FC930994

Overview
NameFC930994
Unique NameFC930994
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length484
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930994 vs. ExPASy Swiss-Prot
Match: VATF_DICDI (V-type proton ATPase subunit F OS=Dictyostelium discoideum GN=vatF PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 5.849e-28
Identity = 61/110 (55.45%), Postives = 81/110 (73.64%), Query Frame = 1
Query:   22 TKLIAVIGDEDTVTGFILAGVGHRTAE-GTNFLVVKPSTPISAIEASFRTLSNRDDVAIILINQHVAEEIRHLLNTYDKTIPTVLEIPSKDSPYDPAKDYIMKRVNLMLG 348
            T L+AVIGDED VTGF+LAGVG +  +   NFLVV   T  + IE +F++ + R+D+AII+I Q VA+EIR+L++ Y + IPT+LEIPSKD PYDP KD +M +V  M G
Sbjct:    9 TALVAVIGDEDVVTGFLLAGVGQKDKKKNENFLVVDSKTSQAKIETAFKSFTTRNDIAIIMITQKVADEIRYLIDEYHQVIPTILEIPSKDHPYDPKKDSVMLKVKKMTG 118          
BLAST of FC930994 vs. ExPASy Swiss-Prot
Match: VATF_RAT (V-type proton ATPase subunit F OS=Rattus norvegicus GN=Atp6v1f PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 7.638e-28
Identity = 63/112 (56.25%), Postives = 80/112 (71.43%), Query Frame = 1
Query:   10 MSDGTKLIAVIGDEDTVTGFILAGVGHRTAEG-TNFLVVKPSTPISAIEASFRTLSNRDDVAIILINQHVAEEIRHLLNTYDKTIPTVLEIPSKDSPYDPAKDYIMKRVNLM 342
            M+   KLIAVIGDEDTVTGF+L G+G        NFLVV+  T I+ IE +FR   NRDD+ IILINQ++AE +RH L+ + ++IP VLEIPSK+ PYD AKD I++R   M
Sbjct:    1 MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGM 112          
BLAST of FC930994 vs. ExPASy Swiss-Prot
Match: VATF_MOUSE (V-type proton ATPase subunit F OS=Mus musculus GN=Atp6v1f PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 7.638e-28
Identity = 63/112 (56.25%), Postives = 80/112 (71.43%), Query Frame = 1
Query:   10 MSDGTKLIAVIGDEDTVTGFILAGVGHRTAEG-TNFLVVKPSTPISAIEASFRTLSNRDDVAIILINQHVAEEIRHLLNTYDKTIPTVLEIPSKDSPYDPAKDYIMKRVNLM 342
            M+   KLIAVIGDEDTVTGF+L G+G        NFLVV+  T I+ IE +FR   NRDD+ IILINQ++AE +RH L+ + ++IP VLEIPSK+ PYD AKD I++R   M
Sbjct:    1 MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGM 112          
BLAST of FC930994 vs. ExPASy Swiss-Prot
Match: VATF_BOVIN (V-type proton ATPase subunit F OS=Bos taurus GN=ATP6V1F PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 7.638e-28
Identity = 63/112 (56.25%), Postives = 80/112 (71.43%), Query Frame = 1
Query:   10 MSDGTKLIAVIGDEDTVTGFILAGVGHRTAEG-TNFLVVKPSTPISAIEASFRTLSNRDDVAIILINQHVAEEIRHLLNTYDKTIPTVLEIPSKDSPYDPAKDYIMKRVNLM 342
            M+   KLIAVIGDEDTVTGF+L G+G        NFLVV+  T I+ IE +FR   NRDD+ IILINQ++AE +RH L+ + ++IP VLEIPSK+ PYD AKD I++R   M
Sbjct:    1 MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRARGM 112          
BLAST of FC930994 vs. ExPASy Swiss-Prot
Match: VATF_HUMAN (V-type proton ATPase subunit F OS=Homo sapiens GN=ATP6V1F PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 9.976e-28
Identity = 63/112 (56.25%), Postives = 80/112 (71.43%), Query Frame = 1
Query:   10 MSDGTKLIAVIGDEDTVTGFILAGVGHRTAEG-TNFLVVKPSTPISAIEASFRTLSNRDDVAIILINQHVAEEIRHLLNTYDKTIPTVLEIPSKDSPYDPAKDYIMKRVNLM 342
            M+   KLIAVIGDEDTVTGF+L G+G        NFLVV+  T I+ IE +FR   NRDD+ IILINQ++AE +RH L+ + ++IP VLEIPSK+ PYD AKD I++R   M
Sbjct:    1 MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDAHQQSIPAVLEIPSKEHPYDAAKDSILRRARGM 112          
BLAST of FC930994 vs. ExPASy Swiss-Prot
Match: VATF_NEUCR (V-type proton ATPase subunit F OS=Neurospora crassa GN=vma-7 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.702e-27
Identity = 62/113 (54.87%), Postives = 81/113 (71.68%), Query Frame = 1
Query:   25 KLIAVIGDEDTVTGFILAGVGHRTA---EGTNFLVVKPSTPISAIEASF-RTLSNRDDVAIILINQHVAEEIRHLLNTYDKTIPTVLEIPSKDSPYDPAKDYIMKRVNLMLGE 351
            + +AVIGDED+VTG +LAG+GH TA      NFLVV   T  +AIEA+F R  + R D+ I+LINQH+A+ IRH ++T+    PTVLEIPSKD PYDP KD +++RV  + GE
Sbjct:   12 QFLAVIGDEDSVTGLLLAGIGHVTAPPDSQKNFLVVDNKTDNAAIEAAFDRFTTERKDIGIVLINQHIADRIRHRVDTHTAAFPTVLEIPSKDHPYDPEKDSVLRRVRRLFGE 124          
BLAST of FC930994 vs. ExPASy Swiss-Prot
Match: VATF_CAEEL (Probable V-type proton ATPase subunit F OS=Caenorhabditis elegans GN=vha-9 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.219e-25
Identity = 56/103 (54.37%), Postives = 75/103 (72.82%), Query Frame = 1
Query:   25 KLIAVIGDEDTVTGFILAGVGH-RTAEGTNFLVVKPSTPISAIEASFRTLSNRDDVAIILINQHVAEEIRHLLNTYDKTIPTVLEIPSKDSPYDPAKDYIMKR 330
            K++AVIGDEDTV GF+L GVG    A   N+L+V   T +  IE +F     RDD+AIILINQH+AE IR+ ++ + ++IP VLEIPSK++PYDP+KD I+ R
Sbjct:    8 KILAVIGDEDTVVGFLLGGVGELNKARKPNYLIVDKQTTVQEIEEAFNGFCARDDIAIILINQHIAEMIRYAVDNHTQSIPAVLEIPSKEAPYDPSKDSILNR 110          
BLAST of FC930994 vs. ExPASy Swiss-Prot
Match: VATF_XENLA (V-type proton ATPase subunit F (Fragment) OS=Xenopus laevis GN=atp6s14 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.548e-25
Identity = 57/103 (55.34%), Postives = 74/103 (71.84%), Query Frame = 1
Query:   37 VIGDEDTVTGFILAGVGHRTAEGT-NFLVVKPSTPISAIEASFRTLSNRDDVAIILINQHVAEEIRHLLNTYDKTIPTVLEIPSKDSPYDPAKDYIMKRVNLM 342
            VIGDEDTVTGF+L G+G        NFLVV+  T ++ IE +FR+  NRDD+ IILINQ +AE IRH+++T+  +IP VLEIPSK+ PYD  KD I++R   M
Sbjct:    1 VIGDEDTVTGFLLGGIGELNKNRKPNFLVVEKETSVTEIEETFRSFLNRDDIGIILINQFIAEMIRHVIDTHTISIPAVLEIPSKEHPYDATKDSILRRAKGM 103          
BLAST of FC930994 vs. ExPASy Swiss-Prot
Match: VATF_MANSE (V-type proton ATPase subunit F OS=Manduca sexta GN=VHA14 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.052e-25
Identity = 56/107 (52.34%), Postives = 75/107 (70.09%), Query Frame = 1
Query:   25 KLIAVIGDEDTVTGFILAGVGH-RTAEGTNFLVVKPSTPISAIEASFRTLSNRDDVAIILINQHVAEEIRHLLNTYDKTIPTVLEIPSKDSPYDPAKDYIMKRVNLM 342
            KLI+VIGDEDT  GF+L G+G        NF+VV  +TP+S IE  F+    RDD+ IILINQ+VAE +RH+++ +   +P+VLEIPSKD PYD +KD I++R   M
Sbjct:   10 KLISVIGDEDTCVGFLLGGIGEINKNRHPNFMVVDKNTPVSEIEECFKRFVKRDDIDIILINQNVAELVRHVIDAHTAPVPSVLEIPSKDHPYDASKDSILRRAKGM 116          
BLAST of FC930994 vs. ExPASy Swiss-Prot
Match: VATF_ARATH (V-type proton ATPase subunit F OS=Arabidopsis thaliana GN=VHA-F PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.905e-25
Identity = 54/106 (50.94%), Postives = 77/106 (72.64%), Query Frame = 1
Query:   28 LIAVIGDEDTVTGFILAGVGH-RTAEGTNFLVVKPSTPISAIEASFRTLSNRDDVAIILINQHVAEEIRHLLNTYDKTIPTVLEIPSKDSPYDPAKDYIMKRVNLM 342
            LIA+I DEDTV GF++AGVG+      TN+L+V   T +  IE +F+  S RDD+AIIL++Q++A  IR L+++Y+K +P +LEIPSKD PYDPA D ++ RV  +
Sbjct:   14 LIAMIADEDTVVGFLMAGVGNVDIRRKTNYLIVDSKTTVRQIEDAFKEFSARDDIAIILLSQYIANMIRFLVDSYNKPVPAILEIPSKDHPYDPAHDSVLSRVKYL 119          
The following BLAST results are available for this feature:
BLAST of FC930994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
VATF_DICDI5.849e-2855.45V-type proton ATPase subunit F OS=Dictyostelium di... [more]
VATF_RAT7.638e-2856.25V-type proton ATPase subunit F OS=Rattus norvegicu... [more]
VATF_MOUSE7.638e-2856.25V-type proton ATPase subunit F OS=Mus musculus GN=... [more]
VATF_BOVIN7.638e-2856.25V-type proton ATPase subunit F OS=Bos taurus GN=AT... [more]
VATF_HUMAN9.976e-2856.25V-type proton ATPase subunit F OS=Homo sapiens GN=... [more]
VATF_NEUCR1.702e-2754.87V-type proton ATPase subunit F OS=Neurospora crass... [more]
VATF_CAEEL1.219e-2554.37Probable V-type proton ATPase subunit F OS=Caenorh... [more]
VATF_XENLA3.548e-2555.34V-type proton ATPase subunit F (Fragment) OS=Xenop... [more]
VATF_MANSE6.052e-2552.34V-type proton ATPase subunit F OS=Manduca sexta GN... [more]
VATF_ARATH7.905e-2550.94V-type proton ATPase subunit F OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC34100C05EF PostHarvP1 Citrus clementina cDNA clone C34100C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930994 ID=FC930994; Name=FC930994; organism=Citrus clementina; type=EST; length=484bp
TCGAGCAGAATGAGCGACGGCACGAAACTGATTGCAGTGATCGGAGACGA
AGACACCGTCACGGGCTTCATCCTCGCGGGCGTCGGCCACCGAACGGCGG
AGGGAACGAATTTCCTCGTCGTTAAGCCTTCCACGCCAATTTCTGCCATC
GAAGCCAGCTTCCGGACGCTTTCGAACCGCGACGATGTTGCCATTATCCT
CATCAACCAGCATGTGGCCGAGGAGATCCGTCATTTGCTTAACACGTACG
ACAAGACCATTCCAACGGTGCTGGAAATCCCGAGCAAGGATTCGCCCTAC
GATCCAGCCAAGGACTACATCATGAAGCGCGTGAACCTCATGCTCGGAGA
GTCGTGAGCAGATCGCGTCTCCACCTCTCGCAATGTGGTAGGAGTAACAG
CAAAGTACGGCAAACCGTTCTAAAGACGTGGATGTGTATAGCACGTGTTA
TCTATCGCTCGTGCTCTTCAAATGTAATTTCTTT
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