FC930877

Overview
NameFC930877
Unique NameFC930877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13820 contig Ccv1_Contig13820:1..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930877 vs. ExPASy Swiss-Prot
Match: P2C33_ARATH (Probable protein phosphatase 2C 33 OS=Arabidopsis thaliana GN=PPC6-1 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.161e-49
Identity = 97/173 (56.07%), Postives = 118/173 (68.21%), Query Frame = 2
Query:  173 MGSCFSAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPSFDYRREEPLHRIPGRLFLNGSSEIASLFTQQGKKGTNQDAMIVWENFASRADTIFCGVFDGHGPYGHMVAKRVRDSLPLKLSSHWEVNITSEEVLREISINTAGSI----NSED----TSFVSADEEPRASAD 667
            MGSC SAE                             N SFDYRREEPL+++PGR+FLNGS+E+A ++TQQGKKG NQDAM+VWENF SR DTIFCGVFDGHGPYGHMVAKRVRD+LPLKLS++WE  +  E VL+ I+ +T  ++    N ED     +FV+A+EEPR SAD
Sbjct:    1 MGSCLSAESRSPRPGSPCSPAFSVRKRKNSKKRPGSRNSSFDYRREEPLNQVPGRMFLNGSTEVACIYTQQGKKGPNQDAMVVWENFGSRTDTIFCGVFDGHGPYGHMVAKRVRDNLPLKLSAYWEAKVPVEGVLKAITTDTVNNVTNINNPEDAAAAAAFVTAEEEPRTSAD 173          
BLAST of FC930877 vs. ExPASy Swiss-Prot
Match: P2C74_ARATH (Probable protein phosphatase 2C 74 OS=Arabidopsis thaliana GN=At5g36250 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.434e-41
Identity = 83/122 (68.03%), Postives = 95/122 (77.87%), Query Frame = 2
Query:  290 SFDYRREEPLHRIPGRLFLNGSSEIASLFTQQGKKGTNQDAMIVWENFASRADTIFCGVFDGHGPYGHMVAKRVRDSLPLKLSSHWEVNITSEEVLREISINTAGSINSEDTSFVSADEEPR 655
            SFD   E  LHRIPGR+FLNGS++  SLF+QQGKKG NQDAMIVWENF S  DT+FCGVFDGHGPYGH+VAKRVRD LPLKL SH E  ++ EEVL+EIS+NT     SED   +SA+ E R
Sbjct:   43 SFDNTEEPLLHRIPGRMFLNGSTDTVSLFSQQGKKGPNQDAMIVWENFGSMEDTVFCGVFDGHGPYGHIVAKRVRDLLPLKLGSHLESYVSPEEVLKEISLNTDDRKISEDLVHISANGESR 164          
BLAST of FC930877 vs. ExPASy Swiss-Prot
Match: P2C06_ARATH (Probable protein phosphatase 2C 6 OS=Arabidopsis thaliana GN=At1g16220 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.159e-29
Identity = 59/102 (57.84%), Postives = 77/102 (75.49%), Query Frame = 2
Query:  317 LHRIPGRLFLNGSSEIASLFTQQGKKGTNQDAMIVWENFASRADTIFCGVFDGHGPYGHMVAKRVRDSLPLKLSSHWEVNITSEEVLREISINTAGSINSED 622
            + ++ GRL  NGSSEIA L+TQQGKKGTNQDAM+VWENF SR+DT+ CGVFDGHGP+GHMV+KRVRD LP  LS+  +    +E+   +  +N+A +   E+
Sbjct:   49 IQQVVGRLVGNGSSEIACLYTQQGKKGTNQDAMLVWENFCSRSDTVLCGVFDGHGPFGHMVSKRVRDMLPFTLSTQLKTTSGTEQSSSKNGLNSAPTCVDEE 150          
BLAST of FC930877 vs. ExPASy Swiss-Prot
Match: P2C66_ORYSJ (Probable protein phosphatase 2C 66 OS=Oryza sativa subsp. japonica GN=Os08g0500300 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.392e-28
Identity = 63/120 (52.50%), Postives = 89/120 (74.17%), Query Frame = 2
Query:  308 EEPLHRIPGRLFLNGSSEIASLFTQQGKKGTNQDAMIVWENFASRADTIFCGVFDGHGPYGHMVAKRVRDSLPLKLSSHWEVNITSEEVLREISINTAGSINSEDTSFVSADEEPRASAD 667
            EE L ++ GR+ +NG+S  A L TQQG+KGTNQDAM+VWENF + +D++FCGVFDGHGPYGH VAK+VRDSLP+K+ + W+ +  +E+     + + +GS+NSE++  V  D+E    AD
Sbjct:   70 EEELAKVEGRVCVNGASAAACLHTQQGRKGTNQDAMVVWENF-NTSDSVFCGVFDGHGPYGHFVAKKVRDSLPVKIRTLWKTS-ANEDTSSHQNGSISGSVNSEESPVV--DDEWGEYAD 185          
BLAST of FC930877 vs. ExPASy Swiss-Prot
Match: P2C18_ARATH (Probable protein phosphatase 2C 18 OS=Arabidopsis thaliana GN=At1g79630 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.303e-26
Identity = 57/86 (66.28%), Postives = 72/86 (83.72%), Query Frame = 2
Query:  311 EPLHRIPGRLFLNGSSEIASLFTQQGKKGTNQDAMIVWENFASRADTIFCGVFDGHGPYGHMVAKRVRDSLPLKLSSHWEVNITSE 568
            E + ++ GRL  NGSS+IA L+TQQGKKGTNQDAM+V+ENF SR DT+FCGVFDGHGP+GHMVAK+VRD+LP  L +  ++ +TSE
Sbjct:   50 EGIPQVLGRLVSNGSSKIACLYTQQGKKGTNQDAMLVFENFCSRDDTVFCGVFDGHGPFGHMVAKKVRDTLPFTLLT--QLKMTSE 133          
BLAST of FC930877 vs. ExPASy Swiss-Prot
Match: P2C14_ORYSJ (Probable protein phosphatase 2C 14 OS=Oryza sativa subsp. japonica GN=Os02g0471500 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.303e-26
Identity = 59/86 (68.60%), Postives = 66/86 (76.74%), Query Frame = 2
Query:  287 PSFDYRREEP-LHRIPGRLFLNGSSEIASLFTQQGKKGTNQDAMIVWENFASRADTIFCGVFDGHGPYGHMVAKRVRDSLPLKLSS 541
            P  D RR    L  IPGR+  NG+  +ASL+T QGKKG NQDAMIVWENF SR DTIFCGVFDGHGP GH+VAKRVRD LP+KL +
Sbjct:  103 PGADGRRAAAELRGIPGRIAGNGACAVASLYTLQGKKGVNQDAMIVWENFCSREDTIFCGVFDGHGPNGHLVAKRVRDLLPIKLGA 188          
BLAST of FC930877 vs. ExPASy Swiss-Prot
Match: P2C38_ORYSJ (Probable protein phosphatase 2C 38 OS=Oryza sativa subsp. japonica GN=Os04g0321800 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.190e-25
Identity = 50/71 (70.42%), Postives = 61/71 (85.92%), Query Frame = 2
Query:  332 GRLFLNGSSEIASLFTQQGKKGTNQDAMIVWENFASRADTIFCGVFDGHGPYGHMVAKRVRDSLPLKLSSH 544
            GR+  NG+S  ASL+T +G KG NQDAM+VWENF S+ DTIFCGVFDGHGPYGH+V+KRVRD LP+KLS++
Sbjct:  108 GRIAANGASAAASLYTMRGNKGVNQDAMLVWENFCSKEDTIFCGVFDGHGPYGHLVSKRVRDLLPIKLSAN 178          
BLAST of FC930877 vs. ExPASy Swiss-Prot
Match: P2C75_ORYSJ (Probable protein phosphatase 2C 75 OS=Oryza sativa subsp. japonica GN=Os11g0417400 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.032e-23
Identity = 45/69 (65.22%), Postives = 59/69 (85.51%), Query Frame = 2
Query:  329 PGRLFLNGSSEIASLFTQQGKKGTNQDAMIVWENFASRADTIFCGVFDGHGPYGHMVAKRVRDSLPLKL 535
            PGR+  NG+  +A LFT+QGKKGTNQDAM+ WEN+  R+DT+FCGVFDGHGP+GH++A++VRD LP +L
Sbjct:   33 PGRIAGNGAGNVACLFTRQGKKGTNQDAMVAWENYNGRSDTVFCGVFDGHGPHGHLIARKVRDILPSRL 101          
BLAST of FC930877 vs. ExPASy Swiss-Prot
Match: P2C64_ORYSJ (Probable protein phosphatase 2C 64 OS=Oryza sativa subsp. japonica GN=Os07g0566200 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.761e-23
Identity = 49/80 (61.25%), Postives = 63/80 (78.75%), Query Frame = 2
Query:  305 REEPLHRIPGRLFLN-GSSEIASLFTQQGKKGTNQDAMIVWENFASRADTIFCGVFDGHGPYGHMVAKRVRDSLPLKLSS 541
            RE+ L  +PGR+F N G S  A+++TQQG+KG NQDAM+VW+ F    D + CGVFDGHGP+GH+VA+RVRDSLPL+L S
Sbjct:   33 REDQLGMVPGRIFSNDGRSRTATVYTQQGRKGINQDAMLVWDGFGGEDDGVLCGVFDGHGPHGHVVARRVRDSLPLRLMS 112          
BLAST of FC930877 vs. ExPASy Swiss-Prot
Match: P2C01_ARATH (Probable protein phosphatase 2C 1 OS=Arabidopsis thaliana GN=PPC6-6 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.336e-22
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = 2
Query:  326 IPGRLFLNGSSEIASLFTQQGKKGTNQDAMIVWENFASRADTIFCGVFDGHGPYGHMVAKRVRDSLPLKLSS 541
            IP R+  NG S  + +FTQQG+KG NQDAMIVWE+F S+ D  FCGVFDGHGP+GH+VA++VRDSLP+KL S
Sbjct:   48 IPNRIIGNGKSRSSCIFTQQGRKGINQDAMIVWEDFMSK-DVTFCGVFDGHGPHGHLVARKVRDSLPVKLLS 118          
The following BLAST results are available for this feature:
BLAST of FC930877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
P2C33_ARATH4.161e-4956.07Probable protein phosphatase 2C 33 OS=Arabidopsis ... [more]
P2C74_ARATH1.434e-4168.03Probable protein phosphatase 2C 74 OS=Arabidopsis ... [more]
P2C06_ARATH8.159e-2957.84Probable protein phosphatase 2C 6 OS=Arabidopsis t... [more]
P2C66_ORYSJ1.392e-2852.50Probable protein phosphatase 2C 66 OS=Oryza sativa... [more]
P2C18_ARATH1.303e-2666.28Probable protein phosphatase 2C 18 OS=Arabidopsis ... [more]
P2C14_ORYSJ1.303e-2668.60Probable protein phosphatase 2C 14 OS=Oryza sativa... [more]
P2C38_ORYSJ4.190e-2570.42Probable protein phosphatase 2C 38 OS=Oryza sativa... [more]
P2C75_ORYSJ1.032e-2365.22Probable protein phosphatase 2C 75 OS=Oryza sativa... [more]
P2C64_ORYSJ1.761e-2361.25Probable protein phosphatase 2C 64 OS=Oryza sativa... [more]
P2C01_ARATH4.336e-2266.67Probable protein phosphatase 2C 1 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionC34110A04EF PostHarvP1 Citrus clementina cDNA clone C34110A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930877 ID=FC930877; Name=FC930877; organism=Citrus clementina; type=EST; length=668bp
AGCAAAATCTTGGTCCTTTTCTGATCAGTTTCAGCTTGATCTGGCAAGAG
GTTTCTGTCTTGGCCAGGAAGGTTTTCACCAACAAGTTCTGACGGATTCG
TCTTCTGAAAATAGGGGGTGTGATTGTCTGGCTGGTCTGGAGTGCCTATT
AAACATTATCAGGGCCCTTAGAATGGGGTCCTGCTTCTCTGCCGAAAGCA
GGAGCCCCATCCCAGGTTCGCCATCCTCTCCGGGCCTGGGAATCAGGAAG
AGGAAGAGCTCGAGAAAAAAACTGGGGTCAAGGAATCCTTCATTTGACTA
CAGGAGGGAGGAGCCGTTGCATAGGATTCCAGGGAGATTGTTTTTGAATG
GTTCAAGTGAGATTGCTTCACTCTTTACCCAACAAGGCAAGAAAGGAACA
AACCAAGATGCCATGATTGTTTGGGAGAACTTTGCATCAAGGGCAGATAC
AATATTTTGTGGTGTTTTTGATGGCCATGGTCCCTATGGTCATATGGTTG
CGAAGAGAGTGAGGGATTCTCTTCCATTAAAACTGAGCTCTCACTGGGAA
GTGAACATAACCAGTGAGGAAGTTTTGAGAGAGATAAGCATTAACACTGC
TGGAAGCATAAACTCTGAGGATACATCTTTTGTATCTGCCGATGAAGAAC
CTAGAGCCTCTGCCGATC
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