLSPRFRGE  LRRYPTGEERCIACKLCEA+CPAQAITIEAE REDGSRRTTRYDIDMTKCIYCGF
Sbjct:    4 ILARKSLSALRSRQLVLAGQAWQQGANTSNGTLLGTRTFATNDSFSTDKDDEEREQLAKELSKDWNSVFEQQINTLFLTEMVRGLMLTLKYFFEKKVTINYPFEKGPLSPRFRGEQPLRRYPTGEERCIACKLCEAICPAQAITIEAEAREDGSRRTTRYDIDMTKCIYCGF 175          
BLAST of FC930659 vs. ExPASy Swiss-Prot
Match: NDUS8_BOVIN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial OS=Bos taurus GN=NDUFS8 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.577e-47
Identity = 88/111 (79.28%), Postives = 95/111 (85.59%), Query Frame = 1
Query:  376 SKDWSSVFERSINMLFLTEMVRGLGLTLKYFFDKKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGF 708
            S D  SV +R+   L  TE++RGLG+TL Y F +  TINYPFEKGPLSPRFRGEHALRRYP+GEERCIACKLCEAVCPAQAITIEAE R DGSRRTTRYDIDMTKCIYCGF
Sbjct:   47 SMDMKSVTDRAAQTLLWTELIRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGF 157          
BLAST of FC930659 vs. ExPASy Swiss-Prot
Match: NDUS8_PONAB (NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial OS=Pongo abelii GN=NDUFS8 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.395e-47
Identity = 87/109 (79.82%), Postives = 94/109 (86.24%), Query Frame = 1
Query:  382 DWSSVFERSINMLFLTEMVRGLGLTLKYFFDKKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGF 708
            D  SV +R+   L LTE+ RGLG+TL Y F +  TINYPFEKGPLSPRFRGEHALRRYP+GEERCIACKLCEA+CPAQAITIEAE R DGSRRTTRYDIDMTKCIYCGF
Sbjct:   47 DMKSVTDRAARTLLLTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGF 155          
BLAST of FC930659 vs. ExPASy Swiss-Prot
Match: NDUS8_RECAM (NADH-ubiquinone oxidoreductase subunit 8 OS=Reclinomonas americana GN=NAD8 PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.497e-47
Identity = 85/106 (80.19%), Postives = 95/106 (89.62%), Query Frame = 1
Query:  391 SVFERSINMLFLTEMVRGLGLTLKYFFDKKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGF 708
            ++  ++   LFLTE+V+G+ LTL YFF KKVT+NYPFEKGPLSPRFRGEHALRRY TGEERCIACKLCEA+CPAQAITIE+E R DGSRRTTRYDIDMTKCIYCGF
Sbjct:    2 TIINKTAQTLFLTELVKGMSLTLDYFFRKKVTLNYPFEKGPLSPRFRGEHALRRYQTGEERCIACKLCEAICPAQAITIESEPRIDGSRRTTRYDIDMTKCIYCGF 107          
BLAST of FC930659 vs. ExPASy Swiss-Prot
Match: NDUS8_MACFA (NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial OS=Macaca fascicularis GN=NDUFS8 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.670e-46
Identity = 87/109 (79.82%), Postives = 93/109 (85.32%), Query Frame = 1
Query:  382 DWSSVFERSINMLFLTEMVRGLGLTLKYFFDKKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGF 708
            D  SV +R+   L  TE+ RGLG+TL Y F +  TINYPFEKGPLSPRFRGEHALRRYP+GEERCIACKLCEAVCPAQAITIEAE R DGSRRTTRYDIDMTKCIYCGF
Sbjct:   47 DMKSVTDRAARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGF 155          
BLAST of FC930659 vs. ExPASy Swiss-Prot
Match: NDUS8_PONPY (NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial OS=Pongo pygmaeus GN=NDUFS8 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.181e-46
Identity = 86/109 (78.90%), Postives = 93/109 (85.32%), Query Frame = 1
Query:  382 DWSSVFERSINMLFLTEMVRGLGLTLKYFFDKKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGF 708
            D  SV +R+   L  TE+ RGLG+TL Y F +  TINYPFEKGPLSPRFRGEHALRRYP+GEERCIACKLCEA+CPAQAITIEAE R DGSRRTTRYDIDMTKCIYCGF
Sbjct:   47 DMKSVTDRAARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGF 155          
BLAST of FC930659 vs. ExPASy Swiss-Prot
Match: NDUS8_PANTR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial OS=Pan troglodytes GN=NDUFS8 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.181e-46
Identity = 86/109 (78.90%), Postives = 93/109 (85.32%), Query Frame = 1
Query:  382 DWSSVFERSINMLFLTEMVRGLGLTLKYFFDKKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGF 708
            D  SV +R+   L  TE+ RGLG+TL Y F +  TINYPFEKGPLSPRFRGEHALRRYP+GEERCIACKLCEA+CPAQAITIEAE R DGSRRTTRYDIDMTKCIYCGF
Sbjct:   47 DMKSVTDRAARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGF 155          
BLAST of FC930659 vs. ExPASy Swiss-Prot
Match: NDUS8_HUMAN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial OS=Homo sapiens GN=NDUFS8 PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.181e-46
Identity = 86/109 (78.90%), Postives = 93/109 (85.32%), Query Frame = 1
Query:  382 DWSSVFERSINMLFLTEMVRGLGLTLKYFFDKKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGF 708
            D  SV +R+   L  TE+ RGLG+TL Y F +  TINYPFEKGPLSPRFRGEHALRRYP+GEERCIACKLCEA+CPAQAITIEAE R DGSRRTTRYDIDMTKCIYCGF
Sbjct:   47 DMKSVTDRAARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGF 155          
The following BLAST results are available for this feature:
BLAST of FC930659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
NDUS8_ARATH2.242e-6777.38NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS8_SOLTU1.776e-6472.83NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS8_TOBAC4.095e-6169.77NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS8_BOVIN2.577e-4779.28NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS8_PONAB4.395e-4779.82NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS8_RECAM7.497e-4780.19NADH-ubiquinone oxidoreductase subunit 8 OS=Reclin... [more]
NDUS8_MACFA1.670e-4679.82NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS8_PONPY2.181e-4678.90NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS8_PANTR2.181e-4678.90NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS8_HUMAN2.181e-4678.90NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]

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Properties
Property NameValue
Genbank descriptionC34009H07EF PostHarvC1 Citrus clementina cDNA clone C34009H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930659 ID=FC930659; Name=FC930659; organism=Citrus clementina; type=EST; length=709bp
GATTTAGGCATTTGCTACGATTTCATATTTTTTGACACAAACAAAGTTGA
AATAATTTCATTCTCACTGTTAAATCAAATCACCCACTTATTGACAAGCT
GCTCTCCCAGTTTTTTGTTTCTCAAAATCACAGTGAAAGATCACGAACGC
AGAAGAGCTCCATCGTCTTCAGCTCTATCATCCATCCCATTGCCTATGGC
TTCCATCTTAGCTCGCAAATCCCTCTCCGCTCTTCGCGCTCGCCACCTCG
CGGTCTCGGGTCAAGCGTTGCAGGGTTCCCAACAATACGGGCTGCGATTC
AATGCCCACCCTTATTCGTCGTATTTCCCCAGCAAGAAAGATGATGAAGA
AAAAGAGCAACTTTTGAAGGAAATCTCGAAAGACTGGAGTTCTGTTTTTG
AGAGAAGCATAAACATGTTATTTCTCACCGAAATGGTTAGGGGTTTAGGG
TTGACACTCAAGTACTTCTTTGATAAAAAAGTCACTATCAATTATCCATT
TGAGAAAGGCCCTTTAAGTCCACGTTTTCGTGGTGAGCATGCCCTGCGGC
GATATCCGACTGGAGAAGAAAGATGCATTGCTTGTAAACTCTGTGAAGCT
GTATGCCCCGCACAAGCAATCACAATAGAAGCAGAGGAAAGAGAAGATGG
AAGCCGTAGGACGACCAGGTATGATATTGACATGACCAAGTGCATCTACT
GTGGATTCT
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