FC930693

Overview
NameFC930693
Unique NameFC930693
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930693 vs. ExPASy Swiss-Prot
Match: SCAM4_ARATH (Secretory carrier-associated membrane protein 4 OS=Arabidopsis thaliana GN=SCAMP4 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.012e-48
Identity = 95/158 (60.13%), Postives = 111/158 (70.25%), Query Frame = 1
Query:  208 MNRHHDPNPFDEEE--VNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXXXXXXGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWLGIVLCLAFNVIAVIVCWIKAEVSNLF 675
            MNRHHDPNPFDE+E  VNPFS G        +VP+  S P+ +GQ   ATVDIPLDNMN+  +K+R+LA WEA+L                 GV  DD+NWPPFFPIIHHDI+KEIP+HAQ+LQYLAFASWLGIVLCL FNVIA +VCWIK     +F
Sbjct:    1 MNRHHDPNPFDEDEEIVNPFSKGGG------RVPAA-SRPVEYGQSLDATVDIPLDNMNDSSQKQRKLADWEAELRKKEMDIKRREEAIAKFGVQIDDKNWPPFFPIIHHDIAKEIPVHAQKLQYLAFASWLGIVLCLVFNVIATMVCWIKGGGVKIF 151          
BLAST of FC930693 vs. ExPASy Swiss-Prot
Match: SCAM6_ORYSJ (Secretory carrier-associated membrane protein 6 OS=Oryza sativa subsp. japonica GN=SCAMP6 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.506e-44
Identity = 92/159 (57.86%), Postives = 103/159 (64.78%), Query Frame = 1
Query:  217 HHDPNPFDEEEV--NPFSNGPAAPA---SRSQVPSVTSEPIGFGQKYG-ATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXXXXXXGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWLGIVLCLAFNVIAVIVCWIKAEVSNLF 675
            HHDPNPFDE     NPFSNG        SR Q     +EP GFG   G ATVD+PLD M + K K REL+SWE DL                 GVP +D+NWPPFFPIIHHDI+ EIP + Q+LQYLAFASWLGIVLCL++N IAVIVCWIK   S LF
Sbjct:    2 HHDPNPFDEGNADDNPFSNGGGGGGGGGSRQQYGFRPTEPAGFGAGRGDATVDVPLDTMGDSKSKARELSSWETDLKRREADIKRREEALRNAGVPMEDKNWPPFFPIIHHDIANEIPANLQKLQYLAFASWLGIVLCLSWNFIAVIVCWIKEGDSKLF 160          
BLAST of FC930693 vs. ExPASy Swiss-Prot
Match: SCAM5_ORYSJ (Secretory carrier-associated membrane protein 5 OS=Oryza sativa subsp. japonica GN=SCAMP5 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.565e-41
Identity = 92/168 (54.76%), Postives = 105/168 (62.50%), Query Frame = 1
Query:  217 HHDPNPFDE-EEVNPFSNGPAAPASR--------------SQVPSVTSEPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXXXXXXGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWLGIVLCLAFNVIAVIVCWIKAEVSNLF 675
            HHDPNPFDE  + NPFSNG    A R              SQ  S     +G G K GATVDIPLDNM++ K K +EL  WEADL                 GVP +++NWPPFFPIIHHDI+ EIP +AQ+LQYLAFASWLGIVLCL +N IAVIVCWI+   S LF
Sbjct:    2 HHDPNPFDEGADDNPFSNGGGGGARRGGGGGGGGGGGGGKSQF-SFGFGGLGGGSKGGATVDIPLDNMSDSKGKGKELLQWEADLKRREADIRRREEALKSAGVPMEEKNWPPFFPIIHHDIANEIPANAQKLQYLAFASWLGIVLCLFWNFIAVIVCWIRGGDSKLF 168          
BLAST of FC930693 vs. ExPASy Swiss-Prot
Match: SCAM2_ORYSJ (Secretory carrier-associated membrane protein 2 OS=Oryza sativa subsp. japonica GN=SCAMP2 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.763e-38
Identity = 77/149 (51.68%), Postives = 98/149 (65.77%), Query Frame = 1
Query:  208 MNRHHDPNPFDEEEVNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXXXXXXGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWLGIVLCLAFNVIAVIVCWIK 654
            M   +D NPFDE++VNPF+ G   PAS S++P +  EP GF    GATVDIPLD+  + KKKE+EL + EA+L                 G+  +++NWPPFFPIIHHDIS EIPIH QR+QYLAF+S LG+  CL +N+IA    WIK
Sbjct:    1 MAGRYDRNPFDEDDVNPFAGGSVPPASNSRMPPLPHEP-GFYNDRGATVDIPLDSTKDMKKKEKELQAKEAELNKRESELRRREEAASRAGIVIEEKNWPPFFPIIHHDISNEIPIHLQRMQYLAFSSLLGLAACLFWNIIATTAAWIK 148          
BLAST of FC930693 vs. ExPASy Swiss-Prot
Match: SCAM3_ARATH (Secretory carrier-associated membrane protein 3 OS=Arabidopsis thaliana GN=SCAMP3 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.411e-36
Identity = 78/155 (50.32%), Postives = 101/155 (65.16%), Query Frame = 1
Query:  208 MNRHHDPNPF-DEEEVNPFSNGPAAP-ASRSQVPSVTSEPIGFGQKYGATVDIPLDNMN--EPKKKERELASWEADLXXXXXXXXXXXXXXXXXGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWLGIVLCLAFNVIAVIVCWIKAE 660
            M   +DPNPF +EEEVNPF+N    P AS S++  +  EP+GF   YG TVDIPLD     + KKKE+EL + EA+L                 G+  + +NWPPFFP+IHHDI+ EIP+H QRLQY+ FA++LG+VLCL +N+IAV   WIK E
Sbjct:    1 MANRYDPNPFAEEEEVNPFANARGVPPASNSRLSPLPPEPVGFD--YGRTVDIPLDRAGTQDLKKKEKELQAKEAELKRREQDLKRKEDAAARAGIVIEVKNWPPFFPLIHHDIANEIPVHLQRLQYVTFATYLGLVLCLFWNIIAVTTAWIKGE 153          
BLAST of FC930693 vs. ExPASy Swiss-Prot
Match: SCAM_PEA (Secretory carrier-associated membrane protein OS=Pisum sativum GN=PSAM2 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.826e-36
Identity = 74/152 (48.68%), Postives = 97/152 (63.82%), Query Frame = 1
Query:  208 MNRHHDPNPFDEEEVNPFSNG-PAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXXXXXXGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWLGIVLCLAFNVIAVIVCWIKAE 660
            M   +DPNPFDEE+VNPFSN   AA A+ S+   +  +   +   +G TVDIPLD   + KKKER+L + EA+L                 G+  +++NWPPFFPIIHHDI+ EIPIH + LQY+AF S LG+VLCL +NV++V   WIK E
Sbjct:    1 MAGRYDPNPFDEEQVNPFSNPRSAASATNSRPAPLNPDRADYNYGFGPTVDIPLDTSTDGKKKERDLQAKEAELRKREQEVRRKEEAIARAGIVIEEKNWPPFFPIIHHDITNEIPIHLRTLQYVAFFSLLGLVLCLTWNVVSVTAAWIKGE 152          
BLAST of FC930693 vs. ExPASy Swiss-Prot
Match: SCAM3_ORYSJ (Secretory carrier-associated membrane protein 3 OS=Oryza sativa subsp. japonica GN=SCAMP3 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.392e-34
Identity = 67/147 (45.58%), Postives = 94/147 (63.95%), Query Frame = 1
Query:  220 HDPNPFDEEEVNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXXXXXXGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWLGIVLCLAFNVIAVIVCWIKAE 660
            H  N F++++VNPF+ G   PA+ S++P ++ EP  F       VDIPLD+  + KKKE+EL + EA+L                 G+  +D+NWPPFFP+IHH+IS EIPIH QR+QYLAF+S+LG+  CL +N+IA    W+K E
Sbjct:    5 HGRNGFEDDDVNPFAGGSVPPANNSRLPPLSHEPADF-----YNVDIPLDSSKDLKKKEKELQAMEAELNKRERELKRKEEAAAQAGIVIEDKNWPPFFPLIHHNISNEIPIHLQRMQYLAFSSFLGLAACLFWNIIATTTAWVKGE 146          
BLAST of FC930693 vs. ExPASy Swiss-Prot
Match: SCAM2_ARATH (Secretory carrier-associated membrane protein 2 OS=Arabidopsis thaliana GN=SCAMP2 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.958e-32
Identity = 70/148 (47.30%), Postives = 93/148 (62.84%), Query Frame = 1
Query:  220 HDPNPFDEEEVNPFSNGPAAP-ASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXXXXXXGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWLGIVLCLAFNVIAVIVCWIKAE 660
            HDPNPF +EE+NPF+N  + P AS S +  +  EP       GATVDIPLD+ N+ + KE EL + E +L                 GV  +++NWP FFP+IHHDI  EIPIH Q++QY+AF + LG+V CL +N++AV V WIK E
Sbjct:    4 HDPNPFADEEINPFANHTSVPPASNSYLKPLPPEPYD----RGATVDIPLDSGNDLRAKEMELQAKENELKRKEQELKRREDAIARTGVVIEEKNWPEFFPLIHHDIPNEIPIHLQKIQYVAFTTLLGLVGCLLWNIVAVTVAWIKGE 147          
BLAST of FC930693 vs. ExPASy Swiss-Prot
Match: SCAM1_ARATH (Secretory carrier-associated membrane protein 1 OS=Arabidopsis thaliana GN=SCAMP1 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.958e-32
Identity = 66/147 (44.90%), Postives = 93/147 (63.27%), Query Frame = 1
Query:  220 HDPNPFDEEEVNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXXXXXXGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWLGIVLCLAFNVIAVIVCWIKAE 660
            +  + FD+ E+NPF+N  + PA+ S++  +  EP       GAT+DIPLD+  + K KE+EL   EA+L                 G+  +++NWPPFFP+IHHDIS EIPIH QR+QY+AF S LG+V+CL +N++AV   WIK E
Sbjct:    4 YQSHSFDDGEINPFANPTSVPAATSKLSPLPPEPYD----RGATMDIPLDSGKDLKAKEKELREKEAELKRREQEIKRKEDAIAQAGIVIEEKNWPPFFPLIHHDISNEIPIHLQRIQYVAFTSMLGLVVCLLWNIVAVTTAWIKGE 146          
BLAST of FC930693 vs. ExPASy Swiss-Prot
Match: SCAM5_ARATH (Secretory carrier-associated membrane protein 5 OS=Arabidopsis thaliana GN=SCAMP5 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.504e-31
Identity = 75/157 (47.77%), Postives = 97/157 (61.78%), Query Frame = 1
Query:  208 MNRHHDPNPFDEE-EVNPFSNGPAAPA-SRSQVPSVTSEPIGFGQKYGATVDIPLDN----MNEPKKKERELASWEADLXXXXXXXXXXXXXXXXXGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWLGIVLCLAFNVIAVIVCWIKAE 660
            M   +D N FDE+ EVNPF+N  + PA S S++  +  EP GFG  YG TVDIPLD       + KKKE+EL + EADL                 G+  + +NWP FFP+IHHDI+ EI +  QRLQY+AFA++LG+VL L +N+IAV   WIK E
Sbjct:    1 MGGRYDRNTFDEQDEVNPFANPGSVPAASNSRLSPLPPEPAGFG--YGRTVDIPLDRPGSGAQDLKKKEKELQAKEADLRRREQDLKRKQDAAARAGIVIEAKNWPTFFPLIHHDIANEILVRLQRLQYIAFATYLGLVLALFWNIIAVTTAWIKGE 155          
The following BLAST results are available for this feature:
BLAST of FC930693 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
SCAM4_ARATH1.012e-4860.13Secretory carrier-associated membrane protein 4 OS... [more]
SCAM6_ORYSJ7.506e-4457.86Secretory carrier-associated membrane protein 6 OS... [more]
SCAM5_ORYSJ1.565e-4154.76Secretory carrier-associated membrane protein 5 OS... [more]
SCAM2_ORYSJ2.763e-3851.68Secretory carrier-associated membrane protein 2 OS... [more]
SCAM3_ARATH4.411e-3650.32Secretory carrier-associated membrane protein 3 OS... [more]
SCAM_PEA9.826e-3648.68Secretory carrier-associated membrane protein OS=P... [more]
SCAM3_ORYSJ5.392e-3445.58Secretory carrier-associated membrane protein 3 OS... [more]
SCAM2_ARATH2.958e-3247.30Secretory carrier-associated membrane protein 2 OS... [more]
SCAM1_ARATH2.958e-3244.90Secretory carrier-associated membrane protein 1 OS... [more]
SCAM5_ARATH2.504e-3147.77Secretory carrier-associated membrane protein 5 OS... [more]

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Properties
Property NameValue
Genbank descriptionC34010C07EF PostHarvC1 Citrus clementina cDNA clone C34010C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930693 ID=FC930693; Name=FC930693; organism=Citrus clementina; type=EST; length=698bp
GAAGTAATGACGATACCTTTACAACTGATATCCCGCGTAGTGTACAAGCG
AAGATAAAAAGGTGAACGCTGAAGGCTGAAAGCACAGCACCGCACAGCAC
CAGCAGCAACTAATAGTAGTGTTAGTGAATTTGCGAAGTTAGGTGCAAAA
TTTAGGGATCTGAAAGAGAGAAAAAAAACCAAAAAAAGAAAAAAAAAACA
CGAATCAATGAATCGCCACCACGACCCAAATCCCTTCGATGAAGAAGAGG
TCAATCCATTTTCGAATGGCCCGGCTGCTCCCGCATCAAGGTCACAGGTT
CCTTCTGTGACATCTGAACCTATTGGATTTGGACAGAAATATGGGGCAAC
AGTTGATATTCCACTAGATAATATGAATGAGCCTAAGAAAAAAGAGAGAG
AGCTTGCATCATGGGAAGCAGATCTTAAAAGGAGGGAAAAGGAAATAAAA
CGAAGAGAAGAGGCTATTGCCAAAGCTGGCGTTCCCACAGACGATAGAAA
TTGGCCACCTTTTTTTCCAATTATTCATCATGACATATCGAAGGAGATAC
CAATTCATGCTCAAAGGCTGCAGTATCTTGCTTTTGCTAGTTGGTTAGGT
ATAGTTCTCTGTCTTGCATTCAATGTAATTGCCGTGATTGTCTGTTGGAT
TAAGGCGGAGGTGTCAAATCTTTTTCCTTGCACATTTATGCCTTGCTT
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