FC930736

Overview
NameFC930736
Unique NameFC930736
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930736 vs. ExPASy Swiss-Prot
Match: BRWD1_HUMAN (Bromodomain and WD repeat-containing protein 1 OS=Homo sapiens GN=BRWD1 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 3.449e-13
Identity = 54/165 (32.73%), Postives = 81/165 (49.09%), Query Frame = 1
Query:   88 QGHQEYIN-------YSGSREVGPWITVKGNIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDP-TSSVSNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWEL 558
            QGH+ YI        Y  +    PW   K ++R  E  K+  + Y    G    CC + L FIDP T  + + +F +   ++    DFLV R  +D A QRNW   D+ +      S  D +WW G VLS +P   ++PDS ++ Y V++  + TE    SPW++
Sbjct:  970 QGHEAYIEAVRRNNIYELNPNKEPWR--KMDLRDQELVKIVGIRYEV--GPPTLCC-LKLAFIDPATGKLMDKSFSIRYHDMPDVIDFLVLRQFYDEARQRNWQSCDRFR------SIIDDAWWFGTVLSQEPYQPQYPDSHFQCYIVRW--DNTEIEKLSPWDM 1121          
BLAST of FC930736 vs. ExPASy Swiss-Prot
Match: BRWD3_HUMAN (Bromodomain and WD repeat-containing protein 3 OS=Homo sapiens GN=BRWD3 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.813e-12
Identity = 50/165 (30.30%), Postives = 82/165 (49.70%), Query Frame = 1
Query:   88 QGHQEYIN-------YSGSREVGPWITVKGNIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDPTSS-VSNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWEL 558
            QGH+ Y+        YS + +  PW   K ++R  EF K+  ++Y    G    CC + L F+DP S  ++  +F +   ++    DFLV    ++ A +RNW   D+ +      S  D +WW G V S +P   E+PDS ++ Y+V +  +  E    SPW++
Sbjct:  951 QGHEAYVRAVRKSKIYSVNLQKQPWN--KMDLREQEFVKIVGIKYEV--GPPTLCC-LKLAFLDPISGKMTGESFSIKYHDMPDVIDFLVLHQFYNEAKERNWQIGDRFR------SIIDDAWWFGTVESQQPFQPEYPDSSFQCYSVHW--DNNEREKMSPWDM 1102          
BLAST of FC930736 vs. ExPASy Swiss-Prot
Match: BRWD3_MOUSE (Bromodomain and WD repeat-containing protein 3 OS=Mus musculus GN=Brwd3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.980e-12
Identity = 50/165 (30.30%), Postives = 82/165 (49.70%), Query Frame = 1
Query:   88 QGHQEYIN-------YSGSREVGPWITVKGNIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDPTSS-VSNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWEL 558
            QGH+ Y+        YS + +  PW   K ++R  EF K+  ++Y    G    CC + L F+DP S  ++  +F +   ++    DFLV    ++ A +RNW   D+ +      S  D +WW G V S +P   E+PDS ++ Y+V +  +  E    SPW++
Sbjct:  949 QGHEAYVRAVRKSKIYSVNLQKQPWN--KMDLREQEFVKIVGIKYEI--GPPTLCC-LKLAFLDPISGKMTGESFSIKYHDMPDVIDFLVLHQFYNEAKERNWQIGDRFR------SIIDDAWWFGTVESQQPFQPEYPDSSFQCYSVHW--DNNEREKMSPWDM 1100          
BLAST of FC930736 vs. ExPASy Swiss-Prot
Match: BRWD1_MOUSE (Bromodomain and WD repeat-containing protein 1 OS=Mus musculus GN=Brwd1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.504e-12
Identity = 54/165 (32.73%), Postives = 80/165 (48.48%), Query Frame = 1
Query:   88 QGHQEYIN-------YSGSREVGPWITVKGNIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDP-TSSVSNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWEL 558
            QGH+ YI        Y  +    PW   K ++R  E  K+  L Y    G     C + L FIDP T  +++ +F +   ++    D LV R  +D A QRNW   D+ +      S  D +WW G VLS  P   ++PDS ++ Y V++  + TET   SPW++
Sbjct:  971 QGHEAYIEAVRRNNIYELNPHKEPW--GKMDLRDQELVKIVGLRYEV--GPPTLLC-LKLAFIDPATGRLTDKSFSIRYHDMPDVIDLLVLRPFYDEARQRNWQPCDRFR------SIIDDAWWFGTVLSQDPYQPQYPDSHFQCYIVRW--DNTETEKLSPWDM 1122          
BLAST of FC930736 vs. ExPASy Swiss-Prot
Match: PHIP_HUMAN (PH-interacting protein OS=Homo sapiens GN=PHIP PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.449e-11
Identity = 51/165 (30.91%), Postives = 79/165 (47.88%), Query Frame = 1
Query:   88 QGHQEYIN-------YSGSREVGPWITVKGNIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDP-TSSVSNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWEL 558
            QGH+ Y+        YS + +  PW   K  +R  E  K+  ++Y    G    CC + L F+DP T  ++  +F +   ++    DFLV R +FD A  R W   D+ +      S  D +WW G + S +P   E+PDS ++ Y V +    TE    SPW++
Sbjct:  969 QGHEAYVEMARKNKIYSINPKKQPWH--KMELREQELMKIVGIKYEV--GLPTLCC-LKLAFLDPDTGKLTGGSFTMKYHDMPDVIDFLVLRQQFDDAKYRRWNIGDRFR------SVIDDAWWFGTIESQEPLQLEYPDSLFQCYNVCWDNGDTEK--MSPWDM 1120          
BLAST of FC930736 vs. ExPASy Swiss-Prot
Match: PHIP_MOUSE (PH-interacting protein OS=Mus musculus GN=Phip PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.892e-11
Identity = 51/165 (30.91%), Postives = 79/165 (47.88%), Query Frame = 1
Query:   88 QGHQEYIN-------YSGSREVGPWITVKGNIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDP-TSSVSNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWEL 558
            QGH+ Y+        YS + +  PW   K  +R  E  K+  ++Y    G    CC + L F+DP T  ++  +F +   ++    DFLV R +FD A  R W   D+ +      S  D +WW G + S +P   E+PDS ++ Y V +    TE    SPW++
Sbjct:  969 QGHEAYVEMARKNKIYSINPKKQPWH--KMELREQELMKIVGIKYEV--GLPTLCC-LKLAFLDPDTGKLTGGSFTMKYHDMPDVIDFLVLRQQFDDAKYRPWNIGDRFR------SVIDDAWWFGTIESQEPLQPEYPDSLFQCYNVCWDNGDTEK--MSPWDM 1120          
The following BLAST results are available for this feature:
BLAST of FC930736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
BRWD1_HUMAN3.449e-1332.73Bromodomain and WD repeat-containing protein 1 OS=... [more]
BRWD3_HUMAN3.813e-1230.30Bromodomain and WD repeat-containing protein 3 OS=... [more]
BRWD3_MOUSE4.980e-1230.30Bromodomain and WD repeat-containing protein 3 OS=... [more]
BRWD1_MOUSE6.504e-1232.73Bromodomain and WD repeat-containing protein 1 OS=... [more]
PHIP_HUMAN1.449e-1130.91PH-interacting protein OS=Homo sapiens GN=PHIP PE=... [more]
PHIP_MOUSE1.892e-1130.91PH-interacting protein OS=Mus musculus GN=Phip PE=... [more]
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Properties
Property NameValue
Genbank descriptionC34010G03EF PostHarvC1 Citrus clementina cDNA clone C34010G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930736 ID=FC930736; Name=FC930736; organism=Citrus clementina; type=EST; length=744bp
ACAGGTGAGATGGATATCCATAATAAACTCACTGTTTTTTTCCCTTGTTT
CTGTACTTATATAGTTTGTGCTTCATAATCTAATTTTCAGGGGCATCAAG
AGTATATAAATTATAGCGGCTCAAGAGAAGTGGGCCCTTGGATAACAGTA
AAGGGAAACATAAGAGCAGTTGAATTTTGTAAAGTCGAAAGCCTTGAATA
TGCCACTGCTTCAGGGTCTGGAGATAGCTGTTGCAAAATGACACTCAAAT
TTATAGACCCTACTTCCAGTGTGTCCAATATGACATTCAGACTTACTTTG
CCTGAAGTGACTGGTTTCCCAGACTTCCTTGTTGAAAGAACTCGGTTTGA
TGCTGCTATTCAGAGAAATTGGACATGCAGGGATAAGTGCAAAGTCTGGT
GGAAAAATGAGAGTGATGAAGATGGTAGTTGGTGGGACGGCCGAGTTCTG
TCTGTCAAGCCCAAATCTTCTGAATTTCCAGACAGTCCTTGGGAAAGGTA
TACCGTCCAGTACAAGACTGAGCCCACAGAAACACATCTACACAGTCCTT
GGGAGCTTTTCGATTCTGATACTCAGTGGGAGCAACCTCGTATTGACGAT
GATAACAGAAATAAGCTGTTGTCTGCCTTTGCCAAATTAGAGCAGTCTGC
CAATAGAGTCCAGGATCAATATGGAGTTCAAAAATTGAAAGCAGTCTCAC
AGAAGAACCACTTTACGAACAGGTTTCCTGTTCCATTATCTCTT
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