FC931034

Overview
NameFC931034
Unique NameFC931034
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931034_ssr172 microsatellite FC931034_ssr172:172..183. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12851 contig Ccv1_Contig12851:663..1369. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931034 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.263e-62
Identity = 129/223 (57.85%), Postives = 150/223 (67.26%), Query Frame = 1
Query:   91 MADEHKHEE------PA-----GESVKEKITEKIH-------GHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVL 705
            MA+EHKH+E      PA      ES+ +KI+EKIH                              +K+KV+RLFGRE+PVHKVLGGGKPAD+F+W+NKK+S GVLGGATA WV            +CH +IV LAVLFLWSNA+ FINKSPP+IPEV+IPEEP+LQLAS LR EINR F  LREIASGRDLKKFL  IAGLWV+SI+G   NFLTL YI  VL
Sbjct:    1 MAEEHKHDESVIAPEPAVEVVERESLMDKISEKIHHGGDSSSSSSSSDDEDEKKKTKKPSSPSSSMKSKVYRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVL 223          
BLAST of FC931034 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.813e-62
Identity = 126/205 (61.46%), Postives = 145/205 (70.73%), Query Frame = 1
Query:   91 MADEHKHEEPAGESVKEKITEKIHGHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVL 705
            MA+EHKHEE    S+ EKI+EKIHGH                     LKTK++RLFGRE+P+HK+ GGGKPAD+FLWRNKK+S GVLG AT  W+              H  I+ALAVLFLWS+ASTFI+KSP  IPEV+IPE+ VLQLAS LR EINR F +LR+IASGRDLKKFL VIAGLWV+S VGS CNFLTL YI  VL
Sbjct:    1 MAEEHKHEE----SIMEKISEKIHGHDDSSSSSSDSDDDKNSAS---LKTKIYRLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVL 198          
BLAST of FC931034 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.069e-61
Identity = 122/206 (59.22%), Postives = 140/206 (67.96%), Query Frame = 1
Query:   91 MADEHKHEEPAGESVKEKITEKIHGHXXXXXXXXXXXXXXXXXXXXX-LKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVL 705
            M ++HKHEE    S+ EKI EKIHGH                       K+K++RLFGREKPVHKVLGGGKPAD+FLWRNKK+S GVLG  TA WV            +CH  I ALA LFLWSNA TFI+KS P IPEV+IPE+P+LQL S LR EINR   LLR IASG+D+KKF+ VIAGLWV+SI+GS  NFLTLFY   VL
Sbjct:    1 MVEDHKHEE----SILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVL 202          
BLAST of FC931034 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.396e-61
Identity = 125/219 (57.08%), Postives = 148/219 (67.58%), Query Frame = 1
Query:   91 MADEHKHEEPAG-----------ESVKEKITEKIH---GHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVL 705
            MADEHKHEE +            ES+ EK++EKIH                          LK+KV+RLFGRE+PVHKVLGGGKPAD+F+W++KK+S GV GGAT  WV            +CH +IVALAVLFLWSNA+ FI+KSPP+IPEV+IPEEP+LQLAS LR EINR    LREIASGRD+KKFLS IAGLWV+SI+G   +FLTL YI  VL
Sbjct:    1 MADEHKHEESSPNLDPAVEVVERESLMEKLSEKIHHKGDSSSSSSSDDENEKKSSSSSPKSLKSKVYRLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVL 219          
BLAST of FC931034 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.203e-58
Identity = 113/205 (55.12%), Postives = 141/205 (68.78%), Query Frame = 1
Query:   91 MADEHKHEEPAGESVKEKITEKIHGHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVL 705
            MA+E +   P  ES+ EKI+EKIH H                     +K K++R+FGREKPVHKVLGGGKPADVFLWR+KK+S  VLG ATAIWV            +CH  I+AL  LFLWSNA T INK+ P+IPE+++PEE  L +AS+LR E+N+AF +LR IA GRDLKKFL V+ GLW++S+VG+W NFLTL YI FV+
Sbjct:    1 MAEEIEKSVPTEESLMEKISEKIHHHDSSSSSESEYEKPDSPSA---VKAKIYRMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVI 202          
BLAST of FC931034 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.035e-56
Identity = 115/205 (56.10%), Postives = 138/205 (67.32%), Query Frame = 1
Query:   91 MADEHKHEEPAGESVKEKITEKIHGHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVL 705
            MA+E +      ES+ EKI +KIH H                     LK K++RLFGREKPVHKVLGGG PADVFLWR+KK+SA VLG ATAIWV            VCH LI ALA LFL SNA  F+NK+PP+IPE++I EE  L + SALR E+N+AF +LR IA GRDLKKFL V+ GLW++S+VG+W NFLTL YI FV+
Sbjct:    1 MAEELEKSMHKEESLMEKIADKIHDHDSSSSSDSEHEKPESPSA---LKAKIYRLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVV 202          
BLAST of FC931034 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.096e-41
Identity = 78/158 (49.37%), Postives = 109/158 (68.99%), Query Frame = 1
Query:  232 LKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVL 705
            +   ++R+FGRE+P+H VLGGGKPADV LWR+KK++ G+L   T IW+            +C   I+ L + FLWSNA   +NKSP  + ++YIPE+P+LQ ASA+ FE+N AF  LR IA  RD+K F+  + GLW+VS++G+W +FL+L YI FVL
Sbjct:   47 INAPIYRMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLWSNA---LNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVL 201          
BLAST of FC931034 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.076e-37
Identity = 75/151 (49.67%), Postives = 102/151 (67.55%), Query Frame = 1
Query:  250 RLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFV 702
            RLF R+KP+H VLGGGK ADV LWRNKKISA VL GATAIWV            VC+ L++ +   F+WSNAS F+N+S  R+P + +P++   ++  A+  E+NR    L+++A   +LK+FL  + GLWV ++VGS CNFLT+ YI FV
Sbjct:   44 RLFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFV 194          
BLAST of FC931034 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.105e-25
Identity = 55/154 (35.71%), Postives = 84/154 (54.55%), Query Frame = 1
Query:  241 KVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFV 702
            K  +LF R++ +H + GGGK AD+ LWR  KI+A ++ G + +W             +CH  + ++   F+WS AS F+N   P IPEV + E    QLA +     N+    L ++A GRD   F      L++VSI+G++ NF+ L +I FV
Sbjct:   19 KTTKLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFV 172          
BLAST of FC931034 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21
Identity = 47/145 (32.41%), Postives = 82/145 (56.55%), Query Frame = 1
Query:  250 RLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTL 684
            +LF R++ +H++LGGG  ADV LWR K +S G++    A W+            +   L++ L++LFLWS +++ +N+  P +PE  I E    + +  LR  +N+   +  +IA  RD + +  V   L+++S++GS  +F TL
Sbjct:    7 KLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGSLMDFQTL 151          
The following BLAST results are available for this feature:
BLAST of FC931034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RTNLA_ARATH1.263e-6257.85Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH2.813e-6261.46Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLD_ARATH1.069e-6159.22Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLB_ARATH1.396e-6157.08Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH4.203e-5855.12Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH1.035e-5656.10Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLG_ARATH2.096e-4149.37Reticulon-like protein B7 OS=Arabidopsis thaliana ... [more]
RTNLH_ARATH1.076e-3749.67Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLI_ARATH2.105e-2535.71Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLL_ARATH7.008e-2132.41Reticulon-like protein B12 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC34100F12EF PostHarvP1 Citrus clementina cDNA clone C34100F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931034 ID=FC931034; Name=FC931034; organism=Citrus clementina; type=EST; length=706bp
ATTACTTCGTTGAGAGTTGGCCAGCTTCTTTCATTTCTCAAAGTTAAAAG
GTTTGAAAACACCGACTGAGGGATTTGTACAGAGAGCGAGATGGCTGACG
AGCATAAACACGAGGAACCAGCCGGTGAATCGGTGAAGGAGAAGATAACG
GAGAAGATCCACGGCCACGATTCGTCGTCGTCGTCATCGTCATCTGACTC
CGATGATGATAAGAAGTCATCTGCATCCTCCCTCAAGACCAAAGTATTTC
GTCTCTTCGGAAGAGAAAAGCCTGTTCACAAGGTTCTTGGTGGCGGAAAA
CCTGCGGATGTTTTCTTATGGAGGAACAAGAAGATTTCAGCAGGAGTACT
TGGTGGGGCTACTGCAATATGGGTTCTTTTTGAATTGCTTGAGTACCACC
TTCTAACTCTTGTCTGTCACTGCCTGATTGTTGCACTTGCGGTGCTTTTC
TTGTGGTCTAATGCTTCCACCTTCATTAACAAGTCTCCACCACGCATTCC
AGAAGTATATATCCCTGAGGAACCAGTTTTACAGTTGGCCTCTGCACTTA
GGTTTGAGATCAATAGGGCCTTCCCTCTTCTGAGGGAAATAGCATCTGGA
AGAGATCTGAAGAAGTTTCTCTCGGTGATTGCTGGCTTGTGGGTTGTGTC
GATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATAGTTTTTG
TACTGC
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