FC930738

Overview
NameFC930738
Unique NameFC930738
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930738 vs. ExPASy Swiss-Prot
Match: SPT51_ARATH (Putative transcription elongation factor SPT5 homolog 1 OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 4.974e-92
Identity = 165/224 (73.66%), Postives = 179/224 (79.91%), Query Frame = 1
Query:   49 DALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVT----------------VDRSMISDNVVVSTPYR--------DTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLP 648
            D+L+GTTVK+RLGP+KGYRG VV+VKG SVRVELE  MK+VT                 + +  S   ++   Y+        DT RY MGSETPMHPSRTPLHPYMTPMRD+GATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGG+YSDAGTPRD  S Y NAPSPYLPSTP GQPMTP+SASYLP
Sbjct:  700 DSLLGTTVKIRLGPFKGYRGPVVEVKGNSVRVELE--MKIVTGKPLNSLLRVWVSTCRTNSNNSSYMQLIGVQYQIMLRQHRLDTSRYSMGSETPMHPSRTPLHPYMTPMRDSGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGSYSDAGTPRDHGSAYANAPSPYLPSTP-GQPMTPSSASYLP 920          
BLAST of FC930738 vs. ExPASy Swiss-Prot
Match: SPT52_ARATH (Putative transcription elongation factor SPT5 homolog 2 OS=Arabidopsis thaliana GN=At2g34210 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 5.731e-64
Identity = 134/217 (61.75%), Postives = 151/217 (69.59%), Query Frame = 1
Query:   49 DALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVT----VDRSMISD---NVVVSTPYRDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGW-ASTPG-GNYSDAGTPRDSSSTY------VNAPSP-------YLPSTPGGQPMTPNS 633
            D LVGT VK+RLGP+KGY GR+V+VK + VRVELE+  K+VT     +R  ISD   NVV       TP+Y MGS+TPMHPSRTPLHP MTPMR +GATPIHDGMRTPMR RAWNPY PMSPPRDNWEDGNPGSWGTSP           YEA TPGS W +STPG  +Y DAGTP ++   Y       NAPSP       YLP+TPGGQ MTP +
Sbjct:  683 DHLVGTYVKIRLGPFKGYSGRLVEVKDKLVRVELEA--KIVTGKLHFERKAISDMTDNVVA------TPQYNMGSQTPMHPSRTPLHPCMTPMRHSGATPIHDGMRTPMRGRAWNPYMPMSPPRDNWEDGNPGSWGTSP-----------YEAATPGSDWGSSTPGRSSYRDAGTPINNGFVYYLLCLNANAPSPMTPSSTSYLPTTPGGQAMTPGT 880          
BLAST of FC930738 vs. ExPASy Swiss-Prot
Match: SPT5H_CHICK (Transcription elongation factor SPT5 OS=Gallus gallus GN=SUPT5H PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.292e-23
Identity = 75/211 (35.55%), Postives = 102/211 (48.34%), Query Frame = 1
Query:   55 LVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISD----------NVVVSTPY--RDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPR--DNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPY-LPSTPGGQPMTPNSASY 642
            L+G TV++  GPYKGY G V D    + RVEL S  + ++VDR  ++           +    TP     TP YG GS TPM+ S+TPLH           TP+HDG RTP +  AW+P  P +P R  +++E G       SPQ   G+P  +    P P S   + P  N    GTP   ++      SPY +PS  G    +P+  SY
Sbjct:  697 LIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGSGSRTPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRADEDFEYGFDDEPTPSPQGYGGTPNPQTPGYPDPSSPQVTQP-YNPQTPGTPAMYNTDQF---SPYAVPSPQGSYQPSPSPQSY 903          
BLAST of FC930738 vs. ExPASy Swiss-Prot
Match: SPT5H_DANRE (Transcription elongation factor SPT5 OS=Danio rerio GN=supt5h PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.372e-23
Identity = 83/255 (32.55%), Postives = 110/255 (43.14%), Query Frame = 1
Query:   55 LVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMIS----------DNVVVSTPY--RDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSP--PRDNWE---DGNP-----GSWGT----------------SPQYQPGSPPSRA---------YEAPTPGSGWASTPGGNYSDAGTP-------RDSSSTYVNAPSPYL------PSTPGGQPMTPNSAS 639
            L+G TV++  GPYKGY G V D    + RVEL S  + ++VDR  ++           +  + TP     TP YG GS TPM+ S+TPLH           TP+HDG RTP +  AW+P  P +P  P D +E   D  P     G  GT                +PQY P +P + A         Y AP+P   +  +P         P         S ++Y   PSP        PS  G  PMTP + S
Sbjct:  703 LIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVGGKERQGRSSTHLRTPMYGSQTPIYGTGSRTPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPNNPNTPSRPDDEYEFAYDDEPSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTDQYSPYAAPSPQGSYQPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPS 957          
BLAST of FC930738 vs. ExPASy Swiss-Prot
Match: SPT5H_PONAB (Transcription elongation factor SPT5 OS=Pongo abelii GN=SUPT5H PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.428e-22
Identity = 81/230 (35.22%), Postives = 104/230 (45.22%), Query Frame = 1
Query:   55 LVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISD----------NVVVSTPY--RDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPR--DNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTP----RDSSSTYVNAPSP---YLPS-----------TPGGQPMTPNSASYLP 648
            L+G TV++  GPYKGY G V D    + RVEL S  + ++VDR  ++           +    TP     TP YG GS TPM+ S+TPL            TP+HDG RTP +  AW+P  P +P R  + +E         SPQ   G+P  +    P P S   + P  N    GTP     D  S Y  APSP   Y PS           +P G   T + ASY P
Sbjct:  701 LIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGSGSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEPTPSPQAYGGTPNPQTPGYPDPSSPQVN-PQYNPQTPGTPAMYNTDQFSPYA-APSPQGSYQPSPSPQSYHQVAPSPAGYQNTHSPASYHP 928          
BLAST of FC930738 vs. ExPASy Swiss-Prot
Match: SPT5H_MOUSE (Transcription elongation factor SPT5 OS=Mus musculus GN=Supt5h PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.428e-22
Identity = 81/230 (35.22%), Postives = 104/230 (45.22%), Query Frame = 1
Query:   55 LVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISD----------NVVVSTPY--RDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPR--DNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTP----RDSSSTYVNAPSP---YLPS-----------TPGGQPMTPNSASYLP 648
            L+G TV++  GPYKGY G V D    + RVEL S  + ++VDR  ++           +    TP     TP YG GS TPM+ S+TPL            TP+HDG RTP +  AW+P  P +P R  + +E         SPQ   G+P  +    P P S   + P  N    GTP     D  S Y  APSP   Y PS           +P G   T + ASY P
Sbjct:  699 LIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVDSQRPGGMTSTYGRTPMYGSQTPMYGSGSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEPTPSPQAYGGTPNPQTPGYPDPSSPQVN-PQYNPQTPGTPAMYNTDQFSPYA-APSPQGSYQPSPSPQSYHQVAPSPAGYQNTHSPASYHP 926          
BLAST of FC930738 vs. ExPASy Swiss-Prot
Match: SPT5H_HUMAN (Transcription elongation factor SPT5 OS=Homo sapiens GN=SUPT5H PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.428e-22
Identity = 81/230 (35.22%), Postives = 104/230 (45.22%), Query Frame = 1
Query:   55 LVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISD----------NVVVSTPY--RDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPR--DNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTP----RDSSSTYVNAPSP---YLPS-----------TPGGQPMTPNSASYLP 648
            L+G TV++  GPYKGY G V D    + RVEL S  + ++VDR  ++           +    TP     TP YG GS TPM+ S+TPL            TP+HDG RTP +  AW+P  P +P R  + +E         SPQ   G+P  +    P P S   + P  N    GTP     D  S Y  APSP   Y PS           +P G   T + ASY P
Sbjct:  705 LIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGSGSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEPTPSPQAYGGTPNPQTPGYPDPSSPQVN-PQYNPQTPGTPAMYNTDQFSPYA-APSPQGSYQPSPSPQSYHQVAPSPAGYQNTHSPASYHP 932          
BLAST of FC930738 vs. ExPASy Swiss-Prot
Match: SPT5H_DROME (Transcription elongation factor SPT5 OS=Drosophila melanogaster GN=Spt5 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.930e-19
Identity = 75/217 (34.56%), Postives = 102/217 (47.00%), Query Frame = 1
Query:   55 LVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMI----------SDNVVVSTPYRDTPRYG--------MGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSP---PSRAYEAPTPGSGWASTPG---GNYSDAGTPRDSSSTYVNAPSP--YLPSTPGGQPMTP 627
            ++G T+K+  GPYKG  G V D    + RVEL +  + ++VDR+ I          S +    TP R TP YG         GS+TP+  S+TP     T       TP HDG  TP R  AW+P    +P R+N  D +      SP Y P +P    +  +   TPG+ + S       N S +  P      Y+N PSP  Y P+TPGG P +P
Sbjct:  741 ILGKTIKISGGPYKGAVGIVKDATESTARVELHTSCQTISVDRNHIAIVGVTGKEGSVSTYGRTPAR-TPGYGAQTPSYTAAGSKTPLVGSQTPNWDTDTRTPYGTMTPSHDGSMTP-RHGAWDPTANTTPARNNDFDYSLEEPSPSPGYNPSTPGYQMTSQFAPQTPGTLYGSDRSYSPFNPSPSPAPSPYPVGYMNTPSPSTYSPNTPGGIPQSP 955          
BLAST of FC930738 vs. ExPASy Swiss-Prot
Match: SPT5H_CAEEL (Transcription elongation factor SPT5 OS=Caenorhabditis elegans GN=spt-5 PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 2.441e-14
Identity = 69/212 (32.55%), Postives = 96/212 (45.28%), Query Frame = 1
Query:   55 LVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRS---MISDNVVVS-------------TPYRD---TPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIH-DGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPN 630
            L+G  V++  GP KG+ G V D    +VRVEL +Q + ++VDR+   ++ D  + +             TP RD   TP Y  GS+TPM+ ++TP++  MTP  D G TP + +G RTP    A+   TP     D        ++G      P      A  A TP  G  ST GG     G+  D+S T     S   P        TPN
Sbjct:  731 LIGKNVRIIKGPMKGHFGIVRDATEDTVRVELHTQCRTISVDRARVMVVGDTGITAGSGGGSSFYSSSKTPMRDSGKTPMY--GSKTPMYGAQTPMYGSMTPAYDGGRTPAYGEGGRTP----AYGSKTPAYGDLDEHSSSRTPAYGNDSSRTPAY--GSADGARTPAYG--STEGGRTPAYGS-MDNSRTPAYDDSGRTPGYESMPSRTPN 931          
The following BLAST results are available for this feature:
BLAST of FC930738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SPT51_ARATH4.974e-9273.66Putative transcription elongation factor SPT5 homo... [more]
SPT52_ARATH5.731e-6461.75Putative transcription elongation factor SPT5 homo... [more]
SPT5H_CHICK1.292e-2335.55Transcription elongation factor SPT5 OS=Gallus gal... [more]
SPT5H_DANRE8.372e-2332.55Transcription elongation factor SPT5 OS=Danio reri... [more]
SPT5H_PONAB1.428e-2235.22Transcription elongation factor SPT5 OS=Pongo abel... [more]
SPT5H_MOUSE1.428e-2235.22Transcription elongation factor SPT5 OS=Mus muscul... [more]
SPT5H_HUMAN1.428e-2235.22Transcription elongation factor SPT5 OS=Homo sapie... [more]
SPT5H_DROME1.930e-1934.56Transcription elongation factor SPT5 OS=Drosophila... [more]
SPT5H_CAEEL2.441e-1432.55Transcription elongation factor SPT5 OS=Caenorhabd... [more]
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Properties
Property NameValue
Genbank descriptionC34010G05EF PostHarvC1 Citrus clementina cDNA clone C34010G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930738 ID=FC930738; Name=FC930738; organism=Citrus clementina; type=EST; length=648bp
GGTGGTCCTCCAGCCGGAGGAAGGAATAGAGGTGGAAGAGGAGGACATGA
TGCTTTGGTTGGGACTACGGTGAAAGTTCGCCTAGGTCCTTACAAGGGCT
ACCGCGGGCGGGTGGTAGATGTTAAGGGGCAATCAGTTCGTGTTGAGCTG
GAGTCACAAATGAAGGTTGTTACAGTTGATCGAAGTATGATCTCTGACAA
TGTGGTTGTTTCAACACCGTACCGTGATACACCTCGTTATGGTATGGGAA
GTGAAACTCCTATGCATCCTTCTCGAACTCCACTGCATCCTTATATGACT
CCAATGAGAGATGCTGGGGCAACACCCATTCATGATGGCATGAGAACACC
TATGCGTGATCGAGCATGGAATCCTTATACACCAATGAGTCCACCAAGGG
ATAATTGGGAAGATGGAAACCCTGGCTCCTGGGGAACCAGTCCACAATAT
CAGCCAGGAAGTCCTCCTTCACGTGCATATGAAGCACCTACTCCTGGTTC
AGGTTGGGCTAGTACACCGGGTGGCAATTATAGTGATGCTGGAACACCGA
GAGATAGCAGTTCGACTTATGTCAATGCTCCAAGCCCTTATCTGCCATCA
ACTCCAGGTGGGCAGCCAATGACGCCAAACTCAGCATCCTATCTTCCT
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