FC930867

Overview
NameFC930867
Unique NameFC930867
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15226 contig Ccv1_Contig15226:1..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930867 vs. ExPASy Swiss-Prot
Match: PROSC_MOUSE (Proline synthetase co-transcribed bacterial homolog protein OS=Mus musculus GN=Prosc PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.564e-23
Identity = 73/209 (34.93%), Postives = 106/209 (50.72%), Query Frame = 3
Query:  117 LRSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP-----DDLEWHFIGNLQSNKVKPLLGDIHGQPFLD*KSNLIASAFCVAQLYLTFMRE*NMMSDLKLIYCFAAGVPNLAMVESVVNEKIAGRLNRMVETMG-RKPLKVLVQVNTSGEESKSGVEPSGCLELVKHXSQTVRILSFV 719
            LR+V +RV Q+  R  R  P  + R+VAVSKTKP  ++ + Y  G R FGENYVQE++EKA+         +++WHFIG+LQ   V  L+                                                VPNL+M+E+V + K+A ++N   +  G  +PLKV+VQ+NTSGE+SK G+ PS  + +V+H   +   L FV
Sbjct:   17 LRAVNERVQQSVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLEKASNPKILSSCPEIKWHFIGHLQKQNVNKLM-----------------------------------------------AVPNLSMLETVDSVKLADKVNSSWQKKGPTEPLKVMVQINTSGEDSKHGLLPSETIAVVEHIKASCPSLEFV 178          
BLAST of FC930867 vs. ExPASy Swiss-Prot
Match: PROSC_HUMAN (Proline synthetase co-transcribed bacterial homolog protein OS=Homo sapiens GN=PROSC PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.564e-23
Identity = 75/209 (35.89%), Postives = 105/209 (50.24%), Query Frame = 3
Query:  117 LRSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAA-----QLPDDLEWHFIGNLQSNKVKPLLGDIHGQPFLD*KSNLIASAFCVAQLYLTFMRE*NMMSDLKLIYCFAAGVPNLAMVESVVNEKIAGRLNRMVETMGR-KPLKVLVQVNTSGEESKSGVEPSGCLELVKHXSQTVRILSFV 719
            LR+V +RV QA  R  R  P  + R+VAVSKTKP  ++ + Y  G R FGENYVQE++EKA+      L  +++WHFIG+LQ   V  L+                                                VPNL M+E+V + K+A ++N   +  G  + LKV+VQ+NTSGEESK G+ PS  + +V+H +     L FV
Sbjct:   17 LRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLEKASNPKILSLCPEIKWHFIGHLQKQNVNKLM-----------------------------------------------AVPNLFMLETVDSVKLADKVNSSWQRKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFV 178          
BLAST of FC930867 vs. ExPASy Swiss-Prot
Match: PROSC_DICDI (Proline synthetase co-transcribed bacterial homolog protein OS=Dictyostelium discoideum GN=prosc PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.564e-23
Identity = 73/204 (35.78%), Postives = 100/204 (49.02%), Query Frame = 3
Query:  117 LRSVIQRVHQAAERSSRPPDR--IRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD--DLEWHFIGNLQSNKVKPLLGDIHGQPFLD*KSNLIASAFCVAQLYLTFMRE*NMMSDLKLIYCFAAGVPNLAMVESVVNEKIAGRL----------NRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKH 686
            L S  + +    E  S   DR  +++VAVSKTKP  +IR +Y+ GHR FGENY+QE+V K+ +L +  +++WHFIG++QSNK K L                                                 V NL +VE+V N+KI  +L          N        K L +++QVNTSGEESKSG +P  CL+LVKH
Sbjct:   10 LISSYKNIKDRVEIISNKFDRHNVKLVAVSKTKPTEMIRILYDKGHRHFGENYIQELVSKSEELSELNEIKWHFIGSIQSNKSKIL-----------------------------------------------TSVKNLYVVETVENKKILDKLAKSLLNNEENNNNNNNNNNKKLNIMIQVNTSGEESKSGCKPEECLDLVKH 166          
BLAST of FC930867 vs. ExPASy Swiss-Prot
Match: PROSC_PONAB (Proline synthetase co-transcribed bacterial homolog protein OS=Pongo abelii GN=PROSC PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.484e-23
Identity = 74/209 (35.41%), Postives = 105/209 (50.24%), Query Frame = 3
Query:  117 LRSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAA-----QLPDDLEWHFIGNLQSNKVKPLLGDIHGQPFLD*KSNLIASAFCVAQLYLTFMRE*NMMSDLKLIYCFAAGVPNLAMVESVVNEKIAGRLNRMVETMGR-KPLKVLVQVNTSGEESKSGVEPSGCLELVKHXSQTVRILSFV 719
            LR+V +RV QA     R  P  + R+VAVSKTKP  ++ + Y  G R FGENYVQE++EKA+      L  +++WHFIG+LQ   V  L+                                                VPNL ++E+V + K+AG++N   +  G  + LKV+VQ+NTSGEESK G+ PS  + +V+H +     L FV
Sbjct:   17 LRAVNERVQQAVALRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLEKASNPKILSLGPEIKWHFIGHLQKQNVNKLM-----------------------------------------------AVPNLFVLETVDSVKLAGKVNSSWQKKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFV 178          
BLAST of FC930867 vs. ExPASy Swiss-Prot
Match: PROSC_BOVIN (Proline synthetase co-transcribed bacterial homolog protein OS=Bos taurus GN=PROSC PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.729e-22
Identity = 73/209 (34.93%), Postives = 103/209 (49.28%), Query Frame = 3
Query:  117 LRSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP-----DDLEWHFIGNLQSNKVKPLLGDIHGQPFLD*KSNLIASAFCVAQLYLTFMRE*NMMSDLKLIYCFAAGVPNLAMVESVVNEKIAGRLNRMVETMGR-KPLKVLVQVNTSGEESKSGVEPSGCLELVKHXSQTVRILSFV 719
            LR+V +RV QA  R  R  P  + R+VAVSKTKP  ++ + Y  G R FGENYVQE++EKA+         +++WHFIG+LQ   V  L+                                                VPNL+M+E+V + K+A ++N   +  G  + LKV+VQ+NTSGE SK G+ P+    LV+H +     L FV
Sbjct:   17 LRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYSHGQRTFGENYVQELLEKASNPQILSSCPEIKWHFIGHLQKQNVNKLM-----------------------------------------------AVPNLSMLETVDSVKLADKVNSAWQKKGSPERLKVMVQINTSGEASKHGLPPAEMAALVEHINAKCPSLEFV 178          
BLAST of FC930867 vs. ExPASy Swiss-Prot
Match: Y112_PASMU (UPF0001 protein PM0112 OS=Pasteurella multocida GN=PM0112 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.121e-21
Identity = 70/192 (36.46%), Postives = 94/192 (48.96%), Query Frame = 3
Query:  117 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKA---AQLPDDLEWHFIGNLQSNKVKPLLGDIHGQPFLD*KSNLIASAFCVAQLYLTFMRE*NMMSDLKLIYCFAAGVPNLAMVESVVNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVK 683
            L  + Q +  A +++ RP   ++++AVSKTKPV  I Q Y+AG   FGENYVQE VEK    AQ    LEWHFIG LQSNK K                 L+A  F                                  ++++  +KIA RLN       +KPL VL+Q+N S E+SKSG++P+  L+L K
Sbjct:    7 LAQIQQNIQHAVQQAKRPESAVKLLAVSKTKPVEDIYQAYQAGQTAFGENYVQEGVEKIQYFAQKNIPLEWHFIGPLQSNKTK-----------------LVAEHF--------------------------------DWMQTLDRKKIADRLNEQ-RPHYKKPLNVLIQINISDEDSKSGIQPNEMLDLAK 148          
BLAST of FC930867 vs. ExPASy Swiss-Prot
Match: YKC9_SCHPO (UPF0001 protein C644.09 OS=Schizosaccharomyces pombe GN=SPAC644.09 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.239e-20
Identity = 62/168 (36.90%), Postives = 83/168 (49.40%), Query Frame = 3
Query:  180 IRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLGDIHGQPFLD*KSNLIASAFCVAQLYLTFMRE*NMMSDLKLIYCFAAGVPNLAMVESVVNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVK 683
            + +VAVSK  PV  + + Y AG R FGENY+QE ++K   +PDD++WHFIG+LQS+K K +                                               A V NL  +E++  EK A  +N   E + + PL V +QVNTSGEE+K GV PS  LEL K
Sbjct:   24 VLLVAVSKFHPVETLMEAYNAGQRHFGENYMQEFLKKVELMPDDVQWHFIGSLQSSKCKKI-----------------------------------------------ASVKNLYSIETIDTEKKARLVNSAREAL-QLPLNVYIQVNTSGEENKGGVTPSKVLELCK 143          
BLAST of FC930867 vs. ExPASy Swiss-Prot
Match: Y090_HAEIN (UPF0001 protein HI0090 OS=Haemophilus influenzae GN=HI0090 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.239e-20
Identity = 67/193 (34.72%), Postives = 91/193 (47.15%), Query Frame = 3
Query:  117 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD---DLEWHFIGNLQSNKVKPLLGDIHGQPFLD*KSNLIASAFCVAQLYLTFMRE*NMMSDLKLIYCFAAGVPNLAMVESVVNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKH 686
            L  + Q++  A +  +R  + ++++AVSKTKP+S I   Y+AG   FGENYVQE VEK         +LEWHFIG LQSNK +                 L+A  F                                  ++++   KIA RLN    T  + PL VL+Q+N S EESKSG++P   L L KH
Sbjct:    7 LNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQEGVEKIQYFESQGINLEWHFIGPLQSNKTR-----------------LVAEHF--------------------------------DWMQTLDRAKIADRLNEQRPT-NKAPLNVLIQINISDEESKSGIQPEEMLTLAKH 149          
BLAST of FC930867 vs. ExPASy Swiss-Prot
Match: YPI1_VIBAL (UPF0001 protein in pilT-proC intergenic region OS=Vibrio alginolyticus PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.881e-19
Identity = 68/198 (34.34%), Postives = 92/198 (46.46%), Query Frame = 3
Query:  117 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEK----AAQLPDD-LEWHFIGNLQSNKVKPLLGDIHGQPFLD*KSNLIASAFCVAQLYLTFMRE*NMMSDLKLIYCFAAGVPNLAMVESVVNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHXSQ 695
            +  +  ++    ++  R P+ ++++AVSKTKPV  I + Y+AG   FGENYVQE V K    A   PD+ +EWHFIG +QSN                 KS L+A  F                                  V ++   KIA RLN        KPL+VL+QVNTSGE SKSGV  +   EL +  S+
Sbjct:    8 IEHITSQIRYDEQKCGRTPESVQLLAVSKTKPVEAILEAYQAGQTAFGENYVQEGVSKVQHFAEHYPDNRIEWHFIGPIQSN-----------------KSRLVAEHF--------------------------------DWVHTIDRTKIAQRLNDQ-RPSELKPLQVLIQVNTSGEASKSGVTEAEVFELAELISR 155          
BLAST of FC930867 vs. ExPASy Swiss-Prot
Match: Y394_PSEAE (UPF0001 protein PA0394 OS=Pseudomonas aeruginosa GN=PA0394 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.584e-18
Identity = 64/194 (32.99%), Postives = 86/194 (44.33%), Query Frame = 3
Query:  117 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD-DLEWHFIGNLQSNKVKPLLGDIHGQPFLD*KSNLIASAFCVAQLYLTFMRE*NMMSDLKLIYCFAAGVPNLAMVESVVNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHXSQ 695
            +  V  R+ +AA+ + R P  + ++AVSKTKP + +R+ + AG R FGENY+QE + K A+L D  L WHFIG +QSNK +P+                                                   +   V SV   KIA RL+      G  PL V +QVN SGE SKSG  P     L +   Q
Sbjct:    8 IAKVAARIREAAQAAGRDPATVGLLAVSKTKPAAAVREAHAAGLRDFGENYLQEALGKQAELADLPLNWHFIGPIQSNKTRPI-------------------------------------------------AEHFQWVHSVDRLKIAQRLSEQ-RPAGLPPLNVCLQVNVSGEASKSGCAPEDLPALAEAVKQ 151          
The following BLAST results are available for this feature:
BLAST of FC930867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PROSC_MOUSE1.564e-2334.93Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_HUMAN1.564e-2335.89Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_DICDI1.564e-2335.78Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_PONAB3.484e-2335.41Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_BOVIN1.729e-2234.93Proline synthetase co-transcribed bacterial homolo... [more]
Y112_PASMU1.121e-2136.46UPF0001 protein PM0112 OS=Pasteurella multocida GN... [more]
YKC9_SCHPO1.239e-2036.90UPF0001 protein C644.09 OS=Schizosaccharomyces pom... [more]
Y090_HAEIN1.239e-2034.72UPF0001 protein HI0090 OS=Haemophilus influenzae G... [more]
YPI1_VIBAL8.881e-1934.34UPF0001 protein in pilT-proC intergenic region OS=... [more]
Y394_PSEAE2.584e-1832.99UPF0001 protein PA0394 OS=Pseudomonas aeruginosa G... [more]

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Properties
Property NameValue
Genbank descriptionC34109H06EF PostHarvP1 Citrus clementina cDNA clone C34109H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930867 ID=FC930867; Name=FC930867; organism=Citrus clementina; type=EST; length=726bp
GGAAGAATCAGGAACATGAAGAAGAGCGCAAGAGGAGAGAGAATCATATC
AACGAACAAGTAGAAGCAGAAACCATGGCTGCGTCTGCCGCCACAGATGG
CGTTGCAGCGACGGCGCTTCGGTCCGTGATCCAACGGGTCCACCAAGCCG
CCGAGAGATCCAGTCGCCCGCCGGACCGGATTCGAATCGTCGCTGTCAGC
AAAACCAAACCGGTCTCAGTAATCCGTCAGGTTTATGAGGCCGGTCACCG
ATGTTTCGGTGAAAACTACGTTCAAGAAATAGTGGAAAAGGCGGCTCAGC
TTCCAGATGATCTAGAATGGCATTTCATTGGGAACCTGCAGAGCAATAAA
GTGAAACCTTTATTGGGTGATATTCATGGACAACCTTTTCTTGATTAAAA
GTCAAATCTAATTGCATCTGCATTTTGTGTCGCACAACTTTATCTCACAT
TCATGAGAGAATAAAATATGATGTCTGATTTAAAACTCATCTACTGTTTT
GCAGCTGGTGTGCCTAACCTGGCAATGGTAGAAAGTGTGGTCAACGAGAA
GATTGCAGGTCGTCTTAATCGTATGGTTGAAACCATGGGAAGGAAGCCTT
TAAAAGTCTTGGTTCAAGTGAATACCAGTGGAGAAGAATCGAAATCTGGA
GTTGAGCCTTCAGGGTGTCTGGAACTTGTGAAACATGNTAGTCAAACTGT
CCGAATCTTGAGTTTTGTGGCCTATG
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