FC930664

Overview
NameFC930664
Unique NameFC930664
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930664_ssr585 microsatellite FC930664_ssr585:585..596. BLAST: Citrus ESTs to SwissProt
Ccv1_Contig15260 contig Ccv1_Contig15260:3..701. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
[Close]
BLAST of FC930664 vs. ExPASy Swiss-Prot
Match: DAN4_YEAST (Cell wall protein DAN4 OS=Saccharomyces cerevisiae GN=DAN4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 53/182 (29.12%), Postives = 87/182 (47.80%), Query Frame = 2 
Query:  134 SSPAKEISTTSSISPLPLHVSPTTEASLSFPTTDAGLSFPTTDAGLSFPTTAQETIRIQVSSATNSSLPFPTTEASLSFPTTDAGLSFPATGSGLPFPTT--TQETIQIQVSSATNSSLPFPTTDSGLSFPTTAQETIRIQVSSATNSSLPFPTTTKETIQI*VSSATNSSLPFPTTNAGLS 673
            ++P   I++T+S +      +PTT  + + PTT    + PTT    + PTT+  +     +  T+++   PTT  + + PTT    + P T +    PTT  T  T     +S T++    PTT S  + PTT+        S+A  +S    T+T  TI    +++T SS  F T++A  S
Sbjct:  136 TTPTTTITSTTSTTS----TTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTS----TTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTPTTSTTSTTSQTSTKSTTPTTSSTSTTPTTSTTPTTSTTSTAPTTSTTSTTSTTSTISTAPTTSTTSS-TFSTSSASAS 308
The following BLAST results are available for this feature:
BLAST of FC930664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DAN4_YEAST2.879e-1129.12Cell wall protein DAN4 OS=Saccharomyces cerevisiae... [more]
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Properties
Property NameValue
Genbank descriptionC34009H12EF PostHarvC1 Citrus clementina cDNA clone C34009H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930664 ID=FC930664; Name=FC930664; organism=Citrus clementina; type=EST; length=699bp
ACAAGCGAAACTCCTCTTGGTATTGAACGATGGGGTCCCAAATGGCCTAC
CTCTTTGCCACTCTTTTGGCAATCTCAGTCTCGCTTAGCTACTTGCCTTT
AGAAGCCTCCGCAGACCATTACTACTACACATCTCCTCCCCCGCCAAAGA
AATATCCACCACCAGTAGCATCTCCCCCTTACCATTACACGTCTCCCCCA
CCACCGAAGCCAGTTTATCATTCCCCACCACAGACGCCGGTTTATCATTC
CCCACCACCGACGCCGGTTTATCATTCCCCACCACCGCCCAAGAAACCAT
ACGAATACAAGTCTCCTCCGCCACCAACTCCAGTTTACCATTCCCCACCA
CCGAAGCCAGTTTATCATTCCCCACCACAGACGCCGGTTTATCATTCCCC
GCCACCGGTTCCGGTTTACCATTCCCCACCACCACCCAAGAAACCATACA
AATACAAGTCTCCTCCGCCACCAACTCCAGTTTACCATTCCCCACCACCG
ACTCCGGTTTATCATTCCCCACCACCGCCCAAGAAACCATACGAATACAA
GTCTCCTCCGCCACCAACTCCAGTTTACCATTCCCCACCACCACCAAAGA
AACCATACAAATATAAGTCTCCTCCGCCACCAACTCCAGTTTACCATTCC
CCACCACCAACGCCGGTTTATCATTCCCCACCACCTCCCNAGAAAACAT
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