FC930860

Overview
NameFC930860
Unique NameFC930860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930860_ssr457 microsatellite FC930860_ssr457:457..468. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14098 contig Ccv1_Contig14098:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 1.839e-90
Identity = 164/197 (83.25%), Postives = 184/197 (93.40%), Query Frame = 3
Query:  111 MPIYRIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGAS 701
            MPI RIAIGTPGEAS PDA++AA AEFFSM+IFVFAGQGSGMA+ KLT  G +TPAGL++ASL+HAFALFVAVSVGAN+SGGHVNPAVTFGAF+GG+ITLLR+ILYWIAQLLG+VVACLLLK STGG+ET+AF+LS GV+ WNAVVFEIVMTFGLVYTVYATAVDPKKG++G IAP+AIG IVGANIL GGAFDGAS
Sbjct:    1 MPINRIAIGTPGEASRPDAIRAAFAEFFSMVIFVFAGQGSGMAYGKLTGDGPATPAGLVAASLSHAFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLKVSTGGMETAAFSLSYGVTPWNAVVFEIVMTFGLVYTVYATAVDPKKGDIGIIAPLAIGLIVGANILVGGAFDGAS 197          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 2.033e-89
Identity = 161/197 (81.73%), Postives = 181/197 (91.88%), Query Frame = 3
Query:  111 MPIYRIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGAS 701
            MP+ RIA+G PGE SHPD  KAA+AEF SMLIFVFAG GSGMAFSKLTDGG +TP+GLI+ASLAHA ALFVAV+VGANISGGHVNPAVTFGAFVGG+I+L+++++YW+AQLLGSVVACLLLK +TGG    AF+LS+GV +WNAVVFEIVMTFGLVYTVYATAVDPKKG+LG IAPIAIGFIVGANILAGGAFDGAS
Sbjct:    1 MPVSRIAVGAPGELSHPDTAKAAVAEFISMLIFVFAGSGSGMAFSKLTDGGGTTPSGLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLKIATGGAAVGAFSLSAGVGAWNAVVFEIVMTFGLVYTVYATAVDPKKGDLGVIAPIAIGFIVGANILAGGAFDGAS 197          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 1.457e-87
Identity = 161/197 (81.73%), Postives = 179/197 (90.86%), Query Frame = 3
Query:  111 MPIYRIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGAS 701
            MP+ RIA+G PGE SHPD  KAA+AEF S LIFVFAG GSGMAFSKLTDGGA+TPAGLI+ASLAHA ALFVAVSVGANISGGHVNPAVTFGAFVGG+I+LL++++YW+AQLLGSVVACLLLK +TGG    AF+LS+GV + NAVV E+VMTFGLVYTVYATAVDPKKG+LG IAPIAIGFIVGANILAGGAFDGAS
Sbjct:    1 MPVSRIAVGAPGELSHPDTAKAAVAEFISTLIFVFAGSGSGMAFSKLTDGGAATPAGLIAASLAHALALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLKALVYWVAQLLGSVVACLLLKIATGGAALGAFSLSAGVGAMNAVVLEMVMTFGLVYTVYATAVDPKKGDLGVIAPIAIGFIVGANILAGGAFDGAS 197          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 3.038e-85
Identity = 162/197 (82.23%), Postives = 174/197 (88.32%), Query Frame = 3
Query:  111 MPIYRIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGAS 701
            MPI  IA+G+  E  HP ALKAALAEF S LIFVFAGQGSGMAFSKLT GGA+TPAGLI+A++AHAFALFVAVSVGANISGGHVNPAVTFGAFVGG+ITL R +LYWIAQLLGS VAC LL+FSTGGL T  F L +GVS W A+V EIVMTFGLVYTVYATAVDPKKG+LGTIAPIAIGFIVGANIL GGAFDGAS
Sbjct:    1 MPIRNIAVGSHQEVYHPGALKAALAEFISTLIFVFAGQGSGMAFSKLTGGGATTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWIAQLLGSTVACFLLRFSTGGLATGTFGL-TGVSVWEALVLEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILVGGAFDGAS 196          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 3.967e-85
Identity = 159/197 (80.71%), Postives = 175/197 (88.83%), Query Frame = 3
Query:  111 MPIYRIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGAS 701
            MPI  IAIG P EA+ PDALKAALAEF S LIFV AG GSGMAF+KLT+ GA+TP+GL++A++AHAF LFVAVSVGANISGGHVNPAVTFGAF+GG+ITLLR ILYWIAQLLGSVVACL+LKF+TGGL   AF LS+GV   NA VFEIVMTFGLVYTVYATA+DPK G+LGTIAPIAIGFIVGANILAGGAF GAS
Sbjct:    1 MPIRNIAIGRPDEATRPDALKAALAEFISTLIFVVAGSGSGMAFNKLTENGATTPSGLVAAAVAHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLILKFATGGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVYTVYATAIDPKNGSLGTIAPIAIGFIVGANILAGGAFSGAS 197          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 7.482e-84
Identity = 159/197 (80.71%), Postives = 172/197 (87.31%), Query Frame = 3
Query:  111 MPIYRIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGAS 701
            MPI RIA+G+  E  HP ALKAA AEF S LIFVFAGQGSGMAFSKLT GG +TPAGLI+A++AHAFALFVAVSVGANISGGHVNPAVTFGAFVGG+ITL R +LYW+AQLLGS VAC LL+FSTGG  T  F L +GVS W A+V EIVMTFGLVYTVYATAVDPKKG+LGTIAPIAIGFIVGANIL GGAFDGAS
Sbjct:    1 MPINRIALGSHQEVYHPGALKAAFAEFISTLIFVFAGQGSGMAFSKLTGGGPTTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWVAQLLGSTVACFLLRFSTGGQATGTFGL-TGVSVWEALVLEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILVGGAFDGAS 196          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 296.59 bits (758), Expect = 8.560e-80
Identity = 153/198 (77.27%), Postives = 169/198 (85.35%), Query Frame = 3
Query:  111 MPIYRIAIG-TPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGAS 701
            MP   IAIG    E  HP+AL+AALAEF S LIFVFAG GSG+AF+K+TD GA+TP+GL++A+LAHAF LFVAVSVGANISGGHVNPAVTFG  +GG+ITLLR ILYWIAQLLGSV AC LL F+TGG    AF LS+GV S NA+VFEIVMTFGLVYTVYATAVDPK G+LGTIAPIAIGFIVGANILAGGAF GAS
Sbjct:    1 MPTRNIAIGGVQEEVYHPNALRAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLVAAALAHAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAACFLLSFATGGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTVYATAVDPKNGSLGTIAPIAIGFIVGANILAGGAFSGAS 198          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 3.976e-77
Identity = 152/197 (77.16%), Postives = 165/197 (83.76%), Query Frame = 3
Query:  111 MPIYRIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGAS 701
            MPI  IA+GTP EA+HPD LKA LAEF S  IFVFAG GSG+A++KLT+ GA+TPAGLISAS+AHAFALFVAVSVGANISGGHVNPAVTFGAFVGG+ITLLR I+Y IAQLLGS+VA  LL F T      AF LS GV    A+V EIVMTFGLVYTVYATAVDPKKGN+G IAPIAIGFIVGANIL GGAF GAS
Sbjct:    1 MPIRNIAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVTAS-SVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGAS 196          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 279.641 bits (714), Expect = 1.083e-74
Identity = 150/197 (76.14%), Postives = 163/197 (82.74%), Query Frame = 3
Query:  111 MPIYRIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGAS 701
            MPI  IA+GTP EA+HPD LKA LAEF S  IFVFAG GSG+A++KLT+ GA+TPAGLISAS+AHAFALFVAVSVGANISGGHVNPAV FGAFVGG+ITLLR I+Y IAQLLGS+V   LL F T      AF LS GV    A+V EIVMTFGLVYTVYATAVDPKKGN+G IAPIAIGFIVGANIL GGAF GAS
Sbjct:    1 MPIRNIAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAV-FGAFVGGNITLLRGIVYIIAQLLGSIVCSALLVFVTAS-SVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGAS 195          
BLAST of FC930860 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.280e-63
Identity = 120/193 (62.18%), Postives = 147/193 (76.17%), Query Frame = 3
Query:  123 RIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGAS 701
            ++A G+ G++    ++KA +AEF + L+FVFAG GS +AF +LT+GGA  PAGL++ ++AHA ALFV VSV AN SGGH+NPAVTFG  VGGHIT+L  + YW+AQLLG+ VACLLL+F T G       +S G +    VVFEIV+TF LVYTVYATA DPKKG+LGTIAPIAIGFIVGANILA G F G S
Sbjct:    3 KLAFGSVGDSFSVTSIKAYVAEFIATLLFVFAGVGSAIAFGQLTNGGALDPAGLVAIAVAHALALFVGVSVAANTSGGHLNPAVTFGLAVGGHITVLTGLFYWVAQLLGASVACLLLRFVTHGKAIPTHGVSGGTTELEGVVFEIVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGS 195          
The following BLAST results are available for this feature:
BLAST of FC930860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
TIP13_ARATH1.839e-9083.25Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIP12_ORYSJ2.033e-8981.73Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
TIP12_MAIZE1.457e-8781.73Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
TIP11_ORYSJ3.038e-8582.23Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIP11_ARATH3.967e-8580.71Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIP11_MAIZE7.482e-8480.71Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
TIP12_ARATH8.560e-8077.27Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
TIP1_MEDTR3.976e-7777.16Probable aquaporin TIP-type OS=Medicago truncatula... [more]
TIP1_MEDSA1.083e-7476.14Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
TIP22_MAIZE7.280e-6362.18Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34109G11EF PostHarvP1 Citrus clementina cDNA clone C34109G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930860 ID=FC930860; Name=FC930860; organism=Citrus clementina; type=EST; length=703bp
GACAAACCGCTACGCAATATAAAACGGAGCACAAAACAGAGCCAGCAAGC
TTGTAAGAAGCCTTTTGAGCTAAAACAAAATCGTTTTTCTTGACAAAATT
TTCGATAAAAATGCCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGG
CAAGCCATCCTGATGCGTTAAAGGCGGCTCTAGCTGAGTTTTTCTCGATG
CTTATTTTTGTTTTCGCCGGCCAGGGATCCGGGATGGCCTTTAGCAAGCT
AACGGATGGCGGGGCGTCCACGCCGGCCGGTCTTATATCTGCATCACTGG
CTCATGCATTTGCCCTATTTGTGGCTGTTTCAGTTGGTGCAAATATTTCT
GGGGGTCACGTGAACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCA
CATTACATTGTTGAGGAGCATCCTGTATTGGATTGCACAGTTGCTAGGAT
CAGTTGTTGCTTGCTTGCTGCTCAAGTTTTCCACCGGTGGATTGGAAACA
TCGGCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTT
TGAGATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAG
TGGATCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTGCAATCGGT
TTCATTGTTGGTGCCAACATTTTGGCTGGTGGCGCTTTTGATGGTGCATC
AAT
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