FC930963

Overview
NameFC930963
Unique NameFC930963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930963 vs. ExPASy Swiss-Prot
Match: SPTC2_HUMAN (Serine palmitoyltransferase 2 OS=Homo sapiens GN=SPTLC2 PE=1 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.241e-56
Identity = 111/223 (49.78%), Postives = 150/223 (67.26%), Query Frame = 1
Query:    1 SMEGELCKFPEXXXXXXXXXXXXXLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQNXXXXXXXXXXXXLLLARARICISASHTKEDLIKALEVISRVGDLVGINTSQ 669
            SMEG + + PE             LDEAHSIGA+G TGRGV E   +D  DVD+MMGTFTKSFG+ GGYI G KELI YL+    + +YATS+SPP  EQII+++K I+G+DG+S G + + ++ EN+ +FR  L++MGF + G+ DSPV+P+MLY PAKI AF RE L++N            ++ +RAR C+SA+HTKE L  AL+ I  VGDL+ +  S+
Sbjct:  319 SMEGSIVRLPEVIALKKKYKAYLYLDEAHSIGALGPTGRGVVEYFGLDPEDVDVMMGTFTKSFGASGGYIGGKKELIDYLRTHSHSAVYATSLSPPVVEQIITSMKCIMGQDGTSLGKECVQQLAENTRYFRRRLKEMGFIIYGNEDSPVVPLMLYMPAKIGAFGREMLKRNIGVVVVGFPATPIIESRARFCLSAAHTKEILDTALKEIDEVGDLLQLKYSR 541          
BLAST of FC930963 vs. ExPASy Swiss-Prot
Match: SPTC2_MOUSE (Serine palmitoyltransferase 2 OS=Mus musculus GN=Sptlc2 PE=2 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 1.051e-55
Identity = 109/223 (48.88%), Postives = 150/223 (67.26%), Query Frame = 1
Query:    1 SMEGELCKFPEXXXXXXXXXXXXXLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQNXXXXXXXXXXXXLLLARARICISASHTKEDLIKALEVISRVGDLVGINTSQ 669
            SMEG + + PE             LDEAHSIGA+G +GRGV +   +D  DVD+MMGTFTKSFG+ GGYI G KELI YL+    + +YATS+SPP  EQII+++K I+G+DG+S G + + ++ EN+ +FR  L++MGF + G+ DSPV+P+MLY PAKI AF RE L++N            ++ +RAR C+SA+HTKE L  AL+ I  VGDL+ +  S+
Sbjct:  317 SMEGSIVRLPEVIALKKKYKAYLYLDEAHSIGALGPSGRGVVDYFGLDPEDVDVMMGTFTKSFGASGGYIGGKKELIDYLRTHSHSAVYATSMSPPVMEQIITSMKCIMGQDGTSLGKECIQQLAENTRYFRRRLKEMGFIIYGNEDSPVVPLMLYMPAKIGAFGREMLKRNIGVVVVGFPATPIIESRARFCLSAAHTKEILDTALKEIDEVGDLLQLKYSR 539          
BLAST of FC930963 vs. ExPASy Swiss-Prot
Match: SPTC2_DICDI (Serine palmitoyltransferase 2 OS=Dictyostelium discoideum GN=sptB PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.341e-55
Identity = 104/217 (47.93%), Postives = 146/217 (67.28%), Query Frame = 1
Query:    1 SMEGELCKFPEXXXXXXXXXXXXXLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQNXXXXXXXXXXXXLLLARARICISASHTKEDLIKALEVISRVGDLV 651
            SMEGE+   PE             +DEAHSIGA+GKTGRG+ +   +D  ++DI+MGT+TKSFG+ GGY+A  K LI +L+ +  + +YA S+SP  A Q + A++VI+GEDG+  GA+KL ++ +NSN+FR ++++MGF +LG+ DSPV+P+ML+NPAK+ AFSR CL ++            L   R R CISASHT EDL  AL  I  +GDL+
Sbjct:  261 SMEGEVANLPEILAIKKKYKCYLYIDEAHSIGALGKTGRGIVDYYGIDPKEIDILMGTYTKSFGAIGGYVASDKSLIDHLRQSSFSQVYANSMSPVCAVQALEALRVIMGEDGTDTGAKKLKQLHDNSNYFREKIREMGFVILGNKDSPVIPLMLFNPAKLSAFSRLCLEKHIAVVVVGYPATPLTEPRTRFCISASHTIEDLDWALRQIDEIGDLI 477          
BLAST of FC930963 vs. ExPASy Swiss-Prot
Match: SPTC2_CRIGR (Serine palmitoyltransferase 2 OS=Cricetulus griseus GN=SPTLC2 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.811e-55
Identity = 108/223 (48.43%), Postives = 149/223 (66.82%), Query Frame = 1
Query:    1 SMEGELCKFPEXXXXXXXXXXXXXLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQNXXXXXXXXXXXXLLLARARICISASHTKEDLIKALEVISRVGDLVGINTSQ 669
            SMEG + + PE             LDEAHSIGA+G +GRGV +   +D  DVD+MMGTFTKSFG+ GGYI G K LI YL+    + +YATS+SPP  EQII+++K I+G+DG+S G + + ++ EN+ +FR  L++MGF + G+ DSPV+P+MLY PAKI AF RE L++N            ++ +RAR C+SA+HTKE L  AL+ I  VGDL+ +  S+
Sbjct:  317 SMEGSIVRLPEVIALKKKYKAYLYLDEAHSIGALGPSGRGVVDYFGLDPEDVDVMMGTFTKSFGASGGYIGGKKALIDYLRTHSHSAVYATSMSPPVMEQIITSMKCIMGQDGTSLGKECVQQLAENTKYFRRRLKEMGFIIYGNEDSPVVPLMLYMPAKIGAFGREMLKRNVGVVVVGFPATPIIESRARFCLSAAHTKEILDTALKEIDEVGDLLQLKYSR 539          
BLAST of FC930963 vs. ExPASy Swiss-Prot
Match: SPTC3_HUMAN (Serine palmitoyltransferase 3 OS=Homo sapiens GN=SPTLC3 PE=1 SV=3)

HSP 1 Score: 201.445 bits (511), Expect = 3.498e-51
Identity = 98/223 (43.95%), Postives = 146/223 (65.47%), Query Frame = 1
Query:    1 SMEGELCKFPEXXXXXXXXXXXXXLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQNXXXXXXXXXXXXLLLARARICISASHTKEDLIKALEVISRVGDLVGINTSQ 669
            SMEG +   P+             +DEAHSIGAVG TGRGV E   +D  +VD++MGTFTKSFG+ GGYIAG K+L+ YL+    + +YA+S+SPP AEQII ++K+I+G DG+++G Q++ ++ +N+ +FR  LQ+MGF + G+ ++ V+P++LY P K+ AF+R  L +             L  ARAR C+SA+HT+E L   LE +  +GDL+ +  S+
Sbjct:  311 SMEGSIVHLPQIIALKKKYKAYLYIDEAHSIGAVGPTGRGVTEFFGLDPHEVDVLMGTFTKSFGASGGYIAGRKDLVDYLRVHSHSAVYASSMSPPIAEQIIRSLKLIMGLDGTTQGLQRVQQLAKNTRYFRQRLQEMGFIIYGNENASVVPLLLYMPGKVAAFARHMLEKKIGVVVVGFPATPLAEARARFCVSAAHTREMLDTVLEALDEMGDLLQLKYSR 533          
BLAST of FC930963 vs. ExPASy Swiss-Prot
Match: LCB2_YEAST (Serine palmitoyltransferase 2 OS=Saccharomyces cerevisiae GN=LCB2 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.425e-46
Identity = 98/222 (44.14%), Postives = 134/222 (60.36%), Query Frame = 1
Query:    1 SMEGELCKFPEXXXXXXXXXXXXXLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQNXXXXXXXXXXXXLLLARARICISASHTKEDLIKALEVISRVGDLVGINTS 666
            SMEG LC  P+             +DEAHSIGA+G TGRGVCE+  VD  DVDI+MGTFTKSFG+ GGYIA  + +I  L+       Y+ S+  P   Q IS+++ I GE    +G ++L RI  NS + R  LQ++GF V G  DSPV+P++LY P+K+PAFSR  L++             L+ +R R C+SAS TKED+   L  +S VGD + + ++
Sbjct:  306 SMEGTLCNLPKLVELKKKYKCYLFIDEAHSIGAMGPTGRGVCEIFGVDPKDVDILMGTFTKSFGAAGGYIAADQWIIDRLRLDLTTVSYSESMPAPVLAQTISSLQTISGEICPGQGTERLQRIAFNSRYLRLALQRLGFIVYGVADSPVIPLLLYCPSKMPAFSRMMLQRRIAVVVVAYPATPLIESRVRFCMSASLTKEDIDYLLRHVSEVGDKLNLKSN 527          
BLAST of FC930963 vs. ExPASy Swiss-Prot
Match: SPTC3_MOUSE (Serine palmitoyltransferase 3 OS=Mus musculus GN=Sptlc3 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.196e-45
Identity = 90/219 (41.10%), Postives = 134/219 (61.19%), Query Frame = 1
Query:    1 SMEGELCKFPEXXXXXXXXXXXXXLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQNXXXXXXXXXXXXLLLARARICISASHTKEDLIKALEVISRVGDLVGI 657
            SMEG +    +             +DEAHSIG  G TGRGV EL  +D  D+D+ MGTFTKSF   GGYI G KE++ YL+    +  YATS+SP  A Q+I ++K+ +G +G+  G +++ +++EN  +FR  L++MGF + G++ SPV+P++LY PAK+ AFSR  L++             L   RAR  +S++HT+E L   LEV+  +GDL+ +
Sbjct:  311 SMEGSIVNLAQIVALKKKYKAYLYIDEAHSIGCTGPTGRGVRELFGLDPEDIDVYMGTFTKSFSGSGGYIGGKKEIVDYLRMQSHSTTYATSMSPVVAAQLIRSLKITMGYEGNIGGMERIQQLKENIKYFRRRLKEMGFIIYGNDFSPVIPVLLYMPAKVSAFSRFLLKKKISVVVVGFPATSLPEGRARFSMSSAHTREMLDTVLEVVDELGDLLNV 529          
BLAST of FC930963 vs. ExPASy Swiss-Prot
Match: LCB2_SCHPO (Serine palmitoyltransferase 2 OS=Schizosaccharomyces pombe GN=lcb2 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.226e-44
Identity = 89/222 (40.09%), Postives = 128/222 (57.66%), Query Frame = 1
Query:    1 SMEGELCKFPEXXXXXXXXXXXXXLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQNXXXXXXXXXXXXLLLARARICISASHTKEDLIKALEVISRVGDLVGINTS 666
            SMEG  C  P+             +DEAHSIGA+G  G G+C+   + T  VDI+MGTFTKSFG+ GGYI+ +  +I  L+ T P ++YA S+SP    QI S+   I+    +S G +++ R+  NS + R  L+++GF + G++DSPV+P++LYNP KI AFS E L++             LL +R R C SASH K D+   L     VG+ + +  S
Sbjct:  338 SMEGNFCDLPKVVELKNRYKFYLFIDEAHSIGAIGPRGGGICDYFGISTDHVDILMGTFTKSFGAAGGYISATPNIINKLRVTNPGYVYAESMSPAVLAQIKSSFLEIMDNSPTSAGLERIERLAFNSRYIRLGLKRLGFIIFGNDDSPVVPLLLYNPGKINAFSHEMLKRGIAVVVVGYPACPLLTSRVRFCFSASHNKADMDYFLRACDEVGEKLQLKFS 559          
BLAST of FC930963 vs. ExPASy Swiss-Prot
Match: LCB2_KLULA (Serine palmitoyltransferase 2 OS=Kluyveromyces lactis GN=LCB2 PE=3 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 2.513e-41
Identity = 89/222 (40.09%), Postives = 126/222 (56.76%), Query Frame = 1
Query:    1 SMEGELCKFPEXXXXXXXXXXXXXLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQNXXXXXXXXXXXXLLLARARICISASHTKEDLIKALEVISRVGDLVGINTS 666
            SMEG +   P+             +DEAHSIGA+G +GRGVC+   +  +D+DIMMGT TKSFG+ GGYIA  K +I   +       Y      P   QI S++K I G+     G ++L RI  N+ + R  LQ++GF V G  DSPV+P++LY P+K+PAFSR  L++             L+ +R R C+SA+ TKED+   L+ I+ VGD + +  S
Sbjct:  305 SMEGTMANLPKLVELKKKYKCYLFVDEAHSIGAMGPSGRGVCDFFGIPCSDIDIMMGTLTKSFGAAGGYIAADKWIIDRFRLDLTTPHYGEPTPAPVLAQIASSLKTITGDINPGEGQERLQRIAFNARYLRLALQRLGFIVYGIADSPVIPMLLYAPSKMPAFSRMMLQRKIAVVVVAYPATPLIESRVRFCVSAALTKEDIDYLLQHINEVGDKLFLKVS 526          
BLAST of FC930963 vs. ExPASy Swiss-Prot
Match: BIKB_THEM4 (Putative 8-amino-7-oxononanoate synthase/2-amino-3-ketobutyrate coenzyme A ligase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=Tmel_1346 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.528e-30
Identity = 75/219 (34.25%), Postives = 118/219 (53.88%), Query Frame = 1
Query:    1 SMEGELCKFPEXXXXXXXXXXXXXLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQNXXXXXXXXXXXXLLLARARICISASHTKEDLIKALEVISRVGDLVGI 657
            SM+G+L   PE             +D+AH  G +G  GRG+ +   +    VDI +GT +K+FG  GGYIAG KELI YLK      L+++ +SP      + A K++   D      +++ R+ +N+ +F+ E++K+GF+  G++++P+ P+MLY+      FS+E   +                AR R+ ISA HTKEDL  ALE   +VG  +G+
Sbjct:  180 SMDGDLAPLPEIVELAEKYNAMVMVDDAHGEGVLGSHGRGIVDHFGLH-GRVDIEIGTLSKAFGVLGGYIAGKKELIDYLKQKARPFLFSSPLSPADTAAALEATKILQESD------ERVKRLWDNAKYFKEEMKKLGFDT-GESETPITPVMLYDAKLSTQFSKELFEEGIFAQSIGYPTVPKGKARIRVMISAVHTKEDLDFALEKFEKVGKKLGV 390          
The following BLAST results are available for this feature:
BLAST of FC930963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
SPTC2_HUMAN1.241e-5649.78Serine palmitoyltransferase 2 OS=Homo sapiens GN=S... [more]
SPTC2_MOUSE1.051e-5548.88Serine palmitoyltransferase 2 OS=Mus musculus GN=S... [more]
SPTC2_DICDI2.341e-5547.93Serine palmitoyltransferase 2 OS=Dictyostelium dis... [more]
SPTC2_CRIGR6.811e-5548.43Serine palmitoyltransferase 2 OS=Cricetulus griseu... [more]
SPTC3_HUMAN3.498e-5143.95Serine palmitoyltransferase 3 OS=Homo sapiens GN=S... [more]
LCB2_YEAST4.425e-4644.14Serine palmitoyltransferase 2 OS=Saccharomyces cer... [more]
SPTC3_MOUSE2.196e-4541.10Serine palmitoyltransferase 3 OS=Mus musculus GN=S... [more]
LCB2_SCHPO9.226e-4440.09Serine palmitoyltransferase 2 OS=Schizosaccharomyc... [more]
LCB2_KLULA2.513e-4140.09Serine palmitoyltransferase 2 OS=Kluyveromyces lac... [more]
BIKB_THEM41.528e-3034.25Putative 8-amino-7-oxononanoate synthase/2-amino-3... [more]

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Properties
Property NameValue
Genbank descriptionC34110H09EF PostHarvP1 Citrus clementina cDNA clone C34110H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930963 ID=FC930963; Name=FC930963; organism=Citrus clementina; type=EST; length=677bp
AGCATGGAAGGGGAGCTTTGCAAATTTCCTGAGATTATTGCTATCTGCAA
AAAATATAAGGCATATATATACTTGGATGAGGCCCACAGTATCGGAGCAG
TGGGCAAAACCGGAAGAGGGGTTTGTGAGCTCTTAGAAGTTGATACTGCT
GATGTGGATATCATGATGGGAACTTTTACTAAATCATTTGGATCCTGTGG
TGGCTACATTGCAGGATCTAAGGAACTCATCCAATATTTGAAGTACACTT
GTCCTGCTCATCTTTACGCAACTTCAATTTCACCACCTGCTGCAGAACAA
ATAATATCTGCCATAAAGGTTATTCTCGGGGAGGATGGTTCCAGCAGAGG
TGCCCAGAAACTTGCACGCATTCGTGAGAATAGCAACTTTTTTAGGTCCG
AACTGCAAAAAATGGGGTTTGAGGTTCTTGGAGATAATGATTCTCCAGTG
ATGCCAATTATGCTTTACAATCCTGCCAAAATCCCTGCTTTCTCACGAGA
GTGCCTCAGGCAGAATGTGGCTGTTGTGACTGTTGCATTTCCTGCAACCC
CACTGCTATTGGCAAGGGCTCGAATCTGCATATCAGCATCGCATACCAAG
GAGGACCTGATTAAAGCCTTGGAGGTTATCAGTAGGGTTGGTGATCTTGT
GGGTATTAATACTTCCCAGCTGAACCT
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