FC930739

Overview
NameFC930739
Unique NameFC930739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length779
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930739 vs. ExPASy Swiss-Prot
Match: CTNS_ARATH (Cystinosin homolog OS=Arabidopsis thaliana GN=At5g40670 PE=2 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 7.038e-89
Identity = 151/209 (72.25%), Postives = 182/209 (87.08%), Query Frame = 3
Query:   51 MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQ 677
            M SWNS+PLEI+Y+++GWI+F +WS+SFYPQ+ILNFRR+SVVGLNFDFV+LNLTKHSSYMIYNV L+FS  +Q+QYF  YG  +MIPVAANDVAFS+HAV++T +TLFQI IYERG QKVS++++ IV VVW  AA+CFF+ALP HSWLWLI+ FN+IQV MT +KYIPQA MNF RKST G+SIGNILLDF GG  NY QM++QSIDQ
Sbjct:    1 MASWNSIPLEISYEIVGWIAFASWSISFYPQLILNFRRRSVVGLNFDFVMLNLTKHSSYMIYNVCLYFSPVIQKQYFDTYGDKEMIPVAANDVAFSIHAVVMTAVTLFQIFIYERGPQKVSRLAIGIVVVVWGFAAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRKSTVGWSIGNILLDFTGGLANYLQMVIQSIDQ 209          
BLAST of FC930739 vs. ExPASy Swiss-Prot
Match: CTNS_DICDI (Cystinosin homolog OS=Dictyostelium discoideum GN=ctns PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 8.986e-52
Identity = 93/201 (46.27%), Postives = 141/201 (70.15%), Query Frame = 3
Query:   75 LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSID 674
            L I   ++GWI F  WS+SFYPQVILNFR+K+V+GL+FDF+L N+T ++ Y ++N VL+F   V+ +Y+ KYG    IPV  +D+AF++H  +LT IT+ Q  IY+RG QK SK+ + I +++W++  V   +   N  +WLW+IN+++ +++ +T IKYIPQA +NF+ KST G+S+ N+LLDF GG  +  QM +   D
Sbjct:    4 LSIISIIIGWIYFACWSLSFYPQVILNFRKKNVIGLSFDFLLFNITGYACYSVFNSVLYFDKLVKNEYYDKYG--PPIPVQQSDIAFAIHGFVLTAITIIQCFIYDRGNQKNSKLGIGIATLIWVSLIVMTILGFSNVFTWLWVINYYSYVKLFITFIKYIPQAYLNFKNKSTSGWSVHNVLLDFSGGVLSLLQMFLDVAD 202          
BLAST of FC930739 vs. ExPASy Swiss-Prot
Match: CTNS_HUMAN (Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.214e-48
Identity = 100/202 (49.50%), Postives = 141/202 (69.80%), Query Frame = 3
Query:   66 SVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQS 668
            S  + I  QV+GWI FVAWS+SFYPQVI+N+RRKSV+GL+FDFV LNLT   +Y ++N+ L +   +++Q+  KY  + + PV +NDV FS+HAV+LT+I + Q  +YERG Q+VS  ++  + + WL A V   VA     +WL  +  F+ I++ +TL+KY PQA MNF  KST+G+SIGN+LLDF GG  +  QM +QS
Sbjct:  120 SSAISIINQVIGWIYFVAWSISFYPQVIMNWRRKSVIGLSFDFVALNLTGFVAYSVFNIGLLWVPYIKEQFLLKY-PNGVNPVNSNDVFFSLHAVVLTLIIIVQCCLYERGGQRVSWPAIGFLVLAWLFAFVTMIVAAVGVTTWLQFLFCFSYIKLAVTLVKYFPQAYMNFYYKSTEGWSIGNVLLDFTGGSFSLLQMFLQS 320          
BLAST of FC930739 vs. ExPASy Swiss-Prot
Match: CTNS_BOVIN (Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.214e-48
Identity = 97/199 (48.74%), Postives = 142/199 (71.36%), Query Frame = 3
Query:   75 LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFV-ALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQS 668
            + I  QV+GWI FVAWSVSFYPQVI N+RRKSVVGL+FDFV+LNL    +Y ++N+ LF+  ++++Q+  KY  + + PV +NDV FS+HAV LT++ + Q  +YERG Q+VS ++++ + + WL   +   + A+   +WL  +  F+ I++ +TL+KY PQA MNF  KST+G+SIGN+LLDF GG  +  QM +QS
Sbjct:  123 VSIINQVIGWIYFVAWSVSFYPQVITNWRRKSVVGLSFDFVVLNLMGFVAYSVFNIGLFWVPSIKEQFLLKY-PNGVNPVDSNDVFFSLHAVALTLVVIVQCLLYERGSQRVSWLAISFLVLSWLFTLIALIMAAVGATTWLQFLFCFSYIKLAVTLVKYFPQAYMNFHYKSTEGWSIGNVLLDFTGGSFSLLQMFLQS 320          
BLAST of FC930739 vs. ExPASy Swiss-Prot
Match: CTNS_MOUSE (Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.137e-46
Identity = 98/199 (49.25%), Postives = 135/199 (67.84%), Query Frame = 3
Query:   75 LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQS 668
            + I  QV+GWI F+AWSVSFYPQVI N+RRKSV+GL+FDF+ LNLT   +Y ++N+ L +   +Q+++  KY  + + PV +ND  FS+HAV LT+I + Q  +YERG Q+VS  S+  + + WL   V   VA     +WL  +  F+ I++I+TLIKY PQA MNF  KST G+SIG +LLDF GG  +  QM +QS
Sbjct:  123 VSIINQVIGWIYFMAWSVSFYPQVIQNWRRKSVIGLSFDFLALNLTGFVAYSVFNIGLLWVPYIQEEFLLKY-PNGVNPVDSNDAFFSLHAVALTLIVILQCCLYERGNQRVSWPSIGFLVLAWLFVLVTMIVAAVGITTWLQFLFCFSYIKLIITLIKYFPQAYMNFYYKSTKGWSIGGVLLDFTGGSFSLLQMFLQS 320          
BLAST of FC930739 vs. ExPASy Swiss-Prot
Match: CTNS_DROME (Cystinosin homolog OS=Drosophila melanogaster GN=CG17119 PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 6.455e-42
Identity = 89/195 (45.64%), Postives = 127/195 (65.13%), Query Frame = 3
Query:   93 VLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHS---WLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQS 668
            + GW+ FVAWSVSFYPQ+  N+RRKSV GLNFDF+ LN+   + Y ++N  L+F   +Q +Y  +Y    + PV  NDV FS+HA+  T IT+ Q   Y+R  Q+VS I+  I+++   A  V     L   S   WL  + + + +++ +T+IKY+PQA+MN+RRKST G+SIGNILLDF GG  +  QMI+ +
Sbjct:  134 IFGWVYFVAWSVSFYPQIWSNYRRKSVEGLNFDFLALNIVGFTLYSMFNCGLYFIEDLQNEYEVRYPLG-VNPVMLNDVVFSLHAMFATCITILQCFFYQRAQQRVSFIAYGILAI--FAVVVVVSAGLAGGSVIHWLDFLYYCSYVKLTITIIKYVPQALMNYRRKSTSGWSIGNILLDFTGGTLSMLQMILNA 325          
BLAST of FC930739 vs. ExPASy Swiss-Prot
Match: CTNS_CAEBR (Cystinosin homolog OS=Caenorhabditis briggsae GN=ctns-1 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.346e-39
Identity = 87/201 (43.28%), Postives = 126/201 (62.69%), Query Frame = 3
Query:   75 LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVS-KISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSID 674
            L I  Q++GW  F AWSVSFYPQ+ LNF+RKSVVGLNFDF+ LNL    +Y ++N++++++S V+  Y  +  R    PV  NDV F++HA L   +T+ Q   YER  Q++S K  + I+ +V           L   + L  +   + I++ +T  KY PQA  N++RKST G+SIGNILLDF GG  +  QM++Q+I+
Sbjct:  124 LAILIQIVGWTYFAAWSVSFYPQMYLNFKRKSVVGLNFDFLSLNLVGFGAYAMFNLLMYYNSHVKNIYSMENPRSPP-PVLLNDVVFAVHAFLACFVTILQCIFYERDQQRISTKCIILIIGLVSFGFVSVVVTVLNKITILDFVVSLSYIKMAVTCCKYFPQAYFNYQRKSTVGWSIGNILLDFTGGSLDILQMVLQAIN 323          
BLAST of FC930739 vs. ExPASy Swiss-Prot
Match: CTNS_CAEEL (Cystinosin homolog OS=Caenorhabditis elegans GN=ctns-1 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 2.296e-39
Identity = 89/202 (44.06%), Postives = 127/202 (62.87%), Query Frame = 3
Query:   75 LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVA--LPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSID 674
            L I  Q++GW  F AWS+SFYPQ+ LNF+RKSVVGLNFDF+ LNL    +Y I+N++++++S V+ +Y     R    PV  NDV F++HA L   IT+ Q   YER  Q VS   +A++ +V ++   C   A  L     L  +   + I++ +T  KY PQA  N+ RKST G+SIGNI+LDF GG  +  QMI+Q+++
Sbjct:  125 LAILIQIVGWTYFFAWSISFYPQMYLNFKRKSVVGLNFDFLSLNLVGFCAYAIFNLLMYYNSHVKNEYNIVNPRSPP-PVLLNDVVFAVHAFLACFITILQCLFYERDNQSVSSKCIALM-IVLISFGFCSAAATVLRKIQLLSFVTSLSYIKMAVTCCKYFPQAYFNYTRKSTVGWSIGNIMLDFTGGTLDILQMILQAVN 324          
BLAST of FC930739 vs. ExPASy Swiss-Prot
Match: ERS1_YEAST (Cystine transporter OS=Saccharomyces cerevisiae GN=ERS1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.338e-14
Identity = 60/206 (29.13%), Postives = 97/206 (47.09%), Query Frame = 3
Query:   93 VLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYER-------GVQKVSK-------ISMAIVSVVWLAAAVC-FFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQ 665
            +LG +   +WS+S YP +I N+R KS   ++ DFV+LN T   SY++ ++ L              GR ++      D  + +H  L+ ++ L Q+    R       G +K++         S+AI S++ +      ++    N   L   N    +++ M+LIKYIPQ   N  RKS D F I  + LD  GG  +  Q+I Q
Sbjct:    7 ILGIVYVTSWSISMYPPIITNWRHKSASAISMDFVMLN-TAGYSYLVISIFLQLYCWKMTGDESDLGRPKLTQF---DFWYCLHGCLMNVVLLTQVVAGARIWRFPGKGHRKMNPWYLRILLASLAIFSLLTVQFMYSNYWYDWHNSRTLAYCNNLFLLKISMSLIKYIPQVTHNSTRKSMDCFPIQGVFLDVTGGIASLLQLIWQ 208          
The following BLAST results are available for this feature:
BLAST of FC930739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
CTNS_ARATH7.038e-8972.25Cystinosin homolog OS=Arabidopsis thaliana GN=At5g... [more]
CTNS_DICDI8.986e-5246.27Cystinosin homolog OS=Dictyostelium discoideum GN=... [more]
CTNS_HUMAN1.214e-4849.50Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2[more]
CTNS_BOVIN1.214e-4848.74Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1[more]
CTNS_MOUSE1.137e-4649.25Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1[more]
CTNS_DROME6.455e-4245.64Cystinosin homolog OS=Drosophila melanogaster GN=C... [more]
CTNS_CAEBR1.346e-3943.28Cystinosin homolog OS=Caenorhabditis briggsae GN=c... [more]
CTNS_CAEEL2.296e-3944.06Cystinosin homolog OS=Caenorhabditis elegans GN=ct... [more]
ERS1_YEAST3.338e-1429.13Cystine transporter OS=Saccharomyces cerevisiae GN... [more]
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Properties
Property NameValue
Genbank descriptionC34010G06EF PostHarvC1 Citrus clementina cDNA clone C34010G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930739 ID=FC930739; Name=FC930739; organism=Citrus clementina; type=EST; length=779bp
GGGATCATTTGTCTTTGCGAATTGGTGACCGTCGGTCCGGTGGAGAGAAA
ATGGTGTCGTGGAATTCAGTTCCGTTGGAAATAACGTACCAAGTCCTCGG
ATGGATCTCATTCGTTGCGTGGTCCGTCAGTTTCTACCCGCAGGTCATCT
TAAACTTCCGTCGCAAAAGTGTTGTGGGATTGAACTTCGATTTCGTGTTG
CTGAATTTGACGAAGCATTCCTCCTACATGATTTACAACGTCGTCCTCTT
CTTTAGCTCCACCGTTCAGCAACAGTACTTTCAGAAGTACGGCCGCGATC
AGATGATTCCCGTGGCAGCAAATGATGTTGCGTTTTCAATGCATGCTGTT
CTCTTGACAATAATTACCCTGTTCCAAATTGCAATCTATGAACGTGGTGT
TCAAAAGGTATCTAAGATTTCTATGGCAATTGTCTCTGTTGTTTGGTTGG
CTGCCGCAGTTTGTTTCTTCGTAGCATTGCCAAACCATTCTTGGCTTTGG
CTCATCAACTTCTTTAACGCTATTCAAGTTATTATGACACTCATCAAGTA
TATTCCACAGGCCATCATGAACTTTAGGCGAAAGAGTACAGATGGTTTCA
GCATTGGAAATATATTACTTGATTTTCTTGGAGGGTGTACTAATTACTCA
CAGATGATTGTTCAGTCTATTGATCAAATTCTTGGGTTAACTTTTATGGA
ATATAGGGAAGACATTGCTATCTCTGGTATCCGTAGTCTTTGATCTTCTT
TTCATATGTCAGCATTATGTGCTATATCC
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