FC930720

Overview
NameFC930720
Unique NameFC930720
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15207 contig Ccv1_Contig15207:1..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930720 vs. ExPASy Swiss-Prot
Match: QORH_ARATH (Putative quinone-oxidoreductase homolog, chloroplastic OS=Arabidopsis thaliana GN=At4g13010 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.034e-61
Identity = 123/174 (70.69%), Postives = 138/174 (79.31%), Query Frame = 2
Query:  173 MAGKPLMHAVQYNSYGGGAADLKHVELSVPTPSKDEVLLKLEATALNPVDWKVQKGQLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGGGLAEFAVAKESSTVTRPPEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHY 694
            MAGK LMHA+QYNSYGGGAA L+HV++ VPTP  +EV LKLEAT+LNPVDWK+QKG +RPFLPRKFPCIPATD            K FKAGDKVVA L++L   GGGLAEFAVA E  TV RP EV AAE + LPVAGLTA QALT  AG+KLDG+G++ NILVTAASGGVGHY
Sbjct:    1 MAGK-LMHALQYNSYGGGAAGLEHVQVPVPTPKSNEVCLKLEATSLNPVDWKIQKGMIRPFLPRKFPCIPATDVAGEVVEVGSGVKNFKAGDKVVAVLSHL--GGGGLAEFAVATEKLTVKRPQEVGAAEAAALPVAGLTALQALTNPAGLKLDGTGKKANILVTAASGGVGHY 171          
BLAST of FC930720 vs. ExPASy Swiss-Prot
Match: QORH_SPIOL (Quinone-oxidoreductase homolog, chloroplastic OS=Spinacia oleracea GN=QOR PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.191e-59
Identity = 115/174 (66.09%), Postives = 132/174 (75.86%), Query Frame = 2
Query:  173 MAGKPLMHAVQYNSYGGGAADLKHVELSVPTPSKDEVLLKLEATALNPVDWKVQKGQLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGGGLAEFAVAKESSTVTRPPEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHY 694
            MA K LMHA+QY+ YGGG   LKHVE++VP P  DE+LLK+EA  LNP+DWK+QKG LRP LPRKFP IP TD              FK GDKVVA L++    GG LAE+AVAKE+ TV RPPEVSAAEG+ LPVA LTAHQALTQ A +KLDGSG++KNIL+TAASGGVGHY
Sbjct:    1 MAAK-LMHAIQYSGYGGGTDALKHVEVAVPDPKSDELLLKIEAATLNPIDWKIQKGVLRPLLPRKFPTIPGTDVAGEVVQAGSAVNRFKTGDKVVAVLSH--ATGGALAEYAVAKENLTVARPPEVSAAEGAALPVAALTAHQALTQFANIKLDGSGERKNILITAASGGVGHY 171          
BLAST of FC930720 vs. ExPASy Swiss-Prot
Match: QOR_BOVIN (Zeta-crystallin OS=Bos taurus GN=CRYZ PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.617e-14
Identity = 54/172 (31.40%), Postives = 86/172 (50.00%), Query Frame = 2
Query:  179 GKPLMHAVQYNSYGGGAADLKHVELSVPTPSKDEVLLKLEATALNPVDWKVQKG--QLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGGGLAEFAVAKESSTVTRPPEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVG 688
            G+ LM A++   +GG        +++VP P   +VL+K++A  +NPVD  ++ G   ++P L    P  P  D              FK GD+V        T  GG AE+A+A + +  T P ++   +G+ + +   TA++AL  SA VK       +++LV  ASGGVG
Sbjct:    4 GQKLMRAIRVFEFGGPEVLKLQSDVAVPIPKDHQVLIKVQACGVNPVDTYIRSGTHNIKPLL----PYTPGFDVAGIIEAVGESVSAFKKGDRVFT----TRTISGGYAEYALAADHTVYTLPEKLDFKQGAAIGIPYFTAYRALLHSACVK-----PGESVLVHGASGGVG 162          
BLAST of FC930720 vs. ExPASy Swiss-Prot
Match: QOR_LAMGU (Quinone oxidoreductase OS=Lama guanicoe GN=CRYZ PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.145e-14
Identity = 52/170 (30.59%), Postives = 83/170 (48.82%), Query Frame = 2
Query:  179 GKPLMHAVQYNSYGGGAADLKHVELSVPTPSKDEVLLKLEATALNPVDWKVQKGQLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGGGLAEFAVAKESSTVTRPPEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVG 688
            G+ LM A++ + +GG        +++VP P + +VL+K++A  +NPVD  ++ G        + P  P  D              FK GD+V        T  GG AE+A+A + +    P E+   +G+ + V   TA++AL  SA  K       +++LV  ASGGVG
Sbjct:    4 GQRLMRAIRVSEFGGPEVLKLQSDVAVPIPEEHQVLIKVQACGVNPVDTYIRSGTYS--RKPRLPYTPGLDVAGLIEAVGERVSAFKKGDRVFT----TSTVSGGYAEYALAADHTVYKLPGELDFQKGAAIGVPYFTAYRALLHSACAKAG-----ESVLVHGASGGVG 162          
BLAST of FC930720 vs. ExPASy Swiss-Prot
Match: QOR_HUMAN (Quinone oxidoreductase OS=Homo sapiens GN=CRYZ PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.335e-13
Identity = 53/172 (30.81%), Postives = 84/172 (48.84%), Query Frame = 2
Query:  179 GKPLMHAVQYNSYGGGAADLKHVELSVPTPSKDEVLLKLEATALNPVDWKVQKG--QLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGGGLAEFAVAKESSTVTRPPEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVG 688
            G+ LM AV+   +GG        +++VP P   +VL+K+ A  +NPV+  ++ G    +P L    P  P +D              FK GD+V        T  GG AE+A+A + +    P ++   +G+ + +   TA++AL  SA VK       +++LV  ASGGVG
Sbjct:    4 GQKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLL----PYTPGSDVAGVIEAVGDNASAFKKGDRVFT----SSTISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAG-----ESVLVHGASGGVG 162          
BLAST of FC930720 vs. ExPASy Swiss-Prot
Match: QOR_RAT (Quinone oxidoreductase OS=Rattus norvegicus GN=Cryz PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 53/172 (30.81%), Postives = 83/172 (48.26%), Query Frame = 2
Query:  179 GKPLMHAVQYNSYGGGAADLKHVELSVPTPSKDEVLLKLEATALNPVDWKVQKG--QLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGGGLAEFAVAKESSTVTRPPEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVG 688
            G+ LM A++   +GG        ++ VP P   +VL+K+ A  +NPV+  ++ G    +P L    P  P +D              FK GD+V  F     T  GG AEFA++ +++T   P  +   +G+ L +   TA +AL  SA  +       +++LV  ASGGVG
Sbjct:    4 GQKLMRAIRVFEFGGPEVLKLQSDVVVPAPQSHQVLIKVHACGVNPVETYIRSGTYSRKPAL----PYTPGSDVAGIIESVGDGVSAFKKGDRVFCF----STVSGGYAEFALSADNTTYPLPETLDFRQGAALGIPYFTACRALFHSARARAG-----ESVLVHGASGGVG 162          
BLAST of FC930720 vs. ExPASy Swiss-Prot
Match: QOR_PONAB (Quinone oxidoreductase OS=Pongo abelii GN=CRYZ PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 52/172 (30.23%), Postives = 83/172 (48.26%), Query Frame = 2
Query:  179 GKPLMHAVQYNSYGGGAADLKHVELSVPTPSKDEVLLKLEATALNPVDWKVQKG--QLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGGGLAEFAVAKESSTVTRPPEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVG 688
            G+ LM AV+   +GG        +++VP P   + L+K+ A  +NPV+  ++ G    +P L    P  P +D              FK GD+V        T  GG AE+A+A + +    P ++   +G+ + +   TA++AL  SA VK       +++LV  ASGGVG
Sbjct:    4 GQKLMRAVRVFEFGGPEVLKLQSDIAVPIPKDHQALIKVHACGVNPVETYIRSGTYSRKPLL----PYTPGSDVAGVIEAVGGNASAFKKGDRVFT----SSTISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSAHVKAG-----ESVLVHGASGGVG 162          
BLAST of FC930720 vs. ExPASy Swiss-Prot
Match: QOR_PIG (Quinone oxidoreductase OS=Sus scrofa GN=CRYZ PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.874e-13
Identity = 51/172 (29.65%), Postives = 83/172 (48.26%), Query Frame = 2
Query:  179 GKPLMHAVQYNSYGGGAADLKHVELSVPTPSKDEVLLKLEATALNPVDWKVQKG--QLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGGGLAEFAVAKESSTVTRPPEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVG 688
            G+ LM A++   +GG        ++++P P  ++VL+K+ A  +NPVD  ++ G   ++P L    P  P  D              FK GD+V      + T  GG AE+A+A + +    P ++   +G+ + +   TA  AL  SA VK       + +L+  ASGGVG
Sbjct:    4 GQKLMSAIRVFKFGGPEVMKLQSDVAIPIPKDNQVLIKVHACGVNPVDTYIRSGTHNMKPLL----PYTPGLDVAGIVEAVGEHVSSFKKGDRVFT----VSTLSGGYAEYALAADDTVYMLPEKLDFKQGAAIGIPYFTACLALLHSACVKAG-----EIVLIHGASGGVG 162          
BLAST of FC930720 vs. ExPASy Swiss-Prot
Match: QORL_ARATH (Quinone oxidoreductase-like protein At1g23740, chloroplastic OS=Arabidopsis thaliana GN=At1g23740 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.874e-13
Identity = 56/173 (32.37%), Postives = 81/173 (46.82%), Query Frame = 2
Query:  191 MHAVQYNSYGGGAADLKHVELSVPTPSKDEVLLKLEATALNPVDWKVQKGQLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNG----GGLAEFAVAKESSTVTRPPEVSAAEGSGLPVAGLTAHQALTQ---SAGVKLDGSGQQKNILVTAASGGVG 688
            M A  Y+ YGG         + VP   +D+VL+K+ A ALNPVD K ++G+ +       P +P  D            K  K GD+V A ++     G    G LAE+   +E     +P  +  A+ +GLP+A  TA + L +   SAG         K+ILV   +GGVG
Sbjct:   78 MKAWVYSDYGGVDVLKLESNIVVPEIKEDQVLIKVVAAALNPVDAKRRQGKFKA-TDSPLPTVPGYDVAGVVVKVGSAVKDLKEGDEVYANVSEKALEGPKQFGSLAEYTAVEEKLLALKPKNIDFAQAAGLPLAIETADEGLVRTEFSAG---------KSILVLNGAGGVG 240          
BLAST of FC930720 vs. ExPASy Swiss-Prot
Match: QOR_CAVPO (Quinone oxidoreductase OS=Cavia porcellus GN=CRYZ PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 52/172 (30.23%), Postives = 81/172 (47.09%), Query Frame = 2
Query:  179 GKPLMHAVQYNSYGGGAADLKHVELSVPTPSKDEVLLKLEATALNPVDWKVQKGQLR--PFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGGGLAEFAVAKESSTVTRPPEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVG 688
            G+ LM A++   +GG        +++VP P   +VL+K+ A  +NPV+  ++ G     P L    P  P TD              FK GD+V        T  GG AE+A+A + +    P ++   +G+ + +   TA +AL  SA  K       +++LV  ASGGVG
Sbjct:    4 GQKLMRAIRVFEFGGPEVLKVQSDVAVPIPKDHQVLIKVHACGINPVETYIRSGTYTRIPLL----PYTPGTDVAGVVESIGNDVSAFKKGDRVFT----TSTISGGYAEYALASDHTVYRLPEKLDFRQGAAIGIPYFTACRALFHSARAKAG-----ESVLVHGASGGVG 162          
The following BLAST results are available for this feature:
BLAST of FC930720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
QORH_ARATH1.034e-6170.69Putative quinone-oxidoreductase homolog, chloropla... [more]
QORH_SPIOL8.191e-5966.09Quinone-oxidoreductase homolog, chloroplastic OS=S... [more]
QOR_BOVIN1.617e-1431.40Zeta-crystallin OS=Bos taurus GN=CRYZ PE=2 SV=2[more]
QOR_LAMGU6.145e-1430.59Quinone oxidoreductase OS=Lama guanicoe GN=CRYZ PE... [more]
QOR_HUMAN2.335e-1330.81Quinone oxidoreductase OS=Homo sapiens GN=CRYZ PE=... [more]
QOR_RAT3.983e-1330.81Quinone oxidoreductase OS=Rattus norvegicus GN=Cry... [more]
QOR_PONAB5.202e-1330.23Quinone oxidoreductase OS=Pongo abelii GN=CRYZ PE=... [more]
QOR_PIG8.874e-1329.65Quinone oxidoreductase OS=Sus scrofa GN=CRYZ PE=2 ... [more]
QORL_ARATH8.874e-1332.37Quinone oxidoreductase-like protein At1g23740, chl... [more]
QOR_CAVPO1.514e-1230.23Quinone oxidoreductase OS=Cavia porcellus GN=CRYZ ... [more]

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Properties
Property NameValue
Genbank descriptionC34010E11EF PostHarvC1 Citrus clementina cDNA clone C34010E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930720 ID=FC930720; Name=FC930720; organism=Citrus clementina; type=EST; length=696bp
GGTGACATTCCGGGCATTTACCACCCACTACTAGTAAGCGGCCACCCAAA
GGGAAGCGAGTACACTGTCACTGCGTTACATACATATTATAATCGTATGC
AGAGTGGTCTCTTTGATTCTATCGATAGCACACTCGAAATCCCAGAAACG
GCATCGTGTATTAGCTGTGAAAATGGCAGGAAAGCCTCTTATGCACGCGG
TTCAGTATAATTCTTATGGTGGAGGAGCTGCTGATTTGAAGCATGTTGAA
CTGTCGGTTCCTACCCCAAGCAAAGATGAGGTTTTGCTTAAACTTGAAGC
AACCGCTCTAAATCCGGTTGACTGGAAAGTCCAGAAGGGCCAGTTACGCC
CTTTTTTGCCTCGCAAGTTTCCTTGCATACCTGCAACTGATGTAGCAGGA
GAGGTCGTAGGGGTAGGATCAGAAGTTAAAATTTTCAAAGCTGGTGACAA
AGTTGTAGCTTTTCTTAACTACCTCGTAACTAATGGAGGTGGACTAGCTG
AGTTTGCTGTGGCTAAGGAGAGCTCGACAGTTACCAGGCCACCAGAGGTT
TCAGCAGCTGAAGGTTCTGGCTTACCTGTTGCTGGTCTCACTGCTCACCA
GGCCCTTACTCAATCTGCAGGTGTCAAGCTTGATGGAAGTGGGCAACAGA
AAAACATTCTAGTAACTGCTGCCTCAGGGGGTGTAGGTCACTATGC
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