FC930737

Overview
NameFC930737
Unique NameFC930737
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930737 vs. ExPASy Swiss-Prot
Match: UBA5_DICDI (Ubiquitin-like modifier-activating enzyme 5 OS=Dictyostelium discoideum GN=uba5 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.464e-37
Identity = 53/79 (67.09%), Postives = 62/79 (78.48%), Query Frame = 1
Query:  433 AAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITTVQGFETFMSSLKK 669
            AAEMLTRCGIG+LLL+DYD VE+ANMNRLFFRPEQ G +KT AA +TL+ INPDV  ES   NITT+  FE F   ++K
Sbjct:   57 AAEMLTRCGIGKLLLFDYDTVEIANMNRLFFRPEQSGKSKTMAAQETLSSINPDVQFESHNYNITTIDNFEHFKGRIEK 135          

HSP 2 Score: 68.1662 bits (165), Expect = 1.464e-37
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 3
Query:  264 ATARRSKVKDMSSEVVDSNPYSRLMALQRMGIVENYERIREFSVAIVVWG 413
            AT  R K++ MSSEV+DSNPYSRLMAL++MGIV NYE IR  SV IV  G
Sbjct:    2 ATPYREKIEKMSSEVIDSNPYSRLMALKKMGIVNNYENIRNLSVIIVGLG 51          
BLAST of FC930737 vs. ExPASy Swiss-Prot
Match: UBA5_RAT (Ubiquitin-like modifier-activating enzyme 5 OS=Rattus norvegicus GN=Uba5 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.213e-36
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 1
Query:  436 AEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITTVQGFETFMSSL 663
            AEMLTRCGIG+LLL+DYDKVELANMNRLFF+P Q GM+K  AA  TL  INPDV+ E    NITTV+ FE FM+ +
Sbjct:   87 AEMLTRCGIGKLLLFDYDKVELANMNRLFFQPYQAGMSKVQAAEHTLRSINPDVLFEVHNYNITTVEHFEHFMNRI 162          

HSP 2 Score: 67.3958 bits (163), Expect = 1.213e-36
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 3
Query:  225 ELRVENLTKMAMSATARRSKVKDMSSEVVDSNPYSRLMALQRMGIVENYERIREFSVAIV 404
            EL  E   ++A      R++++ MS EVVDSNPYSRLMAL+RMG+V +YE+IR ++VAIV
Sbjct:   18 ELARERSRRIAGDGHCGRTRIQKMSDEVVDSNPYSRLMALKRMGVVSDYEKIRTYAVAIV 77          
BLAST of FC930737 vs. ExPASy Swiss-Prot
Match: UBA5_PONAB (Ubiquitin-like modifier-activating enzyme 5 OS=Pongo abelii GN=UBA5 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.059e-36
Identity = 50/76 (65.79%), Postives = 60/76 (78.95%), Query Frame = 1
Query:  436 AEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITTVQGFETFMSSL 663
            AEMLTRCGIG+LLL+DYDKVELANMNRLFF+P Q G++K  AA  TL +INPDV+ E    NITTV+ F+ FM  +
Sbjct:   89 AEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRI 164          

HSP 2 Score: 67.3958 bits (163), Expect = 2.059e-36
Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = 3
Query:  210 SINKLELRVENLTK-MAMSATAR----------RSKVKDMSSEVVDSNPYSRLMALQRMGIVENYERIREFSVAIV 404
            S+ +L+ RV+ L + +A   + +          R +++ MSSEVVDSNPYSRLMAL+RMGIV +YE+IR F+VAIV
Sbjct:    4 SVERLQQRVQELERELAQERSLQVPRSGDGGGGRVRIEKMSSEVVDSNPYSRLMALKRMGIVSDYEKIRTFAVAIV 79          
BLAST of FC930737 vs. ExPASy Swiss-Prot
Match: UBA5_HUMAN (Ubiquitin-like modifier-activating enzyme 5 OS=Homo sapiens GN=UBA5 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.059e-36
Identity = 50/76 (65.79%), Postives = 60/76 (78.95%), Query Frame = 1
Query:  436 AEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITTVQGFETFMSSL 663
            AEMLTRCGIG+LLL+DYDKVELANMNRLFF+P Q G++K  AA  TL +INPDV+ E    NITTV+ F+ FM  +
Sbjct:   89 AEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRI 164          

HSP 2 Score: 67.3958 bits (163), Expect = 2.059e-36
Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = 3
Query:  210 SINKLELRVENLTK-MAMSATAR----------RSKVKDMSSEVVDSNPYSRLMALQRMGIVENYERIREFSVAIV 404
            S+ +L+ RV+ L + +A   + +          R +++ MSSEVVDSNPYSRLMAL+RMGIV +YE+IR F+VAIV
Sbjct:    4 SVERLQQRVQELERELAQERSLQVPRSGDGGGGRVRIEKMSSEVVDSNPYSRLMALKRMGIVSDYEKIRTFAVAIV 79          
BLAST of FC930737 vs. ExPASy Swiss-Prot
Match: UBA5_MOUSE (Ubiquitin-like modifier-activating enzyme 5 OS=Mus musculus GN=Uba5 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.059e-36
Identity = 51/76 (67.11%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  436 AEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITTVQGFETFMSSL 663
            AEMLTRCGIG+LLL+DYDKVELANMNRLFF+P Q G++K  AA  TL +INPDV+ E    NITTV+ FE FM+ +
Sbjct:   87 AEMLTRCGIGKLLLFDYDKVELANMNRLFFQPYQAGLSKVHAAEHTLRNINPDVLFEVHNYNITTVEHFEHFMNRI 162          

HSP 2 Score: 67.781 bits (164), Expect = 2.059e-36
Identity = 37/74 (50.00%), Postives = 53/74 (71.62%), Query Frame = 3
Query:  210 SINKLELRVENLTK-MAMSATAR--------RSKVKDMSSEVVDSNPYSRLMALQRMGIVENYERIREFSVAIV 404
            S+ +L  RVE L + +A   T R        R+++++MS EV+DSNPYSRLMAL+RMGIV +Y++IR ++VAIV
Sbjct:    4 SVERLRQRVEELEQELARERTRRSGGDGHCGRTRIQEMSDEVLDSNPYSRLMALKRMGIVSDYKKIRTYAVAIV 77          
The following BLAST results are available for this feature:
BLAST of FC930737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
UBA5_DICDI1.464e-3767.09Ubiquitin-like modifier-activating enzyme 5 OS=Dic... [more]
UBA5_RAT1.213e-3668.42Ubiquitin-like modifier-activating enzyme 5 OS=Rat... [more]
UBA5_PONAB2.059e-3665.79Ubiquitin-like modifier-activating enzyme 5 OS=Pon... [more]
UBA5_HUMAN2.059e-3665.79Ubiquitin-like modifier-activating enzyme 5 OS=Hom... [more]
UBA5_MOUSE2.059e-3667.11Ubiquitin-like modifier-activating enzyme 5 OS=Mus... [more]
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Properties
Property NameValue
Genbank descriptionC34010G04EF PostHarvC1 Citrus clementina cDNA clone C34010G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930737 ID=FC930737; Name=FC930737; organism=Citrus clementina; type=EST; length=683bp
GAGAATTCCTTCGGTGGGCGGTAGCTTTAATCAACTTCCGAAGCCGAAAG
CATTTCCGTTGCTTCCAAAACAAAAGTGATTCCTTCTGCGGCGGAGAGAC
AGAGAGAGAAACGTATACAGTGAAAAGAAAAATGGAGGCTGAATTGAAAG
ATATGATCGACGATCTCGAATCTCTGAAGCGATCGTTACCTGACTCTTCT
CTTCACGCTTCAATCAATAAGCTGGAATTGCGTGTCGAAAATCTCACAAA
GATGGCAATGTCTGCAACTGCTCGGCGTTCAAAAGTCAAGGATATGAGTT
CTGAAGTGGTGGATAGCAACCCCTACAGCAGGCTTATGGCACTTCAAAGA
ATGGGTATTGTGGAGAACTATGAGCGAATACGGGAGTTCTCAGTTGCCAT
AGTTGTCTGGGGTTGGTGGTGTTGGGAGTGTTGCAGCTGAAATGCTCACA
AGGTGTGGCATAGGTCGTCTTTTGTTGTATGATTATGACAAAGTGGAGTT
AGCCAATATGAATAGGCTATTTTTTCGTCCAGAGCAGGTTGGTATGACAA
AAACCGATGCAGCTGTTCAGACCCTTGCAGACATTAATCCTGATGTTGTT
CTTGAGAGCTTCACCCTAAACATTACGACTGTGCAAGGGTTTGAAACCTT
TATGTCAAGTTTAAAGAAACAATCATTTCGCCC
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