FC930694

Overview
NameFC930694
Unique NameFC930694
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC930694 vs. ExPASy Swiss-Prot
Match: NMCP_ARATH (Putative nuclear matrix constituent protein 1-like protein OS=Arabidopsis thaliana GN=At5g65770 PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 4.323e-77
Identity = 138/221 (62.44%), Postives = 192/221 (86.88%), Query Frame = 2 
Query:   74 ASPSSGRLSITPSSRVLQSPLSDESIWKRLKEAGLDEESIKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDQASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHASESLQAEANRYHRSAERKLQDVVAREDDLSRRIASFKADCXRKEREI 736
            ++ ++ RL+ITP+SRVL+SPL++E +WKRLK+AG DE+SIK RDKAALIAYIAKLE+E++++QH+MGLL+LEK EL+S+YE+IKAS + ++L    ++++++SA+AEA+KREESLKK +G+ KECI+SLEK +HE+RAE AETKV+A S  +EA  M+E+A KK A+AEAK+ A+E+LQAEANRYHR AERKL++V +REDDL+RR+ASFK++C  KE E+
Sbjct:   15 STAATNRLTITPNSRVLKSPLTEEIMWKRLKDAGFDEQSIKNRDKAALIAYIAKLESEVYDYQHNMGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSALAEAKKREESLKKDVGIAKECISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRAAEALQAEANRYHRIAERKLKEVESREDDLTRRLASFKSECETKENEM 235
The following BLAST results are available for this feature:
BLAST of FC930694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NMCP_ARATH4.323e-7762.44Putative nuclear matrix constituent protein 1-like... [more]
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Properties
Property NameValue
Genbank descriptionC34010C08EF PostHarvC1 Citrus clementina cDNA clone C34010C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930694 ID=FC930694; Name=FC930694; organism=Citrus clementina; type=EST; length=738bp
GGTGAAGAGTAAGCTTTACCAGTCACTGAGCGGCGCCGGATCTTAGAATC
TAGGGCTTTCCTTCTCTGCGATGGCGAGTCCTAGCTCGGGGCGGCTCTCG
ATCACACCGAGTTCGAGGGTTTTGCAGAGCCCTTTGAGTGATGAGTCGAT
CTGGAAGCGGCTTAAAGAGGCTGGACTTGATGAAGAGTCTATTAAACGGA
GAGACAAGGCTGCTCTCATCGCTTATATTGCTAAACTTGAAACCGAGATA
TTTGAGCACCAGCACCACATGGGTCTCCTCATATTAGAAAAGAAGGAGTT
GGCCTCCAAGTATGAGCAAATTAAAGCTTCTGCCGAGGCAGCTGAACTCC
TGCAGAAGCATGACCAAGCTTCTCACTTATCTGCAATAGCTGAAGCAAGG
AAACGAGAAGAGAGTCTGAAGAAGACTTTAGGAGTTGAGAAAGAGTGTAT
AGCCAGTCTTGAGAAGGCCGTGCATGAAATACGTGCAGAATCTGCCGAAA
CGAAGGTTGCAGCTGACAGTAAATTTGCTGAAGCACGCTGTATGGTAGAA
AATGCACAGAAGAAGTTTGCAGAAGCTGAGGCAAAGTTGCATGCTTCGGA
ATCTTTACAAGCTGAAGCTAACAGATATCATCGATCTGCAGAAAGAAAGC
TACAGGATGTTGTAGCTCGTGAAGATGATCTTTCTCGGCGTATAGCATCT
TTCAAGGCCGATTGTGNAAGAAAAGAGAGAGAGATTAT
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