FC930665

Overview
NameFC930665
Unique NameFC930665
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2037 contig Ccv1_Contig2037:141..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930665 vs. ExPASy Swiss-Prot
Match: ACT_GOSHI (Actin OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 451.055 bits (1159), Expect = 2.693e-126
Identity = 223/230 (96.96%), Postives = 227/230 (98.70%), Query Frame = 1 
Query:    7 GMVKVRFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPD 696
            GMVK  FAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKLAYIALDYEQELETSKTSS++EKSYELPD
Sbjct:   17 GMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETSKTSSSIEKSYELPD 246
[Close]
BLAST of FC930665 vs. ExPASy Swiss-Prot
Match: ACT12_ARATH (Actin-12 OS=Arabidopsis thaliana GN=ACT12 PE=1 SV=1)

HSP 1 Score: 449.899 bits (1156), Expect = 5.999e-126
Identity = 222/230 (96.52%), Postives = 227/230 (98.70%), Query Frame = 1 
Query:    7 GMVKVRFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPD 696
            GMVK  FAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD+LMKILTERGYSFTTTAEREIVRDMKEKL+YIALDYEQELETSKTSS+VEKS+ELPD
Sbjct:   17 GMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQELETSKTSSSVEKSFELPD 246
[Close]
BLAST of FC930665 vs. ExPASy Swiss-Prot
Match: ACT3_PEA (Actin-3 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 449.514 bits (1155), Expect = 7.835e-126
Identity = 222/230 (96.52%), Postives = 226/230 (98.26%), Query Frame = 1 
Query:    7 GMVKVRFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPD 696
            GMVK  FAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY+FTT+AEREIVRDMKEKLAYIALDYEQELET+KTSSAVEK+YELPD
Sbjct:   17 GMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDGLMKILTERGYTFTTSAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKTYELPD 246
[Close]
BLAST of FC930665 vs. ExPASy Swiss-Prot
Match: ACT1_SORBI (Actin-1 OS=Sorghum bicolor GN=AC1 PE=2 SV=1)

HSP 1 Score: 449.514 bits (1155), Expect = 7.835e-126
Identity = 222/230 (96.52%), Postives = 226/230 (98.26%), Query Frame = 1 
Query:    7 GMVKVRFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPD 696
            GMVK  FAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRDMKEKLAYIALDY+QE+ET+KTSS+VEKSYELPD
Sbjct:   17 GMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYDQEMETAKTSSSVEKSYELPD 246
[Close]
BLAST of FC930665 vs. ExPASy Swiss-Prot
Match: ACT11_SOLTU (Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1)

HSP 1 Score: 449.129 bits (1154), Expect = 1.023e-125
Identity = 222/230 (96.52%), Postives = 227/230 (98.70%), Query Frame = 1 
Query:    7 GMVKVRFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPD 696
            GMVK  FAGDDAPRAVFPSIVGRPRH+GVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD+LMKILTERGYSFTT+AEREIVRD+KEKLAYIALDYEQELETSKTSS+VEKSYELPD
Sbjct:   17 GMVKAGFAGDDAPRAVFPSIVGRPRHSGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYSFTTSAEREIVRDVKEKLAYIALDYEQELETSKTSSSVEKSYELPD 246
[Close]
BLAST of FC930665 vs. ExPASy Swiss-Prot
Match: ACT1_TOBAC (Actin OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 448.743 bits (1153), Expect = 1.337e-125
Identity = 221/230 (96.09%), Postives = 227/230 (98.70%), Query Frame = 1 
Query:    7 GMVKVRFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPD 696
            GMVK  FAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD+LMKILTERGYSFTTTAEREIVRD+KEKL+YIALD+EQE+ETSKTSS+VEKSYELPD
Sbjct:   17 GMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDVKEKLSYIALDFEQEMETSKTSSSVEKSYELPD 246
[Close]
BLAST of FC930665 vs. ExPASy Swiss-Prot
Match: ACT4_ARATH (Actin-4 OS=Arabidopsis thaliana GN=ACT4 PE=1 SV=1)

HSP 1 Score: 448.358 bits (1152), Expect = 1.746e-125
Identity = 221/230 (96.09%), Postives = 227/230 (98.70%), Query Frame = 1 
Query:    7 GMVKVRFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPD 696
            GMVK  FAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD+LMKILTERGYSFTTTAEREIVRDMKEKL+YIALD+EQELETSKTSS+VEKS+ELPD
Sbjct:   17 GMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDFEQELETSKTSSSVEKSFELPD 246
[Close]
BLAST of FC930665 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSJ (Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 448.358 bits (1152), Expect = 1.746e-125
Identity = 221/230 (96.09%), Postives = 226/230 (98.26%), Query Frame = 1 
Query:    7 GMVKVRFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPD 696
            GMVK  FAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRDMKEKL+YIALDY+QE+ET+KTSS+VEKSYELPD
Sbjct:   17 GMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYDQEMETAKTSSSVEKSYELPD 246
[Close]
BLAST of FC930665 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSI (Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 448.358 bits (1152), Expect = 1.746e-125
Identity = 221/230 (96.09%), Postives = 226/230 (98.26%), Query Frame = 1 
Query:    7 GMVKVRFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPD 696
            GMVK  FAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRDMKEKL+YIALDY+QE+ET+KTSS+VEKSYELPD
Sbjct:   17 GMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYDQEMETAKTSSSVEKSYELPD 246
[Close]
BLAST of FC930665 vs. ExPASy Swiss-Prot
Match: ACT3_SOLTU (Actin-58 OS=Solanum tuberosum GN=AC58 PE=3 SV=1)

HSP 1 Score: 447.588 bits (1150), Expect = 2.977e-125
Identity = 221/230 (96.09%), Postives = 226/230 (98.26%), Query Frame = 1 
Query:    7 GMVKVRFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPD 696
            GMVK  FAGDDAPRAVFP IVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD+LMKILTERGYSFTTTAEREIVRD+KEKL+YIALD+EQELETSKTSS+VEKSYELPD
Sbjct:   17 GMVKAGFAGDDAPRAVFPRIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDVKEKLSYIALDFEQELETSKTSSSVEKSYELPD 246
The following BLAST results are available for this feature:
BLAST of FC930665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 478
Match NameE-valueIdentityDescription
ACT_GOSHI2.693e-12696.96Actin OS=Gossypium hirsutum PE=3 SV=1[more]
ACT12_ARATH5.999e-12696.52Actin-12 OS=Arabidopsis thaliana GN=ACT12 PE=1 SV=... [more]
ACT3_PEA7.835e-12696.52Actin-3 OS=Pisum sativum PE=2 SV=1[more]
ACT1_SORBI7.835e-12696.52Actin-1 OS=Sorghum bicolor GN=AC1 PE=2 SV=1[more]
ACT11_SOLTU1.023e-12596.52Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1[more]
ACT1_TOBAC1.337e-12596.09Actin OS=Nicotiana tabacum PE=3 SV=1[more]
ACT4_ARATH1.746e-12596.09Actin-4 OS=Arabidopsis thaliana GN=ACT4 PE=1 SV=1[more]
ACT1_ORYSJ1.746e-12596.09Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE... [more]
ACT1_ORYSI1.746e-12596.09Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2... [more]
ACT3_SOLTU2.977e-12596.09Actin-58 OS=Solanum tuberosum GN=AC58 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34010A01EF PostHarvC1 Citrus clementina cDNA clone C34010A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930665 ID=FC930665; Name=FC930665; organism=Citrus clementina; type=EST; length=697bp
AGAAAGGGAATGGTTAAGGTTCGGTTTGCCGGAGATGATGCTCCACGGGC
GGTGTTCCCCAGTATTGTTGGTCGTCCACGTCACACTGGTGTGATGGTTG
GCATGGGTCAGAAGGATGCGTATGTTGGTGATGAGGCTCAATCGAAGAGA
GGTATTTTGACTTTGAAATACCCCATTGAGCATGGTATTGTGAGCAACTG
GGATGACATGGAGAAGATCTGGCATCACACCTTCTACAATGAGCTTCGTG
TTGCCCCTGAAGAGCACCCTGTTCTTCTTACTGAGGCTCCTCTCAATCCG
AAGGCTAATCGCGAGAAGATGACCCAGATTATGTTTGAGACCTTTAATGC
TCCCGCTATGTATGTTGCCATCCAGGCCGTTCTTTCCTTGTATGCGAGTG
GTCGTACCACTGGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCATACA
GTTCCTATATATGAGGGTTATGCCCTCCCACATGCAATACTTCGTCTTGA
CCTTGCTGGTCGTGACCTCACTGATAACTTGATGAAAATCCTCACTGAGC
GTGGGTACTCTTTCACCACCACGGCGGAGCGTGAAATTGTCAGGGACATG
AAGGAAAAGCTGGCTTACATCGCTCTTGACTATGAACAGGAGCTTGAGAC
CTCCAAGACCAGCTCTGCAGTTGAGAAGAGCTATGAGCTGCCTGATG
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