FC930688

Overview
NameFC930688
Unique NameFC930688
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930688 vs. ExPASy Swiss-Prot
Match: CAND1_MOUSE (Cullin-associated NEDD8-dissociated protein 1 OS=Mus musculus GN=Cand1 PE=2 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 6.192e-46
Identity = 106/225 (47.11%), Postives = 143/225 (63.56%), Query Frame = 1
Query:   19 KQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPALKXXXXXXXXXXXXXXXIAIKYSIVERPEKIDEIIFPEISSFL 693
            KQ+ YSIA+CVA L  A   +  +   + + D+ K+  ST+S +  LALL LGE+G   DLS    +++VI+E+F SP EE+KSAASYALG+I+VGNL ++LPF+L +I +Q K+QYLLLHSLKE+I   SV   +     VE I  LL  HCE  EEG RNVVAECLGK+ LI+P  L+P LK                A+K++I + P+ ID ++   I  FL
Sbjct:  793 KQSYYSIAKCVAALTRACPKEGPAVVGQFIQDV-KNSRSTDSIRL-LALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVAGLK---PYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFL 1012          
BLAST of FC930688 vs. ExPASy Swiss-Prot
Match: CAND1_RAT (Cullin-associated NEDD8-dissociated protein 1 OS=Rattus norvegicus GN=Cand1 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.087e-46
Identity = 106/225 (47.11%), Postives = 143/225 (63.56%), Query Frame = 1
Query:   19 KQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPALKXXXXXXXXXXXXXXXIAIKYSIVERPEKIDEIIFPEISSFL 693
            KQ+ YSIA+CVA L  A   +  +   + + D+ K+  ST+S +  LALL LGE+G   DLS    +++VI+E+F SP EE+KSAASYALG+I+VGNL ++LPF+L +I +Q K+QYLLLHSLKE+I   SV   +     VE I  LL  HCE  EEG RNVVAECLGK+ LI+P  L+P LK                A+K++I + P+ ID ++   I  FL
Sbjct:  793 KQSYYSIAKCVAALTRACPKEGPAVVGQFIQDV-KNSRSTDSIRL-LALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLK---PYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFL 1012          
BLAST of FC930688 vs. ExPASy Swiss-Prot
Match: CAND1_PONAB (Cullin-associated NEDD8-dissociated protein 1 OS=Pongo abelii GN=CAND1 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.087e-46
Identity = 106/225 (47.11%), Postives = 143/225 (63.56%), Query Frame = 1
Query:   19 KQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPALKXXXXXXXXXXXXXXXIAIKYSIVERPEKIDEIIFPEISSFL 693
            KQ+ YSIA+CVA L  A   +  +   + + D+ K+  ST+S +  LALL LGE+G   DLS    +++VI+E+F SP EE+KSAASYALG+I+VGNL ++LPF+L +I +Q K+QYLLLHSLKE+I   SV   +     VE I  LL  HCE  EEG RNVVAECLGK+ LI+P  L+P LK                A+K++I + P+ ID ++   I  FL
Sbjct:  793 KQSYYSIAKCVAALTRACPKEGPAVVGQFIQDV-KNSRSTDSIRL-LALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLK---PYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFL 1012          
BLAST of FC930688 vs. ExPASy Swiss-Prot
Match: CAND1_HUMAN (Cullin-associated NEDD8-dissociated protein 1 OS=Homo sapiens GN=CAND1 PE=1 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 8.087e-46
Identity = 106/225 (47.11%), Postives = 143/225 (63.56%), Query Frame = 1
Query:   19 KQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPALKXXXXXXXXXXXXXXXIAIKYSIVERPEKIDEIIFPEISSFL 693
            KQ+ YSIA+CVA L  A   +  +   + + D+ K+  ST+S +  LALL LGE+G   DLS    +++VI+E+F SP EE+KSAASYALG+I+VGNL ++LPF+L +I +Q K+QYLLLHSLKE+I   SV   +     VE I  LL  HCE  EEG RNVVAECLGK+ LI+P  L+P LK                A+K++I + P+ ID ++   I  FL
Sbjct:  793 KQSYYSIAKCVAALTRACPKEGPAVVGQFIQDV-KNSRSTDSIRL-LALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLK---PYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFL 1012          
BLAST of FC930688 vs. ExPASy Swiss-Prot
Match: CAND1_BOVIN (Cullin-associated NEDD8-dissociated protein 1 OS=Bos taurus GN=CAND1 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.087e-46
Identity = 106/225 (47.11%), Postives = 143/225 (63.56%), Query Frame = 1
Query:   19 KQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPALKXXXXXXXXXXXXXXXIAIKYSIVERPEKIDEIIFPEISSFL 693
            KQ+ YSIA+CVA L  A   +  +   + + D+ K+  ST+S +  LALL LGE+G   DLS    +++VI+E+F SP EE+KSAASYALG+I+VGNL ++LPF+L +I +Q K+QYLLLHSLKE+I   SV   +     VE I  LL  HCE  EEG RNVVAECLGK+ LI+P  L+P LK                A+K++I + P+ ID ++   I  FL
Sbjct:  793 KQSYYSIAKCVAALTRACPKEGPAVVGQFIQDV-KNSRSTDSIRL-LALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLK---PYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFL 1012          
BLAST of FC930688 vs. ExPASy Swiss-Prot
Match: CAND1_DICDI (Cullin-associated NEDD8-dissociated protein 1 OS=Dictyostelium discoideum GN=cand1 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.864e-42
Identity = 97/231 (41.99%), Postives = 143/231 (61.90%), Query Frame = 1
Query:   13 VAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQ--DSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPALKXXXXXXXXXXXXXXXIAIKYSIVERPEKIDEIIFPEISSFLML 699
            V +Q+ +SI+QC+AV+ +         T+  L   L   SS N     L+L CLGEIGRR D+  +E+++  + ++F++  EEIK  A+  LG+IAV +L  +LPFIL+QI NQ KKQYLLLH+L+E IV+ S      +     ++ IL LLF++C +EEEG RN+VAECLGK+++IEP +++P L                 +IK+SI+E  E +D+ + P IS FL L
Sbjct:  793 VTRQSFHSISQCIAVITVNTTPALRKQTIHNLICNL---SSVNEPLVLLSLSCLGEIGRRIDIHENENLQESVYKTFEANNEEIKQVAALCLGDIAVCSLQSYLPFILEQIKNQPKKQYLLLHTLRETIVKLSHTDEGIKTIHPFLQSILPLLFDNCVNEEEGTRNIVAECLGKLSMIEPNEIIPKLVEKIKSPSPLERSTIVTSIKFSIMENKEVVDQYLAPNISQFLSL 1020          
BLAST of FC930688 vs. ExPASy Swiss-Prot
Match: CAND2_HUMAN (Cullin-associated NEDD8-dissociated protein 2 OS=Homo sapiens GN=CAND2 PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 7.586e-36
Identity = 83/228 (36.40%), Postives = 128/228 (56.14%), Query Frame = 1
Query:   10 GVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPALKXXXXXXXXXXXXXXXIAIKYSIVERPEKIDEIIFPEISSFL 693
            G+ KQ  +S+A+CVA L  A   +  S+  +++ D     SST    + LA L L E+G+         ++ V++E+  SP E++++AASYALG +  G+L  FLPF+L+QI+ + ++QYLLLHSL+E +     D  +      E I  LLF  CE  EEG R VVAEC+GK+ L+ P+ L+P L+                A+K+ I ++P  ID ++   I  F+
Sbjct:  795 GLHKQVFHSLARCVAALSAACPQEAASTASRLVCDARSPHSSTGV--KVLAFLSLAEVGQVAGPGHQRELKAVLLEALGSPSEDVRAAASYALGRVGAGSLPDFLPFLLEQIEAEPRRQYLLLHSLREALGAAQPDSLK---PYAEDIWALLFQRCEGAEEGTRGVVAECIGKLVLVNPSFLLPRLRKQLAAGRPHTRSTVITAVKFLISDQPHPIDPLLKSFIGEFM 1017          
BLAST of FC930688 vs. ExPASy Swiss-Prot
Match: CAND2_MOUSE (Cullin-associated NEDD8-dissociated protein 2 OS=Mus musculus GN=Cand2 PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 4.917e-35
Identity = 81/228 (35.53%), Postives = 126/228 (55.26%), Query Frame = 1
Query:   10 GVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPALKXXXXXXXXXXXXXXXIAIKYSIVERPEKIDEIIFPEISSFL 693
            G+ KQ  +S+A+CVA L  A   +   +  +++ D     SST    + LA L L E+G+         ++ V++E+  SP E++++AA+YALG +  GNL  FLPF+L QI+ Q ++QYLLLH+L+E +     D  +     VE +  LLF  CES EEG R VVAEC+GK+  + P  L+P  +                A+K+ I ++P  ID ++   I+ F+
Sbjct:  794 GLHKQVFHSLARCVAALSAACPQEAAGTASRLVCDAKSPHSSTGV--KVLAFLSLAEVGQVAGPGPQRELKTVLLEALGSPSEDVRAAAAYALGRVGAGNLPDFLPFLLAQIEAQPRRQYLLLHALREALGAAQPDNLK---PYVEDVWALLFQRCESPEEGTRCVVAECIGKLVFVNPPYLLPRFRKQLAAGQPYTRSTVITAVKFLISDQPHSIDPLLKSFIAEFM 1016          
BLAST of FC930688 vs. ExPASy Swiss-Prot
Match: CAND2_RAT (Cullin-associated NEDD8-dissociated protein 2 OS=Rattus norvegicus GN=Cand2 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.422e-35
Identity = 81/228 (35.53%), Postives = 126/228 (55.26%), Query Frame = 1
Query:   10 GVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPALKXXXXXXXXXXXXXXXIAIKYSIVERPEKIDEIIFPEISSFL 693
            G+ KQ  +S+A+CVA L  A   +   +  +++ D     SST    + LA L L E+G+         ++ V++E+  SP E++++AA+YALG +  GNL  FLPF+L QI+ Q ++QYLLLH+L+E +     D  +     VE +  LLF  CES EEG R VVAEC+GK+  + P  L+P  +                A+K+ I ++P  ID ++   I+ F+
Sbjct:  832 GLHKQVFHSLARCVAALSAACPQEAAGTASRLVCDARSPHSSTGV--KVLAFLSLAEVGQVAGPGPQRELKTVLLEALGSPSEDVRAAAAYALGRVGAGNLPDFLPFLLAQIEAQPRRQYLLLHALREALGAAQPDNLK---PYVEDVWALLFQRCESPEEGTRCVVAECIGKLVFVNPPFLLPRFRKQLAAGQPYTRSTVITAVKFLISDQPHSIDPLLKSFIAEFM 1054          
The following BLAST results are available for this feature:
BLAST of FC930688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
CAND1_MOUSE6.192e-4647.11Cullin-associated NEDD8-dissociated protein 1 OS=M... [more]
CAND1_RAT8.087e-4647.11Cullin-associated NEDD8-dissociated protein 1 OS=R... [more]
CAND1_PONAB8.087e-4647.11Cullin-associated NEDD8-dissociated protein 1 OS=P... [more]
CAND1_HUMAN8.087e-4647.11Cullin-associated NEDD8-dissociated protein 1 OS=H... [more]
CAND1_BOVIN8.087e-4647.11Cullin-associated NEDD8-dissociated protein 1 OS=B... [more]
CAND1_DICDI1.864e-4241.99Cullin-associated NEDD8-dissociated protein 1 OS=D... [more]
CAND2_HUMAN7.586e-3636.40Cullin-associated NEDD8-dissociated protein 2 OS=H... [more]
CAND2_MOUSE4.917e-3535.53Cullin-associated NEDD8-dissociated protein 2 OS=M... [more]
CAND2_RAT6.422e-3535.53Cullin-associated NEDD8-dissociated protein 2 OS=R... [more]
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Properties
Property NameValue
Genbank descriptionC34010C02EF PostHarvC1 Citrus clementina cDNA clone C34010C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930688 ID=FC930688; Name=FC930688; organism=Citrus clementina; type=EST; length=701bp
CAGTCGGGTGGTGTTGCAAAACAGGCTATGTACTCAATAGCCCAGTGCGT
AGCTGTTCTCTGCCTGGCTGCTGGTGATCAGAAGTGCTCATCCACTGTGA
AGATGCTTACCGACATCCTTAAAGATGACAGCAGCACTAATTCTGCCAAG
CAGCACCTTGCCTTGCTATGTCTGGGGGAGATTGGGAGAAGGAAAGATCT
GAGCTCGCATGAGCATATAGAAAATGTTATTATCGAGTCTTTCCAGTCTC
CTTTTGAAGAGATAAAGTCTGCCGCTTCTTATGCTCTTGGGAACATAGCC
GTTGGTAATTTATCCAAGTTTTTACCCTTTATCTTGGACCAGATCGATAA
CCAGCAGAAGAAACAATATCTCTTGCTTCATTCTCTGAAGGAGGTTATAG
TAAGGCAATCTGTAGATAAAGCAGAGTTCCAGGATTCTAGTGTTGAGAAG
ATACTTAATCTACTATTTAATCATTGCGAAAGTGAGGAAGAGGGTGTCCG
CAATGTAGTAGCTGAGTGCTTGGGTAAAATTGCGCTTATTGAACCAGCAA
AACTAGTTCCTGCACTCAAGGTGCGAACAACCAGTTCAGCTGCATTTACT
AGAGCAACAGTTGTTATAGCAATAAAATATTCTATAGTTGAGCGGCCTGA
GAAGATAGATGAGATTATATTCCCTGAAATCTCATCATTCCTTATGCTTA
T
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