FC930718

Overview
NameFC930718
Unique NameFC930718
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length753
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930718 vs. ExPASy Swiss-Prot
Match: GLYR1_RAT (Putative oxidoreductase GLYR1 OS=Rattus norvegicus GN=Glyr1 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.552e-53
Identity = 101/194 (52.06%), Postives = 135/194 (69.59%), Query Frame = 1
Query:  121 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVYMIMGCMMNTFSEGLVLAEKSG 702
            ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  S    +GK +FFLGEVGN AKM L+V M+ G  M T +EGL LA+ +G
Sbjct:  268 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTG 461          
BLAST of FC930718 vs. ExPASy Swiss-Prot
Match: GLYR1_CHICK (Putative oxidoreductase GLYR1 OS=Gallus gallus GN=GLYR1 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.552e-53
Identity = 101/194 (52.06%), Postives = 135/194 (69.59%), Query Frame = 1
Query:  121 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVYMIMGCMMNTFSEGLVLAEKSG 702
            ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  S    +GK +FFLGEVGN AKM L+V M+ G  M T +EGL LA+ +G
Sbjct:  269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTG 462          
BLAST of FC930718 vs. ExPASy Swiss-Prot
Match: GLYR1_BOVIN (Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLYR1 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.552e-53
Identity = 101/194 (52.06%), Postives = 135/194 (69.59%), Query Frame = 1
Query:  121 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVYMIMGCMMNTFSEGLVLAEKSG 702
            ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  S    +GK +FFLGEVGN AKM L+V M+ G  M T +EGL LA+ +G
Sbjct:  269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTG 462          
BLAST of FC930718 vs. ExPASy Swiss-Prot
Match: GLYR1_HUMAN (Putative oxidoreductase GLYR1 OS=Homo sapiens GN=GLYR1 PE=1 SV=3)

HSP 1 Score: 207.223 bits (526), Expect = 7.765e-53
Identity = 101/194 (52.06%), Postives = 134/194 (69.07%), Query Frame = 1
Query:  121 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVYMIMGCMMNTFSEGLVLAEKSG 702
            ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  S    +GK +FFLGEVGN AKM L+V M+ G  M T +EGL LA  +G
Sbjct:  269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAHVTG 462          
BLAST of FC930718 vs. ExPASy Swiss-Prot
Match: GLYR1_XENTR (Putative oxidoreductase GLYR1 OS=Xenopus tropicalis GN=glyr1 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.573e-52
Identity = 99/194 (51.03%), Postives = 135/194 (69.59%), Query Frame = 1
Query:  121 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVYMIMGCMMNTFSEGLVLAEKSG 702
            ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT   +ADP AA  +V    GVL+ I PGK Y+DMSTVD ET  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ +Y++  S    +GK +FFLGEVGN A+M L++ M+ G  M T +EG+ LA+ +G
Sbjct:  250 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGAHMGRTPAEVVSTCDITFACVADPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDPETVAELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDQGVYEDCSSCFLAMGKTSFFLGEVGNAARMMLILNMVQGSFMATIAEGMTLAQVTG 443          
BLAST of FC930718 vs. ExPASy Swiss-Prot
Match: GLYR1_PONAB (Putative oxidoreductase GLYR1 OS=Pongo abelii GN=GLYR1 PE=2 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 1.464e-51
Identity = 99/194 (51.03%), Postives = 134/194 (69.07%), Query Frame = 1
Query:  121 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVYMIMGCMMNTFSEGLVLAEKSG 702
            ++GFLGLG+MG  I  NLL+ G  VTVW+RT  KCD  +  GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I P K Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  S    +GK +FFLGEVGN AKM L+V M+ G  M T +EGL LA+ +G
Sbjct:  269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWDRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPRKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTG 462          
BLAST of FC930718 vs. ExPASy Swiss-Prot
Match: GLYR1_DANRE (Putative oxidoreductase GLYR1 OS=Danio rerio GN=glyr1 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.240e-50
Identity = 97/194 (50.00%), Postives = 135/194 (69.59%), Query Frame = 1
Query:  124 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL-GEVGNGAKMKLVVYMIMGCMMNTFSEGLVLAEKSG 702
            +GFLGLG+MG  +  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y++MSTVD ET  ++S+ ITS+GG FLEAPVSGS+Q +  G LVI++AG++++Y++  S    +GK +FF+ GE GN A+M L++ M+ G  M T +EGL LA+ +G
Sbjct:  178 IGFLGLGLMGSGVVSNLLKMGHVVTVWNRTAEKCDLFIQEGARLGRTPAEVVSMCDITFSCVSDPKAARDLVLGPSGVLQGIRPGKCYVEMSTVDPETITELSQVITSRGGRFLEAPVSGSQQLSNDGMLVIVAAGDRSVYEDCSSCFQAMGKTSFFIAGEAGNAARMMLILNMVQGSFMATIAEGLTLAQATG 371          
BLAST of FC930718 vs. ExPASy Swiss-Prot
Match: GLYR1_MOUSE (Putative oxidoreductase GLYR1 OS=Mus musculus GN=Glyr1 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.790e-49
Identity = 99/194 (51.03%), Postives = 132/194 (68.04%), Query Frame = 1
Query:  121 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVYMIMGCMMNTFSEGLVLAEKSG 702
            ++GFLGLG+MG  I  NLL+ G  VTVWNRT  K       GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  S    +GK +FFLGEVGN AKM L+V M+ G  M T +EGL LA+ +G
Sbjct:  268 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEK------EGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTG 455          
BLAST of FC930718 vs. ExPASy Swiss-Prot
Match: GLYR1_AEDAE (Putative oxidoreductase GLYR1 homolog OS=Aedes aegypti GN=AAEL006684 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.734e-44
Identity = 89/196 (45.41%), Postives = 127/196 (64.80%), Query Frame = 1
Query:  118 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVYMIMGCMMNTFSEGLVLAEKSGL 705
            ++ GFLGLGIMG  +  NLL +G  V VWNRT +KC +    GA V  +P++VI+   +T   +ADP  A  +VF   GV+     GKGY++M+ VD ETS  I+  I +KGG +LEA + GSK  AE G L+IL+AGE+ L++E  +    I + +F++G+VGN  KM LV+ MI G M+   +EGL LA+++GL
Sbjct:  274 LKFGFLGLGIMGCGMVKNLLNSGHSVVVWNRTATKCRKFQEAGAEVADTPSDVIEMTDVTFSCVADPQVAKELVFGNCGVMSANLVGKGYVEMTGVDPETSHDIAEQIIAKGGRYLEAQIQGSKNQAEEGTLIILAAGERLLFEECQTCFEAISRNSFYMGDVGNATKMNLVLQMISGVMLAGIAEGLALADRAGL 469          
BLAST of FC930718 vs. ExPASy Swiss-Prot
Match: GLYR1_ANOGA (Putative oxidoreductase GLYR1 homolog OS=Anopheles gambiae GN=AGAP009949 PE=3 SV=5)

HSP 1 Score: 174.481 bits (441), Expect = 5.578e-43
Identity = 88/217 (40.55%), Postives = 134/217 (61.75%), Query Frame = 1
Query:   55 VDLKSGKNLEHRGGRY*KNKKMEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVYMIMGCMMNTFSEGLVLAEKSGL 705
            +D+ S  N      R  K  +++ GFLGLG+MG  I  NL+++G  V VWNR+  KC +    GA V  +P++V++   +T   ++DP  A  +VF   GV+     GKGY++M+ VD ETS  I+ AI SKGG +LEA + GSK  AE G L+IL++G++ L++E  S    I + +F+LG+VGN  KM L++ MI G  +   +E + LA+++GL
Sbjct:  262 IDMSSVSNAVQ--SRNIKASQLKFGFLGLGVMGCGIVKNLIKSGHSVVVWNRSAHKCRKFQEVGAEVADTPSDVVEMTDVTYSCVSDPQVAKDMVFGNCGVMSANLAGKGYVEMTGVDPETSNDINEAIISKGGRYLEAQIQGSKNQAEEGTLIILASGDRLLFEECQSCFEAISRNSFYLGDVGNATKMNLILQMISGITLAGVAEAMALADRAGL 476          
The following BLAST results are available for this feature:
BLAST of FC930718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
GLYR1_RAT4.552e-5352.06Putative oxidoreductase GLYR1 OS=Rattus norvegicus... [more]
GLYR1_CHICK4.552e-5352.06Putative oxidoreductase GLYR1 OS=Gallus gallus GN=... [more]
GLYR1_BOVIN4.552e-5352.06Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLY... [more]
GLYR1_HUMAN7.765e-5352.06Putative oxidoreductase GLYR1 OS=Homo sapiens GN=G... [more]
GLYR1_XENTR6.573e-5251.03Putative oxidoreductase GLYR1 OS=Xenopus tropicali... [more]
GLYR1_PONAB1.464e-5151.03Putative oxidoreductase GLYR1 OS=Pongo abelii GN=G... [more]
GLYR1_DANRE1.240e-5050.00Putative oxidoreductase GLYR1 OS=Danio rerio GN=gl... [more]
GLYR1_MOUSE1.790e-4951.03Putative oxidoreductase GLYR1 OS=Mus musculus GN=G... [more]
GLYR1_AEDAE1.734e-4445.41Putative oxidoreductase GLYR1 homolog OS=Aedes aeg... [more]
GLYR1_ANOGA5.578e-4340.55Putative oxidoreductase GLYR1 homolog OS=Anopheles... [more]

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Properties
Property NameValue
Genbank descriptionC34010E09EF PostHarvC1 Citrus clementina cDNA clone C34010E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930718 ID=FC930718; Name=FC930718; organism=Citrus clementina; type=EST; length=753bp
GATTAAAGATTCTTGCTTTATGTAAGTTTGGACTCTGCTGAGAGTTGCAA
GTAAGTAGATCTGAAAAGCGGAAAAAATTTAGAACACAGAGGAGGAAGAT
ATTGAAAAAACAAGAAAATGGAAGTGGGGTTTCTGGGTTTAGGAATTATG
GGCAAGGCCATTTCTATGAACTTGCTTAGAAATGGATTCAAAGTTACTGT
ATGGAACAGGACTCTCTCTAAGTGTGATGAACTCGTGGCACACGGTGCTA
CAGTTGGAGGAAGTCCAGCAGAAGTAATTAAAAAGTGTACGATTACTATT
GGGATGTTAGCTGATCCTGCGGCTGCACTTTCGGTTGTCTTTGACAAAGG
TGGTGTTTTGGAGCAAATTTGTCCTGGGAAAGGTTACATTGACATGTCAA
CAGTTGATCATGAAACTTCAATAAAGATCAGCCGGGCAATTACATCAAAA
GGCGGTCACTTCCTTGAAGCTCCAGTTTCAGGTAGCAAGCAGCCTGCAGA
AACTGGTCAACTAGTAATCCTTTCTGCTGGGGAGAAGGCACTCTATGATG
AAGCAATTTCAGCTCTCAATGTAATTGGAAAGAAGGCCTTCTTTTTGGGG
GAGGTCGGAAACGGAGCAAAAATGAAACTTGTTGTTTACATGATAATGGG
CTGTATGATGAATACATTTTCTGAAGGACTTGTACTGGCTGAAAAGAGTG
GACTTGACCTCGCACTTTACTGATGTACTGGACCTGGGTGGTATTGCTAA
TCC
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