FC930872

Overview
NameFC930872
Unique NameFC930872
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15228 contig Ccv1_Contig15228:1..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC930872 vs. ExPASy Swiss-Prot
Match: SKI16_ARATH (F-box protein SKIP16 OS=Arabidopsis thaliana GN=SKIP16 PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.035e-54
Identity = 102/165 (61.82%), Postives = 123/165 (74.55%), Query Frame = 1 
Query:  187 MGLESVGDLALNVILSGLGPKDTAKVACLSKGFKAAASEECLWSKFCXXXXXXXXXXXXXGNPAPSFKAAYQIWREAFGMYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGSMGLIGGYS 681
            MGLE  GDL L+++LS +GP++TA+VAC+SK  K +ASEE LWS FC             G+PAPSFK AYQ+WRE+F MYPW LVKRV+ CWD LK WL  NFPEAKATLRKG +E D+Q+ E SLKVKLP+PTR+LYRF DGQE  + +    GS+GLIGGYS
Sbjct:    1 MGLEDAGDLVLHIVLSKIGPENTARVACVSKRLKVSASEESLWSIFCSNDLNISTPLDPHGDPAPSFKRAYQLWRESFRMYPWNLVKRVRLCWDNLKQWLTLNFPEAKATLRKGVTEDDLQEFETSLKVKLPLPTRLLYRFVDGQELSSPNGLD-GSLGLIGGYS 164
The following BLAST results are available for this feature:
BLAST of FC930872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SKI16_ARATH2.035e-5461.82F-box protein SKIP16 OS=Arabidopsis thaliana GN=SK... [more]
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Properties
Property NameValue
Genbank descriptionC34109H11EF PostHarvP1 Citrus clementina cDNA clone C34109H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930872 ID=FC930872; Name=FC930872; organism=Citrus clementina; type=EST; length=684bp
GAAACGAAACCACATAAAACATAAGTAACAAAGGTTATCACTCACGGTCA
CGGAGATGTGTGTACGAAAGCTACACACCCTTTGTCTTTGTCTTCTTCAT
CTCATAAATCTCTTACTCGACCGACATGACAACAATATTCACCTGAACTG
AGCGAAGGGAGAGACCCAAAAAAAAAAAAAAAAATTATGGGTTTGGAGAG
TGTTGGCGATTTGGCTTTGAACGTAATACTATCAGGGCTGGGGCCAAAAG
ACACGGCCAAAGTGGCATGTCTCAGCAAAGGATTTAAGGCTGCTGCCTCT
GAAGAGTGTCTCTGGTCCAAATTTTGCTCCGATGATCTTGATCTTGCCTC
CCCTCTTGACCCTCTTGGAAACCCTGCTCCTTCTTTCAAGGCAGCTTATC
AGATATGGCGGGAAGCTTTTGGCATGTATCCATGGCCTCTTGTCAAACGA
GTTAAAAGATGTTGGGATAGACTTAAAAACTGGTTGGCGGAAAATTTCCC
AGAGGCTAAGGCTACTCTTCGAAAGGGTGCATCAGAAGCAGATATTCAAC
AGCTGGAAAAAAGTTTGAAAGTTAAGCTGCCCGTCCCGACAAGGATTCTC
TATCGTTTTTGTGATGGTCAAGAATGCCAGACTGATGATTTTGAAAGCAT
AGGTTCAATGGGCCTCATTGGTGGATACTCTTTT
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