FC930790

Overview
NameFC930790
Unique NameFC930790
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930790 vs. ExPASy Swiss-Prot
Match: RR5_SPIOL (30S ribosomal protein S5, chloroplastic OS=Spinacia oleracea GN=rps5 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.228e-21
Identity = 70/199 (35.18%), Postives = 93/199 (46.73%), Query Frame = 2
Query:  146 TPRLSFLSTAKLTRLPKLTLSTVLVRASESDKPN----------------------GIVFDDFNNPDEDAAVFXXXXXXXXXXXXXSFDELPMETEDEIAAAYEELYGPAYAGVSVLGNDVYVMDSKAKKTSAFG-ETKKEKVKDGFEEXXXXXXXXXXXXXXXXXLKFRAIXXXXXXXXXXXXXXXXXXESIAAVQKS 673
            TP  + L+T    R+P    +T L+  S S KP                        I F + +NPDE+   F             + DE P E+E+EIA AYEELYG AY+G S+LGNDVY MDSK KK + FG ++KKEK++DGFEE                 ++FRAI                  E ++AVQK+
Sbjct:    8 TPSATSLTTLH-RRIPLFPTTTTLLSLSSSSKPLFLSLSSTRSFPTHLYCIKKDDIDITFFEQDNPDEEIT-FDPPEKPEGYIPPRAVDEPPFESEEEIALAYEELYGAAYSGESLLGNDVYAMDSKIKKATGFGSKSKKEKIRDGFEENVVQVRRVTKVVKGGKHMRFRAIVVVGDKKGQVGVGVGKAKEVVSAVQKA 204          
BLAST of FC930790 vs. ExPASy Swiss-Prot
Match: RR5_ARATH (30S ribosomal protein S5, chloroplastic OS=Arabidopsis thaliana GN=rps5 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 65/159 (40.88%), Postives = 80/159 (50.31%), Query Frame = 2
Query:  206 STVLVRASESDKPNGIVFDDFNNPDEDAAVFXXXXXXXXXXXXXSFDELPMETEDEIAAAYEELYGPAYAGVSVLGNDVYVMDSKAKKTSAF-GETKKEKVKDGFEEXXXXXXXXXXXXXXXXXLKFRAIXXXXXXXXXXXXXXXXXXESIAAVQKSPL 679
            S  LV+AS +D    I F+D         VF              FDE   ETE+EIA A+EELYGPAY+G S+LG D+YVMDSK KK+S   G+ KK+K++DGFEE                 LKFRAI                  E +AAVQKS +
Sbjct:   44 SLTLVKASSTDTET-IFFEDETPEITANVVFDPPIAPEGFVSPPYFDEGSDETEEEIATAFEELYGPAYSGESMLGKDIYVMDSKHKKSSGIGGKPKKDKIRDGFEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAI 201          
The following BLAST results are available for this feature:
BLAST of FC930790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RR5_SPIOL9.228e-2135.1830S ribosomal protein S5, chloroplastic OS=Spinaci... [more]
RR5_ARATH2.056e-2040.8830S ribosomal protein S5, chloroplastic OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionC34109A11EF PostHarvP1 Citrus clementina cDNA clone C34109A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930790 ID=FC930790; Name=FC930790; organism=Citrus clementina; type=EST; length=709bp
CCCAAGAGACTGAACTGATCTTCCTTTCTTCTCCACTCTCCCCCAAACGC
AGCGTTACATACACATCACCAATGGCAACAACAGCATCAGCAACAAGAGC
AACCCTTTCTCTCTCGTCATTGTCTTGTCTCTATCTCTTCACTCGACTCC
CCGCCTCTCATTCCTCTCCACTGCAAAACTCACCAGGCTCCCAAAACTCA
CCCTCTCGACCGTCCTCGTCAGAGCCTCCGAATCCGACAAACCAAACGGC
ATCGTTTTCGACGACTTCAACAACCCAGATGAAGACGCCGCCGTTTTCGA
CCCACCGACGCCCCCGGAGGATTACACTCCCCCGCCCTCCTTCGACGAGC
TCCCAATGGAAACCGAGGACGAAATTGCCGCTGCTTACGAAGAATTGTAC
GGACCCGCGTACGCGGGAGTCAGCGTCTTGGGAAATGATGTTTATGTGAT
GGACTCGAAGGCGAAAAAGACGAGTGCTTTTGGGGAAACGAAGAAGGAGA
AAGTGAAGGATGGGTTTGAAGAAAGAGTGGTTCAAGTCAGAAGAGTGACG
AAGGTGGTCAAAGGAGGGAAGCAGTTGAAGTTTAGAGCTATTGTTGTGGT
TGGTGATAAGAAAGGCCAAGTTGGTGTTGGCGTTGCCAAAGCTAAAGAAA
GTATTGCTGCCGTACAGAAATCGCCGTTGATGCTAGGAGGAAATATGTAC
TGTCCCTAT
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