FC930680

Overview
NameFC930680
Unique NameFC930680
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15202 contig Ccv1_Contig15202:1..649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930680 vs. ExPASy Swiss-Prot
Match: U183_ARATH (UPF0183 protein At3g51130 OS=Arabidopsis thaliana GN=At3g51130 PE=2 SV=2)

HSP 1 Score: 338.576 bits (867), Expect = 1.710e-92
Identity = 156/185 (84.32%), Postives = 168/185 (90.81%), Query Frame = 1
Query:   94 LQSQKPRRRCEGTGMGAIVLDLRPGVGIGPFSLGMPICKAFASIEQQPNIYDVVHVKYFDEEPLKLDIVISFPDHGFHLRFDPWTQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAHYADCCQDREAELPLEFPDGTTPVTCRVSIY 648
            L  Q+PRRR EGT MGA V DLRPGVGIGPFS+GMPIC+AFA IEQQPNIYDVVHVKY+DE+PLKLD+VISFPDHGFHLRFDPW+QRLRL+EIFD+KRLQMRYATS+IGG STLATFVAVYALFGPTFPG+YDKER +Y LFYPGLSF FPIP  Y DCC D EA LPLEFPDGTTPVTCRVSIY
Sbjct:   11 LVMQRPRRRLEGTAMGATVFDLRPGVGIGPFSIGMPICEAFAQIEQQPNIYDVVHVKYYDEDPLKLDVVISFPDHGFHLRFDPWSQRLRLVEIFDVKRLQMRYATSMIGGPSTLATFVAVYALFGPTFPGIYDKERGIYSLFYPGLSFEFPIPNQYTDCCHDGEAALPLEFPDGTTPVTCRVSIY 195          
BLAST of FC930680 vs. ExPASy Swiss-Prot
Match: U183_DROME (UPF0183 protein CG7083 OS=Drosophila melanogaster GN=CG7083 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.999e-21
Identity = 61/174 (35.06%), Postives = 91/174 (52.30%), Query Frame = 1
Query:  151 LDLRPGVGIG----PFSLGMPICKAFASIEQQPNIYDVVHVKYFDEEPLKLDIVISFPDHGFHLRFDPWTQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAH----YADCCQDREAELPLEFPDGTTPVTCRVSIY 648
            L++ P + +G     F LGM   +A A I+ Q  I   V V Y D  PL +DI+I+ P  G  L FDP +QRL+ IE+F++K +++RY          L +   +   FG T PGVYD  + ++ L + GLSF FP+ +     YA           L F +G +PV  ++S+Y
Sbjct:    4 LEIVPEISLGCDAWEFVLGMHFSQAIAIIQSQVGIIKGVQVLYSDTTPLGVDIIINLPQDGVRLIFDPVSQRLKTIEVFNMKLVKLRYFGVYFNSPEVLPSIEQIEHSFGATHPGVYDAAKQLFALHFRGLSFYFPVDSKLHSGYAHGLSS------LVFLNGASPVVSKMSLY 171          
BLAST of FC930680 vs. ExPASy Swiss-Prot
Match: U183_CAEEL (UPF0183 protein T01G9.2 OS=Caenorhabditis elegans GN=T01G9.2 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.383e-17
Identity = 44/121 (36.36%), Postives = 68/121 (56.20%), Query Frame = 1
Query:  184 FSLGMPICKAFASIEQQPNIYDVVHVKYFDEEPLKLDIVISFPDHGFHLRFDPWTQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFP 546
            F LGMPI +  A I+Q P +   V +KY  ++P   DI+I     G  L FD  +Q ++LIE+ ++  + + Y  ++    + +AT   V   FG T PG YD + ++Y+  +PGLSF FP
Sbjct:   37 FVLGMPINQCIAMIQQHPRMLTKVELKYSKKDPFYQDIIIYIGSTGIRLYFDGLSQLIKLIEVDNLSMITLTYNDTIFSDPNNMATLDRVNEFFGSTHPGSYDDKHNIYVQSWPGLSFCFP 157          
BLAST of FC930680 vs. ExPASy Swiss-Prot
Match: CP070_RAT (UPF0183 protein C16orf70 homolog OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.811e-16
Identity = 39/122 (31.97%), Postives = 70/122 (57.38%), Query Frame = 1
Query:  184 FSLGMPICKAFASIEQQPNIYDVVHVKYFDEEPLKLDIVISFPDHGFHLRFDPWTQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPI 549
            F+LGMP+ +A A +++   I   V V Y ++ PL  D++++    G  L FD + QRL++IE++D+ +++++Y        +   T   +   FG T PGVY+    ++ L + GLSF+F +
Sbjct:   19 FTLGMPLAQAVAILQKHCRIIKNVQVLYSEQSPLSHDLILNLTQDGIKLLFDAFNQRLKVIEVYDLTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNSAEQLFHLNFRGLSFSFQL 140          
BLAST of FC930680 vs. ExPASy Swiss-Prot
Match: CP070_HUMAN (UPF0183 protein C16orf70 OS=Homo sapiens GN=C16orf70 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.691e-15
Identity = 39/122 (31.97%), Postives = 69/122 (56.56%), Query Frame = 1
Query:  184 FSLGMPICKAFASIEQQPNIYDVVHVKYFDEEPLKLDIVISFPDHGFHLRFDPWTQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPI 549
            F+LGMP+ +A A +++   I   V V Y ++ PL  D++++    G  L FD + QRL++IE+ D+ +++++Y        +   T   +   FG T PGVY+    ++ L + GLSF+F +
Sbjct:   19 FTLGMPLAQAVAILQKHCRIIKNVQVLYSEQSPLSHDLILNLTQDGIKLMFDAFNQRLKVIEVCDLTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNSAEQLFHLNFRGLSFSFQL 140          
BLAST of FC930680 vs. ExPASy Swiss-Prot
Match: CP070_MOUSE (UPF0183 protein C16orf70 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.096e-14
Identity = 38/122 (31.15%), Postives = 69/122 (56.56%), Query Frame = 1
Query:  184 FSLGMPICKAFASIEQQPNIYDVVHVKYFDEEPLKLDIVISFPDHGFHLRFDPWTQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPI 549
            F+LGMP+ +A A +++   I   V V Y ++ PL  D++++    G  L FD + QRL++IE+ ++ +++++Y        +   T   +   FG T PGVY+    ++ L + GLSF+F +
Sbjct:   19 FTLGMPLAQAVAILQKHCRIIRNVQVLYSEQSPLSHDLILNLTQDGITLLFDAFNQRLKVIEVCELTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNSTEQLFHLNFRGLSFSFQL 140          
The following BLAST results are available for this feature:
BLAST of FC930680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
U183_ARATH1.710e-9284.32UPF0183 protein At3g51130 OS=Arabidopsis thaliana ... [more]
U183_DROME5.999e-2135.06UPF0183 protein CG7083 OS=Drosophila melanogaster ... [more]
U183_CAEEL1.383e-1736.36UPF0183 protein T01G9.2 OS=Caenorhabditis elegans ... [more]
CP070_RAT5.811e-1631.97UPF0183 protein C16orf70 homolog OS=Rattus norvegi... [more]
CP070_HUMAN1.691e-1531.97UPF0183 protein C16orf70 OS=Homo sapiens GN=C16orf... [more]
CP070_MOUSE1.096e-1431.15UPF0183 protein C16orf70 homolog OS=Mus musculus P... [more]
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Properties
Property NameValue
Genbank descriptionC34010B06EF PostHarvC1 Citrus clementina cDNA clone C34010B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930680 ID=FC930680; Name=FC930680; organism=Citrus clementina; type=EST; length=649bp
GGAATTGCTTTCGCGGACTTAACGGAGTATTTCCTTAACCGAAGAAAAGG
GGAAAAAAAAAACCTAACAAAATCCAGAATCCAAATCCAAATGTTACAGA
GCCAGAAACCCCGTCGACGTTGCGAGGGCACGGGCATGGGCGCCATCGTT
CTCGATCTTCGACCTGGCGTCGGCATCGGTCCCTTTTCTCTCGGGATGCC
GATTTGCAAAGCATTTGCTTCAATAGAACAACAGCCTAACATCTATGATG
TTGTCCATGTGAAGTACTTTGATGAGGAACCACTGAAGCTTGATATCGTT
ATTAGCTTTCCAGATCATGGATTTCATCTTCGTTTTGATCCATGGACTCA
GAGATTACGCCTTATTGAAATATTTGATATCAAACGGCTTCAAATGCGTT
ATGCCACTTCGTTGATTGGGGGATCATCAACTCTAGCTACTTTTGTGGCG
GTATATGCACTATTTGGGCCAACCTTTCCTGGAGTTTACGACAAAGAAAG
AAGTGTTTATATGCTATTCTACCCAGGGCTGTCTTTTGCTTTTCCAATTC
CAGCTCACTATGCAGATTGCTGCCAGGATAGAGAAGCTGAACTGCCCTTA
GAGTTTCCTGATGGCACTACGCCTGTTACATGCCGAGTCTCTATATATG
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